Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Ali Pesaranghader. J Am Med Inform Assoc 2019
Times Cited: 8
Times Cited: 8
Times Cited
Times Co-cited
Similarity
Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
Guergana K Savova, James J Masanz, Philip V Ogren, Jiaping Zheng, Sunghwan Sohn, Karin C Kipper-Schuler, Christopher G Chute. J Am Med Inform Assoc 2010
37
MetaMap Lite: an evaluation of a new Java implementation of MetaMap.
Dina Demner-Fushman, Willie J Rogers, Alan R Aronson. J Am Med Inform Assoc 2017
Dina Demner-Fushman, Willie J Rogers, Alan R Aronson. J Am Med Inform Assoc 2017
37
NCBI disease corpus: a resource for disease name recognition and concept normalization.
Rezarta Islamaj Doğan, Robert Leaman, Zhiyong Lu. J Biomed Inform 2014
Rezarta Islamaj Doğan, Robert Leaman, Zhiyong Lu. J Biomed Inform 2014
37
CNN-based ranking for biomedical entity normalization.
Haodi Li, Qingcai Chen, Buzhou Tang, Xiaolong Wang, Hua Xu, Baohua Wang, Dong Huang. BMC Bioinformatics 2017
Haodi Li, Qingcai Chen, Buzhou Tang, Xiaolong Wang, Hua Xu, Baohua Wang, Dong Huang. BMC Bioinformatics 2017
37
Semantic annotation in biomedicine: the current landscape.
Jelena Jovanović, Ebrahim Bagheri. J Biomed Semantics 2017
Jelena Jovanović, Ebrahim Bagheri. J Biomed Semantics 2017
37
Word sense disambiguation across two domains: biomedical literature and clinical notes.
Guergana K Savova, Anni R Coden, Igor L Sominsky, Rie Johnson, Philip V Ogren, Piet C de Groen, Christopher G Chute. J Biomed Inform 2008
Guergana K Savova, Anni R Coden, Igor L Sominsky, Rie Johnson, Philip V Ogren, Piet C de Groen, Christopher G Chute. J Biomed Inform 2008
37
A long journey to short abbreviations: developing an open-source framework for clinical abbreviation recognition and disambiguation (CARD).
Yonghui Wu, Joshua C Denny, S Trent Rosenbloom, Randolph A Miller, Dario A Giuse, Lulu Wang, Carmelo Blanquicett, Ergin Soysal, Jun Xu, Hua Xu. J Am Med Inform Assoc 2017
Yonghui Wu, Joshua C Denny, S Trent Rosenbloom, Randolph A Miller, Dario A Giuse, Lulu Wang, Carmelo Blanquicett, Ergin Soysal, Jun Xu, Hua Xu. J Am Med Inform Assoc 2017
37
The Unified Medical Language System (UMLS): integrating biomedical terminology.
Olivier Bodenreider. Nucleic Acids Res 2004
Olivier Bodenreider. Nucleic Acids Res 2004
37
A sense inventory for clinical abbreviations and acronyms created using clinical notes and medical dictionary resources.
Sungrim Moon, Serguei Pakhomov, Nathan Liu, James O Ryan, Genevieve B Melton. J Am Med Inform Assoc 2014
Sungrim Moon, Serguei Pakhomov, Nathan Liu, James O Ryan, Genevieve B Melton. J Am Med Inform Assoc 2014
37
Lexical methods for managing variation in biomedical terminologies.
A T McCray, S Srinivasan, A C Browne. Proc Annu Symp Comput Appl Med Care 1994
A T McCray, S Srinivasan, A C Browne. Proc Annu Symp Comput Appl Med Care 1994
25
BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, Zhiyong Lu. Database (Oxford) 2016
Jiao Li, Yueping Sun, Robin J Johnson, Daniela Sciaky, Chih-Hsuan Wei, Robert Leaman, Allan Peter Davis, Carolyn J Mattingly, Thomas C Wiegers, Zhiyong Lu. Database (Oxford) 2016
25
BioBERT: a pre-trained biomedical language representation model for biomedical text mining.
