A citation-based method for searching scientific literature

Eleonora Petti, Valentina Buemi, Antonina Zappone, Odessa Schillaci, Pamela Veneziano Broccia, Roberto Dinami, Silvia Matteoni, Roberta Benetti, Stefan Schoeftner. Nat Commun 2019
Times Cited: 28







List of co-cited articles
261 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNaseH1 regulates TERRA-telomeric DNA hybrids and telomere maintenance in ALT tumour cells.
Rajika Arora, Yongwoo Lee, Harry Wischnewski, Catherine M Brun, Tobias Schwarz, Claus M Azzalin. Nat Commun 2014
196
28

The Emerging Roles of TERRA in Telomere Maintenance and Genome Stability.
Nicole Bettin, Claudio Oss Pegorar, Emilio Cusanelli. Cells 2019
49
25


Telomeric RNA-DNA hybrids affect telomere-length dynamics and senescence.
Bettina Balk, André Maicher, Martina Dees, Julia Klermund, Sarah Luke-Glaser, Katharina Bender, Brian Luke. Nat Struct Mol Biol 2013
177
21

CpG-island promoters drive transcription of human telomeres.
Solomon G Nergadze, Benjamin O Farnung, Harry Wischnewski, Lela Khoriauli, Valerio Vitelli, Raghav Chawla, Elena Giulotto, Claus M Azzalin. RNA 2009
147
21

Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
206
21

Functional characterization of the TERRA transcriptome at damaged telomeres.
Antonio Porro, Sascha Feuerhahn, Julien Delafontaine, Harold Riethman, Jacques Rougemont, Joachim Lingner. Nat Commun 2014
130
21

The DBHS proteins SFPQ, NONO and PSPC1: a multipurpose molecular scaffold.
Gavin J Knott, Charles S Bond, Archa H Fox. Nucleic Acids Res 2016
105
21

Telomere Length Determines TERRA and R-Loop Regulation through the Cell Cycle.
Marco Graf, Diego Bonetti, Arianna Lockhart, Kamar Serhal, Vanessa Kellner, André Maicher, Pascale Jolivet, Maria Teresa Teixeira, Brian Luke. Cell 2017
109
17

TRF1 participates in chromosome end protection by averting TRF2-dependent telomeric R loops.
Yong Woo Lee, Rajika Arora, Harry Wischnewski, Claus M Azzalin. Nat Struct Mol Biol 2018
31
17

TERRA RNA Antagonizes ATRX and Protects Telomeres.
Hsueh-Ping Chu, Catherine Cifuentes-Rojas, Barry Kesner, Eric Aeby, Hun-Goo Lee, Chunyao Wei, Hyun Jung Oh, Myriam Boukhali, Wilhelm Haas, Jeannie T Lee. Cell 2017
99
17

Telomeric repeat containing RNA and RNA surveillance factors at mammalian chromosome ends.
Claus M Azzalin, Patrick Reichenbach, Lela Khoriauli, Elena Giulotto, Joachim Lingner. Science 2007
809
17

Involvement of Matrin 3 and SFPQ/NONO in the DNA damage response.
Maayan Salton, Yaniv Lerenthal, Shih-Ya Wang, David J Chen, Yosef Shiloh. Cell Cycle 2010
132
17


TERRA RNA binding to TRF2 facilitates heterochromatin formation and ORC recruitment at telomeres.
Zhong Deng, Julie Norseen, Andreas Wiedmer, Harold Riethman, Paul M Lieberman. Mol Cell 2009
345
17

RAD51-dependent recruitment of TERRA lncRNA to telomeres through R-loops.
Marianna Feretzaki, Michaela Pospisilova, Rita Valador Fernandes, Thomas Lunardi, Lumir Krejci, Joachim Lingner. Nature 2020
25
20

RNase H enables efficient repair of R-loop induced DNA damage.
Jeremy D Amon, Douglas Koshland. Elife 2016
63
14

Alternative lengthening of human telomeres is a conservative DNA replication process with features of break-induced replication.
Fani-Marlen Roumelioti, Sotirios K Sotiriou, Vasiliki Katsini, Maria Chiourea, Thanos D Halazonetis, Sarantis Gagos. EMBO Rep 2016
78
14

TERRA recruitment of polycomb to telomeres is essential for histone trymethylation marks at telomeric heterochromatin.
Juan J Montero, Isabel López-Silanes, Diego Megías, Mario F Fraga, Álvaro Castells-García, Maria A Blasco. Nat Commun 2018
52
14


Telomere length regulates TERRA levels through increased trimethylation of telomeric H3K9 and HP1α.
Nausica Arnoult, Amandine Van Beneden, Anabelle Decottignies. Nat Struct Mol Biol 2012
151
14

TERRA and hnRNPA1 orchestrate an RPA-to-POT1 switch on telomeric single-stranded DNA.
Rachel Litman Flynn, Richard C Centore, Roderick J O'Sullivan, Rekha Rai, Alice Tse, Zhou Songyang, Sandy Chang, Jan Karlseder, Lee Zou. Nature 2011
221
14

Expression and differential regulation of human TERRA at several chromosome ends.
Marianna Feretzaki, Patricia Renck Nunes, Joachim Lingner. RNA 2019
21
19

Paraspeckles: Where Long Noncoding RNA Meets Phase Separation.
Archa H Fox, Shinichi Nakagawa, Tetsuro Hirose, Charles S Bond. Trends Biochem Sci 2018
143
14

