A citation-based method for searching scientific literature


List of co-cited articles
70 articles co-cited >1



Times Cited
  Times     Co-cited
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Mechanisms of change in gene copy number.
P J Hastings, James R Lupski, Susan M Rosenberg, Grzegorz Ira. Nat Rev Genet 2009
731
38

An integrated map of structural variation in 2,504 human genomes.
Peter H Sudmant, Tobias Rausch, Eugene J Gardner, Robert E Handsaker, Alexej Abyzov, John Huddleston, Yan Zhang, Kai Ye, Goo Jun, Markus Hsi-Yang Fritz,[...]. Nature 2015
999
38

Multi-platform discovery of haplotype-resolved structural variation in human genomes.
Mark J P Chaisson, Ashley D Sanders, Xuefang Zhao, Ankit Malhotra, David Porubsky, Tobias Rausch, Eugene J Gardner, Oscar L Rodriguez, Li Guo, Ryan L Collins,[...]. Nat Commun 2019
247
30

Hotspots for copy number variation in chimpanzees and humans.
George H Perry, Joelle Tchinda, Sean D McGrath, Junjun Zhang, Simon R Picker, Angela M Cáceres, A John Iafrate, Chris Tyler-Smith, Stephen W Scherer, Evan E Eichler,[...]. Proc Natl Acad Sci U S A 2006
166
30


Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.
Omer Gokcumen, Paul L Babb, Rebecca C Iskow, Qihui Zhu, Xinghua Shi, Ryan E Mills, Iuliana Ionita-Laza, Eric J Vallender, Andrew G Clark, Welkin E Johnson,[...]. Genome Biol 2011
38
23

Global variation in copy number in the human genome.
Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, T Daniel Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen,[...]. Nature 2006
23

Origins and functional impact of copy number variation in the human genome.
Donald F Conrad, Dalila Pinto, Richard Redon, Lars Feuk, Omer Gokcumen, Yujun Zhang, Jan Aerts, T Daniel Andrews, Chris Barnes, Peter Campbell,[...]. Nature 2010
23

A high-coverage genome sequence from an archaic Denisovan individual.
Matthias Meyer, Martin Kircher, Marie-Theres Gansauge, Heng Li, Fernando Racimo, Swapan Mallick, Joshua G Schraiber, Flora Jay, Kay Prüfer, Cesare de Filippo,[...]. Science 2012
851
23

Altitude adaptation in Tibetans caused by introgression of Denisovan-like DNA.
Emilia Huerta-Sánchez, Xin Jin, Asan, Zhuoma Bianba, Benjamin M Peter, Nicolas Vinckenbosch, Yu Liang, Xin Yi, Mingze He, Mehmet Somel,[...]. Nature 2014
427
23

The complete genome sequence of a Neanderthal from the Altai Mountains.
Kay Prüfer, Fernando Racimo, Nick Patterson, Flora Jay, Sriram Sankararaman, Susanna Sawyer, Anja Heinze, Gabriel Renaud, Peter H Sudmant, Cesare de Filippo,[...]. Nature 2014
882
23

A global reference for human genetic variation.
Adam Auton, Lisa D Brooks, Richard M Durbin, Erik P Garrison, Hyun Min Kang, Jan O Korbel, Jonathan L Marchini, Shane McCarthy, Gil A McVean, Gonçalo R Abecasis. Nature 2015
23

DELLY: structural variant discovery by integrated paired-end and split-read analysis.
Tobias Rausch, Thomas Zichner, Andreas Schlattl, Adrian M Stütz, Vladimir Benes, Jan O Korbel. Bioinformatics 2012
861
23

Major Impacts of Widespread Structural Variation on Gene Expression and Crop Improvement in Tomato.
Michael Alonge, Xingang Wang, Matthias Benoit, Sebastian Soyk, Lara Pereira, Lei Zhang, Hamsini Suresh, Srividya Ramakrishnan, Florian Maumus, Danielle Ciren,[...]. Cell 2020
108
23

Structural variation in the 3D genome.
Malte Spielmann, Darío G Lupiáñez, Stefan Mundlos. Nat Rev Genet 2018
194
23

Adaptive evolution of UGT2B17 copy-number variation.
Yali Xue, Donglin Sun, Allan Daly, Fengtang Yang, Xue Zhou, Mengyao Zhao, Ni Huang, Tatiana Zerjal, Charles Lee, Nigel P Carter,[...]. Am J Hum Genet 2008
99
15

Bias of selection on human copy-number variants.
Duc-Quang Nguyen, Caleb Webber, Chris P Ponting. PLoS Genet 2006
193
15

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
950
15

Discovery and genotyping of structural variation from long-read haploid genome sequence data.
John Huddleston, Mark J P Chaisson, Karyn Meltz Steinberg, Wes Warren, Kendra Hoekzema, David Gordon, Tina A Graves-Lindsay, Katherine M Munson, Zev N Kronenberg, Laura Vives,[...]. Genome Res 2017
159
15

Genomics of disease risk in globally diverse populations.
Deepti Gurdasani, Inês Barroso, Eleftheria Zeggini, Manjinder S Sandhu. Nat Rev Genet 2019
77
15




Extensive copy-number variation of the human olfactory receptor gene family.
Janet M Young, Raelynn M Endicott, Sean S Parghi, Megan Walker, Jeffrey M Kidd, Barbara J Trask. Am J Hum Genet 2008
95
15

Primate genome architecture influences structural variation mechanisms and functional consequences.
Omer Gokcumen, Verena Tischler, Jelena Tica, Qihui Zhu, Rebecca C Iskow, Eunjung Lee, Markus Hsi-Yang Fritz, Amy Langdon, Adrian M Stütz, Pavlos Pavlidis,[...]. Proc Natl Acad Sci U S A 2013
39
15

10 Years of GWAS Discovery: Biology, Function, and Translation.
Peter M Visscher, Naomi R Wray, Qian Zhang, Pamela Sklar, Mark I McCarthy, Matthew A Brown, Jian Yang. Am J Hum Genet 2017
15

Independent amylase gene copy number bursts correlate with dietary preferences in mammals.
Petar Pajic, Pavlos Pavlidis, Kirsten Dean, Lubov Neznanova, Rose-Anne Romano, Danielle Garneau, Erin Daugherity, Anja Globig, Stefan Ruhl, Omer Gokcumen. Elife 2019
29
15

The evolution and functional impact of human deletion variants shared with archaic hominin genomes.
Yen-Lung Lin, Pavlos Pavlidis, Emre Karakoc, Jerry Ajay, Omer Gokcumen. Mol Biol Evol 2015
21
15

Global diversity, population stratification, and selection of human copy-number variation.
Peter H Sudmant, Swapan Mallick, Bradley J Nelson, Fereydoun Hormozdiari, Niklas Krumm, John Huddleston, Bradley P Coe, Carl Baker, Susanne Nordenfelt, Michael Bamshad,[...]. Science 2015
181
15

Recent segmental duplications in the human genome.
Jeffrey A Bailey, Zhiping Gu, Royden A Clark, Knut Reinert, Rhea V Samonte, Stuart Schwartz, Mark D Adams, Eugene W Myers, Peter W Li, Evan E Eichler. Science 2002
935
15

Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
494
15

Mapping copy number variation by population-scale genome sequencing.
Ryan E Mills, Klaudia Walter, Chip Stewart, Robert E Handsaker, Ken Chen, Can Alkan, Alexej Abyzov, Seungtai Chris Yoon, Kai Ye, R Keira Cheetham,[...]. Nature 2011
714
15

Diet and the evolution of human amylase gene copy number variation.
George H Perry, Nathaniel J Dominy, Katrina G Claw, Arthur S Lee, Heike Fiegler, Richard Redon, John Werner, Fernando A Villanea, Joanna L Mountain, Rajeev Misra,[...]. Nat Genet 2007
736
15



Evolution of the rapidly mutating human salivary agglutinin gene (DMBT1) and population subsistence strategy.
Shamik Polley, Sandra Louzada, Diego Forni, Manuela Sironi, Theodosius Balaskas, David S Hains, Fengtang Yang, Edward J Hollox. Proc Natl Acad Sci U S A 2015
22
15

Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation.
Duo Xu, Pavlos Pavlidis, Recep Ozgur Taskent, Nikolaos Alachiotis, Colin Flanagan, Michael DeGiorgio, Ran Blekhman, Stefan Ruhl, Omer Gokcumen. Mol Biol Evol 2017
28
15

Analysis of copy number variants and segmental duplications in the human genome: Evidence for a change in the process of formation in recent evolutionary history.
Philip M Kim, Hugo Y K Lam, Alexander E Urban, Jan O Korbel, Jason Affourtit, Fabian Grubert, Xueying Chen, Sherman Weissman, Michael Snyder, Mark B Gerstein. Genome Res 2008
101
15

Analysis of Human Sequence Data Reveals Two Pulses of Archaic Denisovan