A citation-based method for searching scientific literature

Brian Gregory, Nusrat Rahman, Ananth Bommakanti, Md Shamsuzzaman, Mamata Thapa, Alana Lescure, Janice M Zengel, Lasse Lindahl. Life Sci Alliance 2019
Times Cited: 15







List of co-cited articles
54 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ribosome assembly coming into focus.
Sebastian Klinge, John L Woolford. Nat Rev Mol Cell Biol 2019
202
40

Structure of the human 80S ribosome.
Heena Khatter, Alexander G Myasnikov, S Kundhavai Natchiar, Bruno P Klaholz. Nature 2015
271
33

A new system for naming ribosomal proteins.
Nenad Ban, Roland Beckmann, Jamie H D Cate, Jonathan D Dinman, François Dragon, Steven R Ellis, Denis L J Lafontaine, Lasse Lindahl, Anders Liljas, Jeffrey M Lipton,[...]. Curr Opin Struct Biol 2014
365
26

Eukaryotic Ribosome Assembly.
Jochen Baßler, Ed Hurt. Annu Rev Biochem 2019
154
26


Ribosome Levels Selectively Regulate Translation and Lineage Commitment in Human Hematopoiesis.
Rajiv K Khajuria, Mathias Munschauer, Jacob C Ulirsch, Claudia Fiorini, Leif S Ludwig, Sean K McFarland, Nour J Abdulhay, Harrison Specht, Hasmik Keshishian, D R Mani,[...]. Cell 2018
182
26

Disruption of ribosome assembly in yeast blocks cotranscriptional pre-rRNA processing and affects the global hierarchy of ribosome biogenesis.
Jason Talkish, Stephanie Biedka, Jelena Jakovljevic, Jingyu Zhang, Lan Tang, John R Strahler, Philip C Andrews, Janine R Maddock, John L Woolford. RNA 2016
30
20

Kinetic analysis demonstrates a requirement for the Rat1 exonuclease in cotranscriptional pre-rRNA cleavage.
Konstantin Axt, Sarah L French, Ann L Beyer, David Tollervey. PLoS One 2014
19
20

The extended loops of ribosomal proteins uL4 and uL22 of Escherichia coli contribute to ribosome assembly and protein translation.
Marlon G Lawrence, Md Shamsuzzaman, Maithri Kondopaka, Clarence Pascual, Janice M Zengel, Lasse Lindahl. Nucleic Acids Res 2016
16
20

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.
Jesus de la Cruz, Katrin Karbstein, John L Woolford. Annu Rev Biochem 2015
207
20

The structure of the eukaryotic ribosome at 3.0 Å resolution.
Adam Ben-Shem, Nicolas Garreau de Loubresse, Sergey Melnikov, Lasse Jenner, Gulnara Yusupova, Marat Yusupov. Science 2011
774
20

Structures of the human and Drosophila 80S ribosome.
Andreas M Anger, Jean-Paul Armache, Otto Berninghausen, Michael Habeck, Marion Subklewe, Daniel N Wilson, Roland Beckmann. Nature 2013
353
20

Balanced production of ribosome components is required for proper G1/S transition in Saccharomyces cerevisiae.
Fernando Gómez-Herreros, Olga Rodríguez-Galán, Macarena Morillo-Huesca, Douglas Maya, María Arista-Romero, Jesús de la Cruz, Sebastián Chávez, Mari Cruz Muñoz-Centeno. J Biol Chem 2013
31
20

Eukaryotic ribosome assembly, transport and quality control.
Cohue Peña, Ed Hurt, Vikram Govind Panse. Nat Struct Mol Biol 2017
130
20

The role of human ribosomal proteins in the maturation of rRNA and ribosome production.
Sara Robledo, Rachel A Idol, Dan L Crimmins, Jack H Ladenson, Philip J Mason, Monica Bessler. RNA 2008
169
20

Knockdown of the Ribosomal Protein eL29 in Mammalian Cells Leads to Significant Changes in Gene Expression at the Transcription Level.
Alexander V Gopanenko, Alena V Kolobova, Maria I Meschaninova, Alya G Venyaminova, Alexey E Tupikin, Marsel R Kabilov, Alexey A Malygin, Galina G Karpova. Cells 2020
7
42

Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast.
Liman Zhang, Chen Wu, Gaihong Cai, She Chen, Keqiong Ye. Genes Dev 2016
81
13


Ribosome biogenesis in the yeast Saccharomyces cerevisiae.
John L Woolford, Susan J Baserga. Genetics 2013
479
13

Pre-18S ribosomal RNA is structurally compacted into the SSU processome prior to being cleaved from nascent transcripts in Saccharomyces cerevisiae.
Yvonne N Osheim, Sarah L French, Kristin M Keck, Erica A Champion, Krasimir Spasov, François Dragon, Susan J Baserga, Ann L Beyer. Mol Cell 2004
208
13

Ribosome deficiency protects against ER stress in Saccharomyces cerevisiae.
Kristan K Steffen, Mark A McCormick, Kim M Pham, Vivian L MacKay, Joe R Delaney, Christopher J Murakami, Matt Kaeberlein, Brian K Kennedy. Genetics 2012
121
13

Structural snapshots of actively translating human ribosomes.
Elmar Behrmann, Justus Loerke, Tatyana V Budkevich, Kaori Yamamoto, Andrea Schmidt, Pawel A Penczek, Matthijn R Vos, Jörg Bürger, Thorsten Mielke, Patrick Scheerer,[...]. Cell 2015
110
13

