A citation-based method for searching scientific literature

Julia Alles, Tobias Fehlmann, Ulrike Fischer, Christina Backes, Valentina Galata, Marie Minet, Martin Hart, Masood Abu-Halima, Friedrich A Grässer, Hans-Peter Lenhof, Andreas Keller, Eckart Meese. Nucleic Acids Res 2019
Times Cited: 211







List of co-cited articles
528 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



miRBase: from microRNA sequences to function.
Ana Kozomara, Maria Birgaoanu, Sam Griffiths-Jones. Nucleic Acids Res 2019
23

Most mammalian mRNAs are conserved targets of microRNAs.
Robin C Friedman, Kyle Kai-How Farh, Christopher B Burge, David P Bartel. Genome Res 2009
22

Metazoan MicroRNAs.
David P Bartel. Cell 2018
19

Overview of MicroRNA Biogenesis, Mechanisms of Actions, and Circulation.
Jacob O'Brien, Heyam Hayder, Yara Zayed, Chun Peng. Front Endocrinol (Lausanne) 2018
17



Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
10


The microRNA spectrum in 12 body fluids.
Jessica A Weber, David H Baxter, Shile Zhang, David Y Huang, Kuo How Huang, Ming Jen Lee, David J Galas, Kai Wang. Clin Chem 2010
8

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.
Mark D Robinson, Davis J McCarthy, Gordon K Smyth. Bioinformatics 2010
8


Prediction of mammalian microRNA targets.
Benjamin P Lewis, I-hung Shih, Matthew W Jones-Rhoades, David P Bartel, Christopher B Burge. Cell 2003
8

Regulation of microRNA biogenesis.
Minju Ha, V Narry Kim. Nat Rev Mol Cell Biol 2014
7


miRBase: microRNA sequences, targets and gene nomenclature.
Sam Griffiths-Jones, Russell J Grocock, Stijn van Dongen, Alex Bateman, Anton J Enright. Nucleic Acids Res 2006
7

miEAA 2.0: integrating multi-species microRNA enrichment analysis and workflow management systems.
Fabian Kern, Tobias Fehlmann, Jeffrey Solomon, Louisa Schwed, Nadja Grammes, Christina Backes, Kendall Van Keuren-Jensen, David Wesley Craig, Eckart Meese, Andreas Keller. Nucleic Acids Res 2020
44
15

The role of MicroRNAs in human cancer.
Yong Peng, Carlo M Croce. Signal Transduct Target Ther 2016
949
7

A Uniform System for the Annotation of Vertebrate microRNA Genes and the Evolution of the Human microRNAome.
Bastian Fromm, Tyler Billipp, Liam E Peck, Morten Johansen, James E Tarver, Benjamin L King, James M Newcomb, Lorenzo F Sempere, Kjersti Flatmark, Eivind Hovig,[...]. Annu Rev Genet 2015
301
7

Regulation of microRNA function in animals.
Luca F R Gebert, Ian J MacRae. Nat Rev Mol Cell Biol 2019
868
7

miRNAs as Biomarkers in Disease: Latest Findings Regarding Their Role in Diagnosis and Prognosis.
Carmen Elena Condrat, Dana Claudia Thompson, Madalina Gabriela Barbu, Oana Larisa Bugnar, Andreea Boboc, Dragos Cretoiu, Nicolae Suciu, Sanda Maria Cretoiu, Silviu Cristian Voinea. Cells 2020
253
7

Regulation of microRNA biogenesis and its crosstalk with other cellular pathways.
Thomas Treiber, Nora Treiber, Gunter Meister. Nat Rev Mol Cell Biol 2019
525
7


The functions of animal microRNAs.
Victor Ambros. Nature 2004
6

MicroRNA: Biogenesis, Function and Role in Cancer.
Leigh-Ann Macfarlane, Paul R Murphy. Curr Genomics 2010
919
6


miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.
Marc R Friedländer, Sebastian D Mackowiak, Na Li, Wei Chen, Nikolaus Rajewsky. Nucleic Acids Res 2012
6

Distribution of miRNA expression across human tissues.
Nicole Ludwig, Petra Leidinger, Kurt Becker, Christina Backes, Tobias Fehlmann, Christian Pallasch, Steffi Rheinheimer, Benjamin Meder, Cord Stähler, Eckart Meese,[...]. Nucleic Acids Res 2016
519
6

Global cancer statistics 2018: GLOBOCAN estimates of incidence and mortality worldwide for 36 cancers in 185 countries.
Freddie Bray, Jacques Ferlay, Isabelle Soerjomataram, Rebecca L Siegel, Lindsey A Torre, Ahmedin Jemal. CA Cancer J Clin 2018
6

