A citation-based method for searching scientific literature

Qingfeng Ma, Takanori Tatsuno, Yuka Nakamura, Yasuhito Ishigaki. Biochem Biophys Res Commun 2019
Times Cited: 2







List of co-cited articles
1 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Exon Junction Complex Shapes the Transcriptome by Repressing Recursive Splicing.
Lorea Blazquez, Warren Emmett, Rupert Faraway, Jose Mario Bello Pineda, Simon Bajew, Andre Gohr, Nejc Haberman, Christopher R Sibley, Robert K Bradley, Manuel Irimia,[...]. Mol Cell 2018
29
100




Out-of-frame T cell receptor beta transcripts are eliminated by multiple pathways in vivo.
Grace K Mahowald, Michael A Mahowald, Clara Moon, Bernard Khor, Barry P Sleckman. PLoS One 2011
5
50

Alternative polyadenylation of mRNA precursors.
Bin Tian, James L Manley. Nat Rev Mol Cell Biol 2017
402
50

Wnt signalling in the development of axon, dendrites and synapses.
Chun-Wei He, Chien-Po Liao, Chun-Liang Pan. Open Biol 2018
25
50



Identification and characterization of small molecules that inhibit nonsense-mediated RNA decay and suppress nonsense p53 mutations.
Leenus Martin, Arsen Grigoryan, Ding Wang, Jinhua Wang, Laura Breda, Stefano Rivella, Timothy Cardozo, Lawrence B Gardner. Cancer Res 2014
66
50

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L Salzberg. Genome Biol 2013
50

Evolutionary diversification of the Sm family of RNA-associated proteins.
Douglas G Scofield, Michael Lynch. Mol Biol Evol 2008
27
50

FOXO transcription factors: key regulators of cellular quality control.
Ashley E Webb, Anne Brunet. Trends Biochem Sci 2014
283
50

Upstream ORFs are prevalent translational repressors in vertebrates.
Timothy G Johnstone, Ariel A Bazzini, Antonio J Giraldez. EMBO J 2016
147
50

ICE1 promotes the link between splicing and nonsense-mediated mRNA decay.
Thomas D Baird, Ken Chih-Chien Cheng, Yu-Chi Chen, Eugen Buehler, Scott E Martin, James Inglese, J Robert Hogg. Elife 2018
20
50

Posttranscriptional control of the stem cell and neurogenic programs by the nonsense-mediated RNA decay pathway.
Chih H Lou, Ada Shao, Eleen Y Shum, Josh L Espinoza, Lulu Huang, Rachid Karam, Miles F Wilkinson. Cell Rep 2014
85
50

Software for computing and annotating genomic ranges.
Michael Lawrence, Wolfgang Huber, Hervé Pagès, Patrick Aboyoun, Marc Carlson, Robert Gentleman, Martin T Morgan, Vincent J Carey. PLoS Comput Biol 2013
50


DHX34 and NBAS form part of an autoregulatory NMD circuit that regulates endogenous RNA targets in human cells, zebrafish and Caenorhabditis elegans.
Dasa Longman, Nele Hug, Marianne Keith, Corina Anastasaki, E Elizabeth Patton, Graeme Grimes, Javier F Cáceres. Nucleic Acids Res 2013
57
50

Rbfox-regulated alternative splicing is critical for zebrafish cardiac and skeletal muscle functions.
Thomas L Gallagher, Joshua A Arribere, Paul A Geurts, Cameron R T Exner, Kent L McDonald, Kariena K Dill, Henry L Marr, Shaunak S Adkar, Aaron T Garnett, Sharon L Amacher,[...]. Dev Biol 2011
55
50

ZiFiT (Zinc Finger Targeter): an updated zinc finger engineering tool.
Jeffry D Sander, Morgan L Maeder, Deepak Reyon, Daniel F Voytas, J Keith Joung, Drena Dobbs. Nucleic Acids Res 2010
231
50

FOXO3 signalling links ATM to the p53 apoptotic pathway following DNA damage.
Young Min Chung, See-Hyoung Park, Wen-Bin Tsai, Shih-Ya Wang, Masa-Aki Ikeda, Jonathan S Berek, David J Chen, Mickey C-T Hu. Nat Commun 2012
53
50

Single-Molecule Imaging Uncovers Rules Governing Nonsense-Mediated mRNA Decay.
Tim A Hoek, Deepak Khuperkar, Rik G H Lindeboom, Stijn Sonneveld, Bram M P Verhagen, Sanne Boersma, Michiel Vermeulen, Marvin E Tanenbaum. Mol Cell 2019
41
50

Roles for RNA-binding proteins in development and disease.
Amy E Brinegar, Thomas A Cooper. Brain Res 2016
65
50