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
Jinhyuk Lee, Wonjin Yoon, Sungdong Kim, Donghyeon Kim, Sunkyu Kim, Chan Ho So, Jaewoo Kang. Bioinformatics 2020
25
Biomedical word sense disambiguation with bidirectional long short-term memory and attention-based neural networks.
Canlin Zhang, Daniel Biś, Xiuwen Liu, Zhe He. BMC Bioinformatics 2019
Canlin Zhang, Daniel Biś, Xiuwen Liu, Zhe He. BMC Bioinformatics 2019
50
Co-occurrence graphs for word sense disambiguation in the biomedical domain.
Andres Duque, Mark Stevenson, Juan Martinez-Romo, Lourdes Araujo. Artif Intell Med 2018
Andres Duque, Mark Stevenson, Juan Martinez-Romo, Lourdes Araujo. Artif Intell Med 2018
25
A study of deep learning approaches for medication and adverse drug event extraction from clinical text.
Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang,[...]. J Am Med Inform Assoc 2020
Qiang Wei, Zongcheng Ji, Zhiheng Li, Jingcheng Du, Jingqi Wang, Jun Xu, Yang Xiang, Firat Tiryaki, Stephen Wu, Yaoyun Zhang,[...]. J Am Med Inform Assoc 2020
25
Evaluating the state of the art in disorder recognition and normalization of the clinical narrative.
Sameer Pradhan, Noémie Elhadad, Brett R South, David Martinez, Lee Christensen, Amy Vogel, Hanna Suominen, Wendy W Chapman, Guergana Savova. J Am Med Inform Assoc 2015
Sameer Pradhan, Noémie Elhadad, Brett R South, David Martinez, Lee Christensen, Amy Vogel, Hanna Suominen, Wendy W Chapman, Guergana Savova. J Am Med Inform Assoc 2015
25
Unified medical language system coverage of emergency-medicine chief complaints.
Debbie A Travers, Stephanie W Haas. Acad Emerg Med 2006
Debbie A Travers, Stephanie W Haas. Acad Emerg Med 2006
25
Exploiting MeSH indexing in MEDLINE to generate a data set for word sense disambiguation.
Antonio J Jimeno-Yepes, Bridget T McInnes, Alan R Aronson. BMC Bioinformatics 2011
Antonio J Jimeno-Yepes, Bridget T McInnes, Alan R Aronson. BMC Bioinformatics 2011
25
CLAMP - a toolkit for efficiently building customized clinical natural language processing pipelines.
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu. J Am Med Inform Assoc 2018
Ergin Soysal, Jingqi Wang, Min Jiang, Yonghui Wu, Serguei Pakhomov, Hongfang Liu, Hua Xu. J Am Med Inform Assoc 2018
25
MIMIC-III, a freely accessible critical care database.
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
Alistair E W Johnson, Tom J Pollard, Lu Shen, Li-Wei H Lehman, Mengling Feng, Mohammad Ghassemi, Benjamin Moody, Peter Szolovits, Leo Anthony Celi, Roger G Mark. Sci Data 2016
25
MCN: A comprehensive corpus for medical concept normalization.
Yen-Fu Luo, Weiyi Sun, Anna Rumshisky. J Biomed Inform 2019
Yen-Fu Luo, Weiyi Sun, Anna Rumshisky. J Biomed Inform 2019
25
Developing a test collection for biomedical word sense disambiguation.
M Weeber, J G Mork, A R Aronson. Proc AMIA Symp 2001
M Weeber, J G Mork, A R Aronson. Proc AMIA Symp 2001
25
A convolutional route to abbreviation disambiguation in clinical text.
