A citation-based method for searching scientific literature

Incheol Ryu, You-Sub Won, Hongseok Ha, Eunjin Kim, Yeonkyoung Park, Min Kyung Kim, Do Hoon Kwon, Junho Choe, Hyun Kyu Song, Hosung Jung, Yoon Ki Kim. Cell Rep 2019
Times Cited: 14







List of co-cited articles
97 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Endoribonucleolytic Cleavage of m6A-Containing RNAs by RNase P/MRP Complex.
Ok Hyun Park, Hongseok Ha, Yujin Lee, Sung Ho Boo, Do Hoon Kwon, Hyun Kyu Song, Yoon Ki Kim. Mol Cell 2019
142
28

Misfolded polypeptides are selectively recognized and transported toward aggresomes by a CED complex.
Joori Park, Yeonkyoung Park, Incheol Ryu, Mi-Hyun Choi, Hyo Jin Lee, Nara Oh, Kyutae Kim, Kyoung Mi Kim, Junho Choe, Cheolju Lee,[...]. Nat Commun 2017
23
28

eIF4AIII enhances translation of nuclear cap-binding complex-bound mRNAs by promoting disruption of secondary structures in 5'UTR.
Junho Choe, Incheol Ryu, Ok Hyun Park, Joori Park, Hana Cho, Jin Seon Yoo, Sung Wook Chi, Min Kyung Kim, Hyun Kyu Song, Yoon Ki Kim. Proc Natl Acad Sci U S A 2014
41
28

Quality and quantity control of gene expression by nonsense-mediated mRNA decay.
Tatsuaki Kurosaki, Maximilian W Popp, Lynne E Maquat. Nat Rev Mol Cell Biol 2019
170
28

Discovery of selective ATP-competitive eIF4A3 inhibitors.
Masahiro Ito, Misa Iwatani, Yusuke Kamada, Satoshi Sogabe, Shoichi Nakao, Toshio Tanaka, Tomohiro Kawamoto, Samuel Aparicio, Atsushi Nakanishi, Yasuhiro Imaeda. Bioorg Med Chem 2017
13
30

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
21

Glucocorticoid receptor interacts with PNRC2 in a ligand-dependent manner to recruit UPF1 for rapid mRNA degradation.
Hana Cho, Ok Hyun Park, Joori Park, Incheol Ryu, Jeonghan Kim, Jesang Ko, Yoon Ki Kim. Proc Natl Acad Sci U S A 2015
31
21

Identification and molecular characterization of cellular factors required for glucocorticoid receptor-mediated mRNA decay.
Ok Hyun Park, Joori Park, Mira Yu, Hyoung-Tae An, Jesang Ko, Yoon Ki Kim. Genes Dev 2016
23
21

Rapid degradation of replication-dependent histone mRNAs largely occurs on mRNAs bound by nuclear cap-binding proteins 80 and 20.
Junho Choe, Kyoung Mi Kim, Sungjin Park, Ye Kyung Lee, Ok-Kyu Song, Min Kyung Kim, Byung-Gil Lee, Hyun Kyu Song, Yoon Ki Kim. Nucleic Acids Res 2013
24
21

Mammalian Staufen1 recruits Upf1 to specific mRNA 3'UTRs so as to elicit mRNA decay.
Yoon Ki Kim, Luc Furic, Luc Desgroseillers, Lynne E Maquat. Cell 2005
360
21


Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.
Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Ryo Morishita, Shinichi Hoshino, Mutsuhito Ohno, Gideon Dreyfuss, Shigeo Ohno. Genes Dev 2006
392
21

A new MIF4G domain-containing protein, CTIF, directs nuclear cap-binding protein CBP80/20-dependent translation.
Kyoung Mi Kim, Hana Cho, Kobong Choi, Jaedong Kim, Bong-Woo Kim, Young-Gyu Ko, Sung Key Jang, Yoon Ki Kim. Genes Dev 2009
70
21


Exon Junction Complexes Suppress Spurious Splice Sites to Safeguard Transcriptome Integrity.
Volker Boehm, Thiago Britto-Borges, Anna-Lena Steckelberg, Kusum K Singh, Jennifer V Gerbracht, Elif Gueney, Lorea Blazquez, Janine Altmüller, Christoph Dieterich, Niels H Gehring. Mol Cell 2018
22
21

Human CWC22 escorts the helicase eIF4AIII to spliceosomes and promotes exon junction complex assembly.
Isabelle Barbosa, Nazmul Haque, Francesca Fiorini, Charlotte Barrandon, Catherine Tomasetto, Marco Blanchette, Hervé Le Hir. Nat Struct Mol Biol 2012
70
21

Nonsense-mediated mRNA decay: The challenge of telling right from wrong in a complex transcriptome.
Aparna Kishor, Sarah E Fritz, J Robert Hogg. Wiley Interdiscip Rev RNA 2019
33
21

The exon junction complex as a node of post-transcriptional networks.
Hervé Le Hir, Jérôme Saulière, Zhen Wang. Nat Rev Mol Cell Biol 2016
121
21

The exon junction complex in neural development and neurodevelopmental disease.
J J McMahon, E E Miller, D L Silver. Int J Dev Neurosci 2016
28
21

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.
Jérôme Saulière, Valentine Murigneux, Zhen Wang, Emélie Marquenet, Isabelle Barbosa, Olivier Le Tonquèze, Yann Audic, Luc Paillard, Hugues Roest Crollius, Hervé Le Hir. Nat Struct Mol Biol 2012
127
21

