A citation-based method for searching scientific literature

Shankar Mandal, Yusuke Kawamoto, Zhizhou Yue, Kaori Hashiya, Yunxi Cui, Toshikazu Bando, Shankar Pandey, Mohammed Enamul Hoque, Mohammad Akter Hossain, Hiroshi Sugiyama, Hanbin Mao. Nucleic Acids Res 2019
Times Cited: 7







List of co-cited articles
65 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Recent Progress of Targeted G-Quadruplex-Preferred Ligands Toward Cancer Therapy.
Sefan Asamitsu, Shunsuke Obata, Zutao Yu, Toshikazu Bando, Hiroshi Sugiyama. Molecules 2019
96
42

Highly prevalent putative quadruplex sequence motifs in human DNA.
Alan K Todd, Matthew Johnston, Stephen Neidle. Nucleic Acids Res 2005
649
42

Prevalence of quadruplexes in the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2005
42

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
640
42

Structure of an unprecedented G-quadruplex scaffold in the human c-kit promoter.
Anh Tuân Phan, Vitaly Kuryavyi, Sarah Burge, Stephen Neidle, Dinshaw J Patel. J Am Chem Soc 2007
301
42

Targeting G-quadruplexes in gene promoters: a novel anticancer strategy?
Shankar Balasubramanian, Laurence H Hurley, Stephen Neidle. Nat Rev Drug Discov 2011
963
42

Putative DNA quadruplex formation within the human c-kit oncogene.
Sarah Rankin, Anthony P Reszka, Julian Huppert, Mire Zloh, Gary N Parkinson, Alan K Todd, Sylvain Ladame, Shankar Balasubramanian, Stephen Neidle. J Am Chem Soc 2005
399
42

Quantitative visualization of DNA G-quadruplex structures in human cells.
Giulia Biffi, David Tannahill, John McCafferty, Shankar Balasubramanian. Nat Chem 2013
42


DNA G-quadruplexes in the human genome: detection, functions and therapeutic potential.
Robert Hänsel-Hertsch, Marco Di Antonio, Shankar Balasubramanian. Nat Rev Mol Cell Biol 2017
324
28

A single-molecule platform for investigation of interactions between G-quadruplexes and small-molecule ligands.
Deepak Koirala, Soma Dhakal, Beth Ashbridge, Yuta Sannohe, Raphaël Rodriguez, Hiroshi Sugiyama, Shankar Balasubramanian, Hanbin Mao. Nat Chem 2011
123
28

Diarylethynyl amides that recognize the parallel conformation of genomic promoter DNA G-quadruplexes.
Jyotirmayee Dash, Pravin S Shirude, Shang-Te Danny Hsu, Shankar Balasubramanian. J Am Chem Soc 2008
109
28

G-quadruplex-binding benzo[a]phenoxazines down-regulate c-KIT expression in human gastric carcinoma cells.
Keith I E McLuckie, Zoë A E Waller, Deborah A Sanders, David Alves, Raphaël Rodriguez, Jyotirmayee Dash, Grahame J McKenzie, Ashok R Venkitaraman, Shankar Balasubramanian. J Am Chem Soc 2011
94
28

Sequence variant (CTAGGG)n in the human telomere favors a G-quadruplex structure containing a G.C.G.C tetrad.
Kah Wai Lim, Patrizia Alberti, Aurore Guédin, Laurent Lacroix, Jean-François Riou, Nicola J Royle, Jean-Louis Mergny, Anh Tuân Phan. Nucleic Acids Res 2009
81
28

Therapeutic gene regulation using pyrrole-imidazole polyamides.
Zutao Yu, Ganesh N Pandian, Takuya Hidaka, Hiroshi Sugiyama. Adv Drug Deliv Rev 2019
9
28



Recognition of the DNA minor groove by pyrrole-imidazole polyamides.
Peter B Dervan, Benjamin S Edelson. Curr Opin Struct Biol 2003
468
28

Therapeutic targeting of c-KIT in cancer.
Leonie K Ashman, Renate Griffith. Expert Opin Investig Drugs 2013
89
28

Folding Kinetics of G-Quadruplexes: Duplex Stem Loops Drive and Accelerate G-Quadruplex Folding.
Thi Quynh Ngoc Nguyen, Kah Wai Lim, Anh Tuân Phan. J Phys Chem B 2020
6
33

Duplex-Guided Refolding into Novel G-Quadruplex (3+1) Hybrid Conformations.
Beatrice Karg, Swantje Mohr, Klaus Weisz. Angew Chem Int Ed Engl 2019
11
28

Ligand Design to Acquire Specificity to Intended G-Quadruplex Structures.
Sefan Asamitsu, Toshikazu Bando, Hiroshi Sugiyama. Chemistry 2019
52
28

Charge conduction properties of a parallel-stranded DNA G-quadruplex: implications for chromosomal oxidative damage.
Yu Chuan Huang, Alan K H Cheng, Hua-Zhong Yu, Dipankar Sen. Biochemistry 2009
29
28


Small-molecule interaction with a five-guanine-tract G-quadruplex structure from the human MYC promoter.
Anh Tuân Phan, Vitaly Kuryavyi, Hai Yan Gaw, Dinshaw J Patel. Nat Chem Biol 2005
328
28


Simultaneous Binding of Hybrid Molecules Constructed with Dual DNA-Binding Components to a G-Quadruplex and Its Proximal Duplex.
Sefan Asamitsu, Shunsuke Obata, Anh Tuân Phan, Kaori Hashiya, Toshikazu Bando, Hiroshi Sugiyama. Chemistry 2018
18
28