Venkata Joopudi, Bharath Dandala, Murthy Devarakonda. J Biomed Inform 2018
Venkata Joopudi, Bharath Dandala, Murthy Devarakonda. J Biomed Inform 2018
25
Medical concept normalization in social media posts with recurrent neural networks.
Elena Tutubalina, Zulfat Miftahutdinov, Sergey Nikolenko, Valentin Malykh. J Biomed Inform 2018
Elena Tutubalina, Zulfat Miftahutdinov, Sergey Nikolenko, Valentin Malykh. J Biomed Inform 2018
25
simDEF: definition-based semantic similarity measure of gene ontology terms for functional similarity analysis of genes.
Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Robert G Beiko. Bioinformatics 2016
Ahmad Pesaranghader, Stan Matwin, Marina Sokolova, Robert G Beiko. Bioinformatics 2016
25
Sophia: A Expedient UMLS Concept Extraction Annotator.
Guy Divita, Qing T Zeng, Adi V Gundlapalli, Scott Duvall, Jonathan Nebeker, Matthew H Samore. AMIA Annu Symp Proc 2014
Guy Divita, Qing T Zeng, Adi V Gundlapalli, Scott Duvall, Jonathan Nebeker, Matthew H Samore. AMIA Annu Symp Proc 2014
12
A simple algorithm for identifying negated findings and diseases in discharge summaries.
W W Chapman, W Bridewell, P Hanbury, G F Cooper, B G Buchanan. J Biomed Inform 2001
W W Chapman, W Bridewell, P Hanbury, G F Cooper, B G Buchanan. J Biomed Inform 2001
12
Enhanced LexSynonym Acquisition for Effective UMLS Concept Mapping.
Chris J Lu, Destinee Tormey, Lynn McCreedy, Allen C Browne. Stud Health Technol Inform 2017
Chris J Lu, Destinee Tormey, Lynn McCreedy, Allen C Browne. Stud Health Technol Inform 2017
33
Interactive use of online health resources: a comparison of consumer and professional questions.
Kirk Roberts, Dina Demner-Fushman. J Am Med Inform Assoc 2016
Kirk Roberts, Dina Demner-Fushman. J Am Med Inform Assoc 2016
12
Spell checker for consumer language (CSpell).
Chris J Lu, Alan R Aronson, Sonya E Shooshan, Dina Demner-Fushman. J Am Med Inform Assoc 2019
Chris J Lu, Alan R Aronson, Sonya E Shooshan, Dina Demner-Fushman. J Am Med Inform Assoc 2019
20
The effect of textual variation on concept based information retrieval.
A R Aronson. Proc AMIA Annu Fall Symp 1996
A R Aronson. Proc AMIA Annu Fall Symp 1996
12
Consumer health information and question answering: helping consumers find answers to their health-related information needs.
Dina Demner-Fushman, Yassine Mrabet, Asma Ben Abacha. J Am Med Inform Assoc 2020
Dina Demner-Fushman, Yassine Mrabet, Asma Ben Abacha. J Am Med Inform Assoc 2020
12
12
Essie: a concept-based search engine for structured biomedical text.
Nicholas C Ide, Russell F Loane, Dina Demner-Fushman. J Am Med Inform Assoc 2007
Nicholas C Ide, Russell F Loane, Dina Demner-Fushman. J Am Med Inform Assoc 2007
12
Using Lexical tools to convert Unicode characters to ASCII.
Chris J Lu, Allen C Browne, Guy Divita. AMIA Annu Symp Proc 2008
Chris J Lu, Allen C Browne, Guy Divita. AMIA Annu Symp Proc 2008
100
Heuristic sample selection to minimize reference standard training set for a part-of-speech tagger.
Kaihong Liu, Wendy Chapman, Rebecca Hwa, Rebecca S Crowley. J Am Med Inform Assoc 2007
Kaihong Liu, Wendy Chapman, Rebecca Hwa, Rebecca S Crowley. J Am Med Inform Assoc 2007
12
Exploring and developing consumer health vocabularies.
