A citation-based method for searching scientific literature

Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Ali Pesaranghader. J Am Med Inform Assoc 2019
Times Cited: 8







List of co-cited articles
26 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
773
37

MetaMap Lite: an evaluation of a new Java implementation of MetaMap.
Dina Demner-Fushman, Willie J Rogers, Alan R Aronson. J Am Med Inform Assoc 2017
58
37

NCBI disease corpus: a resource for disease name recognition and concept normalization.
Rezarta Islamaj Doğan, Robert Leaman, Zhiyong Lu. J Biomed Inform 2014
135
37

CNN-based ranking for biomedical entity normalization.
Haodi Li, Qingcai Chen, Buzhou Tang, Xiaolong Wang, Hua Xu, Baohua Wang, Dong Huang. BMC Bioinformatics 2017
26
37

Semantic annotation in biomedicine: the current landscape.
Jelena Jovanović, Ebrahim Bagheri. J Biomed Semantics 2017
22
37

Deep learning.
Yann LeCun, Yoshua Bengio, Geoffrey Hinton. Nature 2015
37

Word sense disambiguation across two domains: biomedical literature and clinical notes.
Guergana K Savova, Anni R Coden, Igor L Sominsky, Rie Johnson, Philip V Ogren, Piet C de Groen, Christopher G Chute. J Biomed Inform 2008
36
37

A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).
Yonghui Wu, Joshua C Denny, S Trent Rosenbloom, Randolph A Miller, Dario A Giuse, Lulu Wang, Carmelo Blanquicett, Ergin Soysal, Jun Xu, Hua Xu. J Am Med Inform Assoc 2017
23
37


A sense inventory for clinical abbreviations and acronyms created using clinical notes and medical dictionary resources.
Sungrim Moon, Serguei Pakhomov, Nathan Liu, James O Ryan, Genevieve B Melton. J Am Med Inform Assoc 2014
27
37

Lexical methods for managing variation in biomedical terminologies.
A T McCray, S Srinivasan, A C Browne. Proc Annu Symp Comput Appl Med Care 1994
128
25

BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, Zhiyong Lu. Database (Oxford) 2016
83
25

BioBERT: a pre-trained biomedical language representation model for biomedical text mining.
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
474
25


Co-occurrence graphs for word sense disambiguation in the biomedical domain.
Andres Duque, Mark Stevenson, Juan Martinez-Romo, Lourdes Araujo. Artif Intell Med 2018
12
25

A study of deep learning approaches for medication and adverse drug event extraction from clinical text.
Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang,[...]. J Am Med Inform Assoc 2020
27
25

Evaluating the state of the art in disorder recognition and normalization of the clinical narrative.
Sameer Pradhan, Noémie Elhadad, Brett R South, David Martinez, Lee Christensen, Amy Vogel, Hanna Suominen, Wendy W Chapman, Guergana Savova. J Am Med Inform Assoc 2015
67
25

Unified medical language system coverage of emergency-medicine chief complaints.
Debbie A Travers, Stephanie W Haas. Acad Emerg Med 2006
10
25

Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation.
Antonio J Jimeno-Yepes, Bridget T McInnes, Alan R Aronson. BMC Bioinformatics 2011
27
25

CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu. J Am Med Inform Assoc 2018
118
25

MIMIC-III, a freely accessible critical care database.
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
25

MCN: A comprehensive corpus for medical concept normalization.
Yen-Fu Luo, Weiyi Sun, Anna Rumshisky. J Biomed Inform 2019
16
25

Developing a test collection for biomedical word sense disambiguation.
M Weeber, J G Mork, A R Aronson. Proc AMIA Symp 2001
44
25

A convolutional route to abbreviation disambiguation in clinical text.
Venkata Joopudi, Bharath Dandala, Murthy Devarakonda. J Biomed Inform 2018
10
25

Medical concept normalization in social media posts with recurrent neural networks.
Elena Tutubalina, Zulfat Miftahutdinov, Sergey Nikolenko, Valentin Malykh. J Biomed Inform 2018
22
25

simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes.
Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Robert G Beiko. Bioinformatics 2016
15
25

Sophia: A Expedient UMLS Concept Extraction Annotator.
Guy Divita, Qing T Zeng, Adi V Gundlapalli, Scott Duvall, Jonathan Nebeker, Matthew H Samore. AMIA Annu Symp Proc 2014
15
12

A simple algorithm for identifying negated findings and diseases in discharge summaries.
W W Chapman, W Bridewell, P Hanbury, G F Cooper, B G Buchanan. J Biomed Inform 2001
442
12

Enhanced LexSynonym Acquisition for Effective UMLS Concept Mapping.
Chris J Lu, Destinee Tormey, Lynn McCreedy, Allen C Browne. Stud Health Technol Inform 2017
3
33


Spell checker for consumer language (CSpell).
Chris J Lu, Alan R Aronson, Sonya E Shooshan, Dina Demner-Fushman. J Am Med Inform Assoc 2019
5
20



The Unified Medical Language System.
D A Lindberg, B L Humphreys, A T McCray. Methods Inf Med 1993
592
12

Essie: a concept-based search engine for structured biomedical text.
Nicholas C Ide, Russell F Loane, Dina Demner-Fushman. J Am Med Inform Assoc 2007
50
12

Using Lexical tools to convert Unicode characters to ASCII.
Chris J Lu, Allen C Browne, Guy Divita. AMIA Annu Symp Proc 2008
1
100

Heuristic sample selection to minimize reference standard training set for a part-of-speech tagger.
Kaihong Liu, Wendy Chapman, Rebecca Hwa, Rebecca S Crowley. J Am Med Inform Assoc 2007
12
12

Exploring and developing consumer health vocabularies.
Qing T Zeng, Tony Tse. J Am Med Inform Assoc 2006
104
12

The Unified Medical Language System: an informatics research collaboration.
B L Humphreys, D A Lindberg, H M Schoolman, G O Barnett. J Am Med Inform Assoc 1998
257
12

UMLS knowledge for biomedical language processing.
A T McCray, A R Aronson, A C Browne, T C Rindflesch, A Razi, S Srinivasan. Bull Med Libr Assoc 1993
49
12



GENIA corpus--semantically annotated corpus for bio-textmining.
J-D Kim, T Ohta, Y Tateisi, J Tsujii. Bioinformatics 2003
236
12

The EU-ADR corpus: annotated drugs, diseases, targets, and their relationships.
Erik M van Mulligen, Annie Fourrier-Reglat, David Gurwitz, Mariam Molokhia, Ainhoa Nieto, Gianluca Trifiro, Jan A Kors, Laura I Furlong. J Biomed Inform 2012
47
12

Integrated text mining and chemoinformatics analysis associates diet to health benefit at molecular level.
Kasper Jensen, Gianni Panagiotou, Irene Kouskoumvekaki. PLoS Comput Biol 2014
22
12


The DDI corpus: an annotated corpus with pharmacological substances and drug-drug interactions.
María Herrero-Zazo, Isabel Segura-Bedmar, Paloma Martínez, Thierry Declerck. J Biomed Inform 2013
110
12

Protein structures and information extraction from biological texts: the PASTA system.
R Gaizauskas, G Demetriou, P J Artymiuk, P Willett. Bioinformatics 2003
46
12




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.