A citation-based method for searching scientific literature

Vincent Boivin, Laurence Faucher-Giguère, Michelle Scott, Sherif Abou-Elela. Wiley Interdiscip Rev RNA 2019
Times Cited: 12







List of co-cited articles
119 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes.
Vincent Boivin, Gabrielle Deschamps-Francoeur, Sonia Couture, Ryan M Nottingham, Philia Bouchard-Bourelle, Alan M Lambowitz, Michelle S Scott, Sherif Abou-Elela. RNA 2018
28
58

The emerging landscape of small nucleolar RNAs in cell biology.
Fabien Dupuis-Sandoval, Mikaël Poirier, Michelle S Scott. Wiley Interdiscip Rev RNA 2015
126
50

Eukaryotic snoRNAs: a paradigm for gene expression flexibility.
Giorgio Dieci, Milena Preti, Barbara Montanini. Genomics 2009
179
50



snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs.
Laurent Lestrade, Michel J Weber. Nucleic Acids Res 2006
345
41


Protein coding genes as hosts for noncoding RNA expression.
Vincent Boivin, Gabrielle Deschamps-Francoeur, Michelle S Scott. Semin Cell Dev Biol 2018
30
41

Identification of discrete classes of small nucleolar RNA featuring different ends and RNA binding protein dependency.
Gabrielle Deschamps-Francoeur, Daniel Garneau, Fabien Dupuis-Sandoval, Audrey Roy, Marie Frappier, Mathieu Catala, Sonia Couture, Mélissa Barbe-Marcoux, Sherif Abou-Elela, Michelle S Scott. Nucleic Acids Res 2014
24
41

Small RNAs derived from snoRNAs.
Ryan J Taft, Evgeny A Glazov, Timo Lassmann, Yoshihide Hayashizaki, Piero Carninci, John S Mattick. RNA 2009
300
33

C/D-box snoRNAs form methylating and non-methylating ribonucleoprotein complexes: Old dogs show new tricks.
Marina Falaleeva, Justin R Welden, Marilyn J Duncan, Stefan Stamm. Bioessays 2017
48
33

An updated human snoRNAome.
Hadi Jorjani, Stephanie Kehr, Dominik J Jedlinski, Rafal Gumienny, Jana Hertel, Peter F Stadler, Mihaela Zavolan, Andreas R Gruber. Nucleic Acids Res 2016
123
33

Dual function of C/D box small nucleolar RNAs in rRNA modification and alternative pre-mRNA splicing.
Marina Falaleeva, Amadis Pages, Zaneta Matuszek, Sana Hidmi, Lily Agranat-Tamir, Konstantin Korotkov, Yuval Nevo, Eduardo Eyras, Ruth Sperling, Stefan Stamm. Proc Natl Acad Sci U S A 2016
93
33

A snoRNA modulates mRNA 3' end processing and regulates the expression of a subset of mRNAs.
Chunliu Huang, Junjie Shi, Yibin Guo, Weijun Huang, Shanshan Huang, Siqi Ming, Xingui Wu, Rui Zhang, Junjun Ding, Wei Zhao,[...]. Nucleic Acids Res 2017
38
33

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
33

RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase.
Ryan M Nottingham, Douglas C Wu, Yidan Qin, Jun Yao, Scott Hunicke-Smith, Alan M Lambowitz. RNA 2016
43
33

U6 snRNA Pseudogenes: Markers of Retrotransposition Dynamics in Mammals.
Aurélien J Doucet, Gaëtan Droc, Oliver Siol, Jérôme Audoux, Nicolas Gilbert. Mol Biol Evol 2015
22
25

The expanding snoRNA world.
Jean Pierre Bachellerie, Jérôme Cavaillé, Alexander Hüttenhofer. Biochimie 2002
455
25

Identification of brain-specific and imprinted small nucleolar RNA genes exhibiting an unusual genomic organization.
J Cavaillé, K Buiting, M Kiefmann, M Lalande, C I Brannan, B Horsthemke, J P Bachellerie, J Brosius, A Hüttenhofer. Proc Natl Acad Sci U S A 2000
422
25

Lives that introns lead after splicing.
Jay R Hesselberth. Wiley Interdiscip Rev RNA 2013
41
25

snOPY: a small nucleolar RNA orthological gene database.
Maki Yoshihama, Akihiro Nakao, Naoya Kenmochi. BMC Res Notes 2013
51
25


Insights into snoRNA biogenesis and processing from PAR-CLIP of snoRNA core proteins and small RNA sequencing.
Shivendra Kishore, Andreas R Gruber, Dominik J Jedlinski, Afzal P Syed, Hadi Jorjani, Mihaela Zavolan. Genome Biol 2013
76
25



Defining the RNA polymerase III transcriptome: Genome-wide localization of the RNA polymerase III transcription machinery in human cells.
Donatella Canella, Viviane Praz, Jaime H Reina, Pascal Cousin, Nouria Hernandez. Genome Res 2010
120
25

Reference sequence (RefSeq) database at NCBI: current status, taxonomic expansion, and functional annotation.
Nuala A O'Leary, Mathew W Wright, J Rodney Brister, Stacy Ciufo, Diana Haddad, Rich McVeigh, Bhanu Rajput, Barbara Robbertse, Brian Smith-White, Danso Ako-Adjei,[...]. Nucleic Acids Res 2016
25