Telomeres in ICF syndrome cells are vulnerable to DNA damage due to elevated DNA:RNA hybrids.
Shira Sagie, Shir Toubiana, Stella R Hartono, Hagar Katzir, Aya Tzur-Gilat, Shany Havazelet, Claire Francastel, Guillaume Velasco, Frédéric Chédin, Sara Selig. Nat Commun 2017
52
14

TERRA transcripts are bound by a complex array of RNA-binding proteins.
Isabel López de Silanes, Martina Stagno d'Alcontres, Maria A Blasco. Nat Commun 2010
94
14

Telomeric noncoding RNA TERRA is induced by telomere shortening to nucleate telomerase molecules at short telomeres.
Emilio Cusanelli, Carmina Angelica Perez Romero, Pascal Chartrand. Mol Cell 2013
133
14

Alternative lengthening of telomeres: models, mechanisms and implications.
Anthony J Cesare, Roger R Reddel. Nat Rev Genet 2010
562
14

Specific association of human telomerase activity with immortal cells and cancer.
N W Kim, M A Piatyszek, K R Prowse, C B Harley, M D West, P L Ho, G M Coviello, W E Wright, S L Weinrich, J W Shay. Science 1994
14

Human PSF binds to RAD51 and modulates its homologous-pairing and strand-exchange activities.
Yuichi Morozumi, Yoshimasa Takizawa, Motoki Takaku, Hitoshi Kurumizaka. Nucleic Acids Res 2009
43
14

R-loops induce repressive chromatin marks over mammalian gene terminators.
Konstantina Skourti-Stathaki, Kinga Kamieniarz-Gdula, Nicholas J Proudfoot. Nature 2014
196
10

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
402
10

The Augmented R-Loop Is a Unifying Mechanism for Myelodysplastic Syndromes Induced by High-Risk Splicing Factor Mutations.
Liang Chen, Jia-Yu Chen, Yi-Jou Huang, Ying Gu, Jinsong Qiu, Hao Qian, Changwei Shao, Xuan Zhang, Jing Hu, Hairi Li,[...]. Mol Cell 2018
89
10

The chromatin remodelling factor ATRX suppresses R-loops in transcribed telomeric repeats.
Diu Tt Nguyen, Hsiao Phin J Voon, Barbara Xella, Caroline Scott, David Clynes, Christian Babbs, Helena Ayyub, Jon Kerry, Jacqueline A Sharpe, Jackie A Sloane-Stanley,[...]. EMBO Rep 2017
44
10

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
417
10

Prevalent, Dynamic, and Conserved R-Loop Structures Associate with Specific Epigenomic Signatures in Mammals.
Lionel A Sanz, Stella R Hartono, Yoong Wearn Lim, Sandra Steyaert, Aparna Rajpurkar, Paul A Ginno, Xiaoqin Xu, Frédéric Chédin. Mol Cell 2016
214
10

Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
45
10

Break-induced telomere synthesis underlies alternative telomere maintenance.
Robert L Dilley, Priyanka Verma, Nam Woo Cho, Harrison D Winters, Anne R Wondisford, Roger A Greenberg. Nature 2016
194
10

The non-coding RNA TERRA is a natural ligand and direct inhibitor of human telomerase.
Sophie Redon, Patrick Reichenbach, Joachim Lingner. Nucleic Acids Res 2010
220
10

Transcription-Replication Conflict Orientation Modulates R-Loop Levels and Activates Distinct DNA Damage Responses.
Stephan Hamperl, Michael J Bocek, Joshua C Saldivar, Tomek Swigut, Karlene A Cimprich. Cell 2017
200
10

Loss of ATRX, genome instability, and an altered DNA damage response are hallmarks of the alternative lengthening of telomeres pathway.
Courtney A Lovejoy, Wendi Li, Steven Reisenweber, Supawat Thongthip, Joanne Bruno, Titia de Lange, Saurav De, John H J Petrini, Patricia A Sung, Maria Jasin,[...]. PLoS Genet 2012
342
10

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.
Wei-Ting Lu, Ben R Hawley, George L Skalka, Robert A Baldock, Ewan M Smith, Aldo S Bader, Michal Malewicz, Felicity Z Watts, Ania Wilczynska, Martin Bushell. Nat Commun 2018
89
10

FANCM limits ALT activity by restricting telomeric replication stress induced by deregulated BLM and R-loops.
Bruno Silva, Richard Pentz, Ana Margarida Figueira, Rajika Arora, Yong Woo Lee, Charlotte Hodson, Harry Wischnewski, Andrew J Deans, Claus M Azzalin. Nat Commun 2019
43
10


R Loops and Links to Human Disease.
Patricia Richard, James L Manley. J Mol Biol 2017
67
10

p53 induces formation of NEAT1 lncRNA-containing paraspeckles that modulate replication stress response and chemosensitivity.
Carmen Adriaens, Laura Standaert, Jasmine Barra, Mathilde Latil, Annelien Verfaillie, Peter Kalev, Bram Boeckx, Paul W G Wijnhoven, Enrico Radaelli, William Vermi,[...]. Nat Med 2016
236
10

Involvement of p54(nrb), a PSF partner protein, in DNA double-strand break repair and radioresistance.
Shuyi Li, Wendy W Kuhne, Anita Kulharya, Farlyn Z Hudson, Kyungsoo Ha, Zhen Cao, William S Dynan. Nucleic Acids Res 2009
67
10

The splicing-factor related protein SFPQ/PSF interacts with RAD51D and is necessary for homology-directed repair and sister chromatid cohesion.
Changanamkandath Rajesh, Dustin K Baker, Andrew J Pierce, Douglas L Pittman. Nucleic Acids Res 2011
71
10




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.