Structure of the exon junction core complex with a trapped DEAD-box ATPase bound to RNA.
Christian B F Andersen, Lionel Ballut, Jesper S Johansen, Hala Chamieh, Klaus H Nielsen, Cristiano L P Oliveira, Jan Skov Pedersen, Bertrand Séraphin, Hervé Le Hir, Gregers Rom Andersen. Science 2006
285
21

The crystal structure of the exon junction complex reveals how it maintains a stable grip on mRNA.
Fulvia Bono, Judith Ebert, Esben Lorentzen, Elena Conti. Cell 2006
281
21


Effects of hippuristanol, an inhibitor of eIF4A, on adult T-cell leukemia.
Tomoyuki Tsumuraya, Chie Ishikawa, Yoshiaki Machijima, Sawako Nakachi, Masachika Senba, Junichi Tanaka, Naoki Mori. Biochem Pharmacol 2011
55
21

eIF4A3 is a novel component of the exon junction complex.
Chia C Chan, Josee Dostie, Michael D Diem, Wenqin Feng, Matthias Mann, Juri Rappsilber, Gideon Dreyfuss. RNA 2004
168
21

Proteins associated with the exon junction complex also control the alternative splicing of apoptotic regulators.
Laetitia Michelle, Alexandre Cloutier, Johanne Toutant, Lulzim Shkreta, Philippe Thibault, Mathieu Durand, Daniel Garneau, Daniel Gendron, Elvy Lapointe, Sonia Couture,[...]. Mol Cell Biol 2012
78
21

Pharmacological systems analysis defines EIF4A3 functions in cell-cycle and RNA stress granule formation.
Alborz Mazloomian, Shinsuke Araki, Momoko Ohori, Amal M El-Naggar, Damian Yap, Ali Bashashati, Shoichi Nakao, Poul H Sorensen, Atsushi Nakanishi, Sohrab Shah,[...]. Commun Biol 2019
12
25

Discovery of Novel 1,4-Diacylpiperazines as Selective and Cell-Active eIF4A3 Inhibitors.
Masahiro Ito, Toshio Tanaka, Douglas R Cary, Misa Iwatani-Yoshihara, Yusuke Kamada, Tomohiro Kawamoto, Samuel Aparicio, Atsushi Nakanishi, Yasuhiro Imaeda. J Med Chem 2017
14
21

Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells.
Skye A Schmidt, Patricia L Foley, Dong-Hoon Jeong, Linda A Rymarquis, Francis Doyle, Scott A Tenenbaum, Joel G Belasco, Pamela J Green. Nucleic Acids Res 2015
62
14

Transcriptome-wide identification of RNA binding sites by CLIP-seq.
Valentine Murigneux, Jérôme Saulière, Hugues Roest Crollius, Hervé Le Hir. Methods 2013
21
14


Cap-binding complex (CBC).
Thomas Gonatopoulos-Pournatzis, Victoria H Cowling. Biochem J 2014
100
14

Upf1 phosphorylation triggers translational repression during nonsense-mediated mRNA decay.
Olaf Isken, Yoon Ki Kim, Nao Hosoda, Greg L Mayeur, John W B Hershey, Lynne E Maquat. Cell 2008
206
14

Good cap/bad cap: how the cap-binding complex determines RNA fate.
Michaela Müller-McNicoll, Karla M Neugebauer. Nat Struct Mol Biol 2014
19
14


SMG1 regulates adipogenesis via targeting of staufen1-mediated mRNA decay.
Hana Cho, Sisu Han, Ok Hyun Park, Yoon Ki Kim. Biochim Biophys Acta 2013
16
14

Hyperphosphorylation amplifies UPF1 activity to resolve stalls in nonsense-mediated mRNA decay.
Sébastien Durand, Tobias M Franks, Jens Lykke-Andersen. Nat Commun 2016
36
14


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
14

The pioneer round of translation: features and functions.
Lynne E Maquat, Woan-Yuh Tarn, Olaf Isken. Cell 2010
148
14

A quantitative analysis of intron effects on mammalian gene expression.
Ajit Nott, Shlomo H Meislin, Melissa J Moore. RNA 2003
304
14


The molecular basis for the regulation of the cap-binding complex by the importins.
Sandra M G Dias, Kristin F Wilson, Katherine S Rojas, Andre L B Ambrosio, Richard A Cerione. Nat Struct Mol Biol 2009
62
14

Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.
Søren Lykke-Andersen, Torben Heick Jensen. Nat Rev Mol Cell Biol 2015
362
14

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.
Suzanne R Lee, Gabriel A Pratt, Fernando J Martinez, Gene W Yeo, Jens Lykke-Andersen. Mol Cell 2015
58
14


Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.
David Zünd, Andreas R Gruber, Mihaela Zavolan, Oliver Mühlemann. Nat Struct Mol Biol 2013
100
14

Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing.
Lorea Blazquez, Warren Emmett, Rupert Faraway, Jose Mario Bello Pineda, Simon Bajew, Andre Gohr, Nejc Haberman, Christopher R Sibley, Robert K Bradley, Manuel Irimia,[...]. Mol Cell 2018
29
14

Functions of hUpf3a and hUpf3b in nonsense-mediated mRNA decay and translation.
Joachim B Kunz, Gabriele Neu-Yilik, Matthias W Hentze, Andreas E Kulozik, Niels H Gehring. RNA 2006
87
14

The exon junction complex: a lifelong guardian of mRNA fate.
Lauren A Woodward, Justin W Mabin, Pooja Gangras, Guramrit Singh. Wiley Interdiscip Rev RNA 2017
40
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.