CoCo: RNA-seq read assignment correction for nested genes and multimapped reads.
Gabrielle Deschamps-Francoeur, Vincent Boivin, Sherif Abou Elela, Michelle S Scott. Bioinformatics 2019
10
30

A SnoRNA-derived piRNA interacts with human interleukin-4 pre-mRNA and induces its decay in nuclear exosomes.
Fudi Zhong, Nan Zhou, Kang Wu, Yubiao Guo, Weiping Tan, Hong Zhang, Xue Zhang, Guannan Geng, Ting Pan, Haihua Luo,[...]. Nucleic Acids Res 2015
58
25


Specialized box C/D snoRNPs act as antisense guides to target RNA base acetylation.
Sunny Sharma, Jun Yang, Rob van Nues, Peter Watzinger, Peter Kötter, Denis L J Lafontaine, Sander Granneman, Karl-Dieter Entian. PLoS Genet 2017
44
25

Functional diversity of small nucleolar RNAs.
Tomaž Bratkovič, Janja Božič, Boris Rogelj. Nucleic Acids Res 2020
43
25

Site-specific ribose methylation of preribosomal RNA: a novel function for small nucleolar RNAs.
Z Kiss-László, Y Henry, J P Bachellerie, M Caizergues-Ferrer, T Kiss. Cell 1996
612
25

RNA modification in Cajal bodies.
U Thomas Meier. RNA Biol 2017
40
25

Retroposed SNOfall--a mammalian-wide comparison of platypus snoRNAs.
Jürgen Schmitz, Anja Zemann, Gennady Churakov, Heiner Kuhl, Frank Grützner, Richard Reinhardt, Jürgen Brosius. Genome Res 2008
47
25



A human snoRNA with microRNA-like functions.
Christine Ender, Azra Krek, Marc R Friedländer, Michaela Beitzinger, Lasse Weinmann, Wei Chen, Sébastien Pfeffer, Nikolaus Rajewsky, Gunter Meister. Mol Cell 2008
549
25

Noncoding RNAs in eukaryotic ribosome biogenesis and function.
Denis L J Lafontaine. Nat Struct Mol Biol 2015
145
25

An Evaluation of Function of Multicopy Noncoding RNAs in Mammals Using ENCODE/FANTOM Data and Comparative Genomics.
Marc P Hoeppner, Elena Denisenko, Paul P Gardner, Sebastian Schmeier, Anthony M Poole. Mol Biol Evol 2018
4
50

The snoRNA MBII-52 (SNORD 115) is processed into smaller RNAs and regulates alternative splicing.
Shivendra Kishore, Amit Khanna, Zhaiyi Zhang, Jingyi Hui, Piotr J Balwierz, Mihaela Stefan, Carol Beach, Robert D Nicholls, Mihaela Zavolan, Stefan Stamm. Hum Mol Genet 2010
190
16

Implication of snoRNA U50 in human breast cancer.
Xue-Yuan Dong, Peng Guo, Jeff Boyd, Xiaodong Sun, Qunna Li, Wei Zhou, Jin-Tang Dong. J Genet Genomics 2009
139
16


Human box C/D snoRNA processing conservation across multiple cell types.
Michelle S Scott, Motoharu Ono, Kayo Yamada, Akinori Endo, Geoffrey J Barton, Angus I Lamond. Nucleic Acids Res 2012
55
16

Processing of the precursors to small nucleolar RNAs and rRNAs requires common components.
E Petfalski, T Dandekar, Y Henry, D Tollervey. Mol Cell Biol 1998
168
16

Differentially expressed, variant U1 snRNAs regulate gene expression in human cells.
Dawn O'Reilly, Martin Dienstbier, Sally A Cowley, Pilar Vazquez, Marek Drozdz, Stephen Taylor, William S James, Shona Murphy. Genome Res 2013
51
16

Characterizing Expression and Processing of Precursor and Mature Human tRNAs by Hydro-tRNAseq and PAR-CLIP.
Tasos Gogakos, Miguel Brown, Aitor Garzia, Cindy Meyer, Markus Hafner, Thomas Tuschl. Cell Rep 2017
83
16

Developmental analysis of spliceosomal snRNA isoform expression.
Zhipeng Lu, A Gregory Matera. G3 (Bethesda) 2014
12
16

Evolution of vault RNAs.
Peter F Stadler, Julian J-L Chen, Jörg Hackermüller, Steve Hoffmann, Friedemann Horn, Phillip Khaitovich, Antje K Kretzschmar, Axel Mosig, Sonja J Prohaska, Xiaodong Qi,[...]. Mol Biol Evol 2009
96
16

C/D-box snoRNA-derived RNA production is associated with malignant transformation and metastatic progression in prostate cancer.
Elena S Martens-Uzunova, Youri Hoogstrate, Anton Kalsbeek, Bas Pigmans, Mirella Vredenbregt-van den Berg, Natasja Dits, Søren Jensby Nielsen, Adam Baker, Tapio Visakorpi, Chris Bangma,[...]. Oncotarget 2015
46
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.