Qing T Zeng, Tony Tse. J Am Med Inform Assoc 2006
Qing T Zeng, Tony Tse. J Am Med Inform Assoc 2006
12
The Unified Medical Language System: an informatics research collaboration.
B L Humphreys, D A Lindberg, H M Schoolman, G O Barnett. J Am Med Inform Assoc 1998
B L Humphreys, D A Lindberg, H M Schoolman, G O Barnett. J Am Med Inform Assoc 1998
12
UMLS knowledge for biomedical language processing.
A T McCray, A R Aronson, A C Browne, T C Rindflesch, A Razi, S Srinivasan. Bull Med Libr Assoc 1993
A T McCray, A R Aronson, A C Browne, T C Rindflesch, A Razi, S Srinivasan. Bull Med Libr Assoc 1993
12
The importance of consumer- and patient-oriented perspectives in biomedical and health informatics.
Suzanne Bakken. J Am Med Inform Assoc 2019
Suzanne Bakken. J Am Med Inform Assoc 2019
25
An exploration of the properties of the CORE problem list subset and how it facilitates the implementation of SNOMED CT.
Kin Wah Fung, Julia Xu. J Am Med Inform Assoc 2015
Kin Wah Fung, Julia Xu. J Am Med Inform Assoc 2015
12
GENIA corpus--semantically annotated corpus for bio-textmining.
J-D Kim, T Ohta, Y Tateisi, J Tsujii. Bioinformatics 2003
J-D Kim, T Ohta, Y Tateisi, J Tsujii. Bioinformatics 2003
12
The EU-ADR corpus: annotated drugs, diseases, targets, and their relationships.
Erik M van Mulligen, Annie Fourrier-Reglat, David Gurwitz, Mariam Molokhia, Ainhoa Nieto, Gianluca Trifiro, Jan A Kors, Laura I Furlong. J Biomed Inform 2012
Erik M van Mulligen, Annie Fourrier-Reglat, David Gurwitz, Mariam Molokhia, Ainhoa Nieto, Gianluca Trifiro, Jan A Kors, Laura I Furlong. J Biomed Inform 2012
12
Integrated text mining and chemoinformatics analysis associates diet to health benefit at molecular level.
Kasper Jensen, Gianni Panagiotou, Irene Kouskoumvekaki. PLoS Comput Biol 2014
Kasper Jensen, Gianni Panagiotou, Irene Kouskoumvekaki. PLoS Comput Biol 2014
12
What makes a gene name? Named entity recognition in the biomedical literature.
Ulf Leser, Jörg Hakenberg. Brief Bioinform 2005
Ulf Leser, Jörg Hakenberg. Brief Bioinform 2005
12
The DDI corpus: an annotated corpus with pharmacological substances and drug-drug interactions.
María Herrero-Zazo, Isabel Segura-Bedmar, Paloma Martínez, Thierry Declerck. J Biomed Inform 2013
María Herrero-Zazo, Isabel Segura-Bedmar, Paloma Martínez, Thierry Declerck. J Biomed Inform 2013
12
Protein structures and information extraction from biological texts: the PASTA system.
R Gaizauskas, G Demetriou, P J Artymiuk, P Willett. Bioinformatics 2003
R Gaizauskas, G Demetriou, P J Artymiuk, P Willett. Bioinformatics 2003
12
tmChem: a high performance approach for chemical named entity recognition and normalization.
Robert Leaman, Chih-Hsuan Wei, Zhiyong Lu. J Cheminform 2015
Robert Leaman, Chih-Hsuan Wei, Zhiyong Lu. J Cheminform 2015
12
Disease named entity recognition by combining conditional random fields and bidirectional recurrent neural networks.
Qikang Wei, Tao Chen, Ruifeng Xu, Yulan He, Lin Gui. Database (Oxford) 2016
Qikang Wei, Tao Chen, Ruifeng Xu, Yulan He, Lin Gui. Database (Oxford) 2016
12
Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.