A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.
Bethany S Strunk, Megan N Novak, Crystal L Young, Katrin Karbstein. Cell 2012
188
13

Nucleolar stress with and without p53.
Allison James, Yubo Wang, Himanshu Raje, Raphyel Rosby, Patrick DiMario. Nucleus 2014
172
13

Ribosomopathies: human disorders of ribosome dysfunction.
Anupama Narla, Benjamin L Ebert. Blood 2010
525
13


Maturation of pre-40S particles in yeast and humans.
Emilie Cerezo, Célia Plisson-Chastang, Anthony K Henras, Simon Lebaron, Pierre-Emmanuel Gleizes, Marie-Françoise O'Donohue, Yves Romeo, Yves Henry. Wiley Interdiscip Rev RNA 2019
30
13

Ribosomal proteins produced in excess are degraded by the ubiquitin-proteasome system.
Min-Kyung Sung, Justin M Reitsma, Michael J Sweredoski, Sonja Hess, Raymond J Deshaies. Mol Biol Cell 2016
68
13


Analysis of nucleolar protein dynamics reveals the nuclear degradation of ribosomal proteins.
Yun Wah Lam, Angus I Lamond, Matthias Mann, Jens S Andersen. Curr Biol 2007
260
13

RpS3 translation is repressed by interaction with its own mRNA.
Hag Dong Kim, Tae-Sung Kim, Yoo Jin Joo, Hyun-Seock Shin, Sang-Hwa Kim, Chang-Young Jang, Cheol Eui Lee, Joon Kim. J Cell Biochem 2010
22
13


Human ribosomal protein S13 regulates expression of its own gene at the splicing step by a feedback mechanism.
Alexey A Malygin, Natalia M Parakhnevitch, Anton V Ivanov, Ian C Eperon, Galina G Karpova. Nucleic Acids Res 2007
53
13

Human ribosomal protein S26 suppresses the splicing of its pre-mRNA.
Anton V Ivanov, Alexey A Malygin, Galina G Karpova. Biochim Biophys Acta 2005
26
13

Cancer-mutated ribosome protein L22 (RPL22/eL22) suppresses cancer cell survival by blocking p53-MDM2 circuit.
Bo Cao, Ziling Fang, Peng Liao, Xiang Zhou, Jianping Xiong, Shelya Zeng, Hua Lu. Oncotarget 2017
25
13

RP-MDM2-p53 Pathway: Linking Ribosomal Biogenesis and Tumor Surveillance.
Yong Liu, Chad Deisenroth, Yanping Zhang. Trends Cancer 2016
47
13

Functional dichotomy of ribosomal proteins during the synthesis of mammalian 40S ribosomal subunits.
Marie-Françoise O'Donohue, Valérie Choesmel, Marlène Faubladier, Gwennaële Fichant, Pierre-Emmanuel Gleizes. J Cell Biol 2010
139
13

clusterProfiler: an R package for comparing biological themes among gene clusters.
Guangchuang Yu, Li-Gen Wang, Yanyan Han, Qing-Yu He. OMICS 2012
13

Ribosomal protein L5 and L11 mutations are associated with cleft palate and abnormal thumbs in Diamond-Blackfan anemia patients.
Hanna T Gazda, Mee Rie Sheen, Adrianna Vlachos, Valerie Choesmel, Marie-Françoise O'Donohue, Hal Schneider, Natasha Darras, Catherine Hasman, Colin A Sieff, Peter E Newburger,[...]. Am J Hum Genet 2008
300
13

Small and Large Ribosomal Subunit Deficiencies Lead to Distinct Gene Expression Signatures that Reflect Cellular Growth Rate.
Ze Cheng, Christopher Frederick Mugler, Abdurrahman Keskin, Stefanie Hodapp, Leon Yen-Lee Chan, Karsten Weis, Philipp Mertins, Aviv Regev, Marko Jovanovic, Gloria Ann Brar. Mol Cell 2019
53
13

Accurate proteome-wide label-free quantification by delayed normalization and maximal peptide ratio extraction, termed MaxLFQ.
Jürgen Cox, Marco Y Hein, Christian A Luber, Igor Paron, Nagarjuna Nagaraj, Matthias Mann. Mol Cell Proteomics 2014
13


Loss of ribosomal protein L11 affects zebrafish embryonic development through a p53-dependent apoptotic response.
Anirban Chakraborty, Tamayo Uechi, Sayomi Higa, Hidetsugu Torihara, Naoya Kenmochi. PLoS One 2009
105
13

The economics of ribosome biosynthesis in yeast.
J R Warner. Trends Biochem Sci 1999
13



Partial Loss of Rpl11 in Adult Mice Recapitulates Diamond-Blackfan Anemia and Promotes Lymphomagenesis.
Lucia Morgado-Palacin, Gianluca Varetti, Susana Llanos, Gonzalo Gómez-López, Dolores Martinez, Manuel Serrano. Cell Rep 2015
50
13

Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Lukas Kater, Matthias Thoms, Clara Barrio-Garcia, Jingdong Cheng, Sherif Ismail, Yasar Luqman Ahmed, Gert Bange, Dieter Kressler, Otto Berninghausen, Irmgard Sinning,[...]. Cell 2017
96
13

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
13

ViennaRNA Package 2.0.
Ronny Lorenz, Stephan H Bernhart, Christian Höner Zu Siederdissen, Hakim Tafer, Christoph Flamm, Peter F Stadler, Ivo L Hofacker. Algorithms Mol Biol 2011
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.