Prolonged Mitosis of Neural Progenitors Alters Cell Fate in the Developing Brain.
Louis-Jan Pilaz, John J McMahon, Emily E Miller, Ashley L Lennox, Aussie Suzuki, Edward Salmon, Debra L Silver. Neuron 2016
95
50


Intron size, abundance, and distribution within untranslated regions of genes.
Xin Hong, Douglas G Scofield, Michael Lynch. Mol Biol Evol 2006
109
50

Cloning and Identification of Recombinant Argonaute-Bound Small RNAs Using Next-Generation Sequencing.
Pooja Gangras, Daniel M Dayeh, Justin W Mabin, Kotaro Nakanishi, Guramrit Singh. Methods Mol Biol 2018
4
50


The exon junction complex: a lifelong guardian of mRNA fate.
Lauren A Woodward, Justin W Mabin, Pooja Gangras, Guramrit Singh. Wiley Interdiscip Rev RNA 2017
40
50

An eIF4AIII-containing complex required for mRNA localization and nonsense-mediated mRNA decay.
Isabel M Palacios, David Gatfield, Daniel St Johnston, Elisa Izaurralde. Nature 2004
274
50

Detecting differential usage of exons from RNA-seq data.
Simon Anders, Alejandro Reyes, Wolfgang Huber. Genome Res 2012
725
50

Function and pathological implications of exon junction complex factor Y14.
Tzu-Wei Chuang, Kou-Ming Lee, Woan-Yuh Tarn. Biomolecules 2015
12
50

Disassembly of exon junction complexes by PYM.
Niels H Gehring, Styliani Lamprinaki, Andreas E Kulozik, Matthias W Hentze. Cell 2009
122
50

eIF4AIII binds spliced mRNA in the exon junction complex and is essential for nonsense-mediated decay.
Toshiharu Shibuya, Thomas Ø Tange, Nahum Sonenberg, Melissa J Moore. Nat Struct Mol Biol 2004
201
50

Transcriptome-wide modulation of splicing by the exon junction complex.
Zhen Wang, Valentine Murigneux, Hervé Le Hir. Genome Biol 2014
53
50

Exon Junction Complexes Show a Distributional Bias toward Alternatively Spliced mRNAs and against mRNAs Coding for Ribosomal Proteins.
Christian Hauer, Jana Sieber, Thomas Schwarzl, Ina Hollerer, Tomaz Curk, Anne-Marie Alleaume, Matthias W Hentze, Andreas E Kulozik. Cell Rep 2016
35
50


Nonsense-mediated mRNA decay: novel mechanistic insights and biological impact.
Evangelos D Karousis, Sofia Nasif, Oliver Mühlemann. Wiley Interdiscip Rev RNA 2016
103
50


RNA on the brain: emerging layers of post-transcriptional regulation in cerebral cortex development.
Ashley L Lennox, Hanqian Mao, Debra L Silver. Wiley Interdiscip Rev Dev Biol 2018
26
50

Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.
Søren Lykke-Andersen, Torben Heick Jensen. Nat Rev Mol Cell Biol 2015
362
50

APPRIS: annotation of principal and alternative splice isoforms.
Jose Manuel Rodriguez, Paolo Maietta, Iakes Ezkurdia, Alessandro Pietrelli, Jan-Jaap Wesselink, Gonzalo Lopez, Alfonso Valencia, Michael L Tress. Nucleic Acids Res 2013
109
50

The exon junction complex is required for definition and excision of neighboring introns in Drosophila.
Rippei Hayashi, Dominik Handler, David Ish-Horowicz, Julius Brennecke. Genes Dev 2014
40
50

PSD-95 is post-transcriptionally repressed during early neural development by PTBP1 and PTBP2.
Sika Zheng, Erin E Gray, Geetanjali Chawla, Bo Torben Porse, Thomas J O'Dell, Douglas L Black. Nat Neurosci 2012
131
50

Haploinsufficiency for Core Exon Junction Complex Components Disrupts Embryonic Neurogenesis and Causes p53-Mediated Microcephaly.
Hanqian Mao, John J McMahon, Yi-Hsuan Tsai, Zefeng Wang, Debra L Silver. PLoS Genet 2016
47
50


Introns in UTRs: why we should stop ignoring them.
Alicia A Bicknell, Can Cenik, Hon N Chua, Frederick P Roth, Melissa J Moore. Bioessays 2012
74
50

Smg6/Est1 licenses embryonic stem cell differentiation via nonsense-mediated mRNA decay.
Tangliang Li, Yue Shi, Pei Wang, Luis Miguel Guachalla, Baofa Sun, Tjard Joerss, Yu-Sheng Chen, Marco Groth, Anja Krueger, Matthias Platzer,[...]. EMBO J 2015
61
50

Regulation of transactivation-independent proapoptotic activity of p53 by FOXO3a.
Han You, Kazuo Yamamoto, Tak Wah Mak. Proc Natl Acad Sci U S A 2006
108
50


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.