The Drosha-DGCR8 complex in primary microRNA processing.
Jinju Han, Yoontae Lee, Kyu-Hyun Yeom, Young-Kook Kim, Hua Jin, V Narry Kim. Genes Dev 2004
6

Argonaute2 complexes carry a population of circulating microRNAs independent of vesicles in human plasma.
Jason D Arroyo, John R Chevillet, Evan M Kroh, Ingrid K Ruf, Colin C Pritchard, Donald F Gibson, Patrick S Mitchell, Christopher F Bennett, Era L Pogosova-Agadjanyan, Derek L Stirewalt,[...]. Proc Natl Acad Sci U S A 2011
5

Many roads to maturity: microRNA biogenesis pathways and their regulation.
Julia Winter, Stephanie Jung, Sarina Keller, Richard I Gregory, Sven Diederichs. Nat Cell Biol 2009
5

Widespread changes in protein synthesis induced by microRNAs.
Matthias Selbach, Björn Schwanhäusser, Nadine Thierfelder, Zhuo Fang, Raya Khanin, Nikolaus Rajewsky. Nature 2008
5

MirGeneDB 2.0: the metazoan microRNA complement.
Bastian Fromm, Diana Domanska, Eirik Høye, Vladimir Ovchinnikov, Wenjing Kang, Ernesto Aparicio-Puerta, Morten Johansen, Kjersti Flatmark, Anthony Mathelier, Eivind Hovig,[...]. Nucleic Acids Res 2020
95
5

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
Ben Langmead, Cole Trapnell, Mihai Pop, Steven L Salzberg. Genome Biol 2009
5

miRCarta: a central repository for collecting miRNA candidates.
Christina Backes, Tobias Fehlmann, Fabian Kern, Tim Kehl, Hans-Peter Lenhof, Eckart Meese, Andreas Keller. Nucleic Acids Res 2018
53
9

MicroRNA expression profiles classify human cancers.
Jun Lu, Gad Getz, Eric A Miska, Ezequiel Alvarez-Saavedra, Justin Lamb, David Peck, Alejandro Sweet-Cordero, Benjamin L Ebert, Raymond H Mak, Adolfo A Ferrando,[...]. Nature 2005
5

Regulation of mRNA translation and stability by microRNAs.
Marc Robert Fabian, Nahum Sonenberg, Witold Filipowicz. Annu Rev Biochem 2010
5

OncomiR or Tumor Suppressor? The Duplicity of MicroRNAs in Cancer.
Alexander A Svoronos, Donald M Engelman, Frank J Slack. Cancer Res 2016
414
5

Exosome-mediated transfer of mRNAs and microRNAs is a novel mechanism of genetic exchange between cells.
Hadi Valadi, Karin Ekström, Apostolos Bossios, Margareta Sjöstrand, James J Lee, Jan O Lötvall. Nat Cell Biol 2007
5


The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
5

Mechanisms of post-transcriptional regulation by microRNAs: are the answers in sight?
Witold Filipowicz, Suvendra N Bhattacharyya, Nahum Sonenberg. Nat Rev Genet 2008
5

A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA.
G Hutvágner, J McLachlan, A E Pasquinelli, E Bálint, T Tuschl, P D Zamore. Science 2001
4

MicroRNA genes are transcribed by RNA polymerase II.
Yoontae Lee, Minju Kim, Jinju Han, Kyu-Hyun Yeom, Sanghyuk Lee, Sung Hee Baek, V Narry Kim. EMBO J 2004
4

Mapping the human miRNA interactome by CLASH reveals frequent noncanonical binding.
Aleksandra Helwak, Grzegorz Kudla, Tatiana Dudnakova, David Tollervey. Cell 2013
801
4

Assessing sample and miRNA profile quality in serum and plasma or other biofluids.
Thorarinn Blondal, Søren Jensby Nielsen, Adam Baker, Ditte Andreasen, Peter Mouritzen, Maria Wrang Teilum, Ina K Dahlsveen. Methods 2013
433
4


Human MicroRNA targets.
Bino John, Anton J Enright, Alexei Aravin, Thomas Tuschl, Chris Sander, Debora S Marks. PLoS Biol 2004
4

Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs.
Tobias Fehlmann, Christina Backes, Mustafa Kahraman, Jan Haas, Nicole Ludwig, Andreas E Posch, Maximilian L Würstle, Matthias Hübenthal, Andre Franke, Benjamin Meder,[...]. Nucleic Acids Res 2017
45
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.