G-Quadruplex Secondary Structure Obtained from Circular Dichroism Spectroscopy.
Rafael Del Villar-Guerra, John O Trent, Jonathan B Chaires. Angew Chem Int Ed Engl 2018
127
28

The Xplor-NIH NMR molecular structure determination package.
Charles D Schwieters, John J Kuszewski, Nico Tjandra, G Marius Clore. J Magn Reson 2003
28

High-resolution three-dimensional NMR structure of the KRAS proto-oncogene promoter reveals key features of a G-quadruplex involved in transcriptional regulation.
Abdelaziz Kerkour, Julien Marquevielle, Stefaniia Ivashchenko, Liliya A Yatsunyk, Jean-Louis Mergny, Gilmar F Salgado. J Biol Chem 2017
31
28

Optimized end-stacking provides specificity of N-methyl mesoporphyrin IX for human telomeric G-quadruplex DNA.
John M Nicoludis, Stephen T Miller, Philip D Jeffrey, Steven P Barrett, Paul R Rablen, Thomas J Lawton, Liliya A Yatsunyk. J Am Chem Soc 2012
113
28

NMR Structure of a Triangulenium-Based Long-Lived Fluorescence Probe Bound to a G-Quadruplex.
Anita Kotar, Baifan Wang, Arun Shivalingam, Jorge Gonzalez-Garcia, Ramon Vilar, Janez Plavec. Angew Chem Int Ed Engl 2016
29
28


Orienting tetramolecular G-quadruplex formation: the quest for the elusive RNA antiparallel quadruplex.
Oscar Mendoza, Massimiliano Porrini, Gilmar F Salgado, Valérie Gabelica, Jean-Louis Mergny. Chemistry 2015
16
28

Structural basis for telomeric G-quadruplex targeting by naphthalene diimide ligands.
Gavin W Collie, Rossella Promontorio, Sonja M Hampel, Marialuisa Micco, Stephen Neidle, Gary N Parkinson. J Am Chem Soc 2012
143
28

Coexistence of two distinct G-quadruplex conformations in the hTERT promoter.
Kah Wai Lim, Laurent Lacroix, Doris Jia En Yue, Joefina Kim Cheow Lim, Jocelyn Mei Wen Lim, Anh Tuân Phan. J Am Chem Soc 2010
100
28

Solution structure of a G-quadruplex bound to the bisquinolinium compound Phen-DC(3).
Wan Jun Chung, Brahim Heddi, Florian Hamon, Marie-Paule Teulade-Fichou, Anh Tuân Phan. Angew Chem Int Ed Engl 2014
99
28


The crystal structure of human telomeric DNA complexed with berberine: an interesting case of stacked ligand to G-tetrad ratio higher than 1:1.
Carla Bazzicalupi, Marta Ferraroni, Anna Rita Bilia, Francesca Scheggi, Paola Gratteri. Nucleic Acids Res 2013
88
28

Helix formation by guanylic acid.
M GELLERT, M N LIPSETT, D R DAVIES. Proc Natl Acad Sci U S A 1962
974
28

Tri-G-quadruplex: controlled assembly of a G-quadruplex structure from three G-rich strands.
Jun Zhou, Anne Bourdoncle, Frédéric Rosu, Valérie Gabelica, Jean-Louis Mergny. Angew Chem Int Ed Engl 2012
37
28

DNA tetraplex formation in the control region of c-myc.
T Simonsson, P Pecinka, M Kubista. Nucleic Acids Res 1998
452
28

The first successful observation of in-cell NMR signals of DNA and RNA in living human cells.
Yudai Yamaoki, Ayaka Kiyoishi, Masayuki Miyake, Fumi Kano, Masayuki Murata, Takashi Nagata, Masato Katahira. Phys Chem Chem Phys 2018
16
28

Structure of two G-quadruplexes in equilibrium in the KRAS promoter.
Julien Marquevielle, Coralie Robert, Olivier Lagrabette, Mona Wahid, Anne Bourdoncle, Luigi E Xodo, Jean-Louis Mergny, Gilmar F Salgado. Nucleic Acids Res 2020
13
28

High resolution crystal structure of a KRAS promoter G-quadruplex reveals a dimer with extensive poly-A π-stacking interactions for small-molecule recognition.
Arnold Ou, Jason W Schmidberger, Katie A Wilson, Cameron W Evans, Jessica A Hargreaves, Melanie Grigg, Megan L O'Mara, K Swaminathan Iyer, Charles S Bond, Nicole M Smith. Nucleic Acids Res 2020
8
28

Solution structures of multiple G-quadruplex complexes induced by a platinum(II)-based tripod reveal dynamic binding.
Wenting Liu, Yi-Fang Zhong, Liu-Yi Liu, Chu-Tong Shen, Wenjuan Zeng, Fuyi Wang, Danzhou Yang, Zong-Wan Mao. Nat Commun 2018
30
28

Duplex stem-loop-containing quadruplex motifs in the human genome: a combined genomic and structural study.
Kah Wai Lim, Piroon Jenjaroenpun, Zhen Jie Low, Zi Jian Khong, Yi Siang Ng, Vladimir Andreevich Kuznetsov, Anh Tuân Phan. Nucleic Acids Res 2015
27
28

Joining of multiple duplex stems at a single quadruplex loop.
Kah Wai Lim, Thi Quynh Ngoc Nguyen, Anh Tuân Phan. J Am Chem Soc 2014
23
28

Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
28

Structural Insights into the Quadruplex-Duplex 3' Interface Formed from a Telomeric Repeat: A Potential Molecular Target.
Irene Russo Krauss, Sneha Ramaswamy, Stephen Neidle, Shozeb Haider, Gary N Parkinson. J Am Chem Soc 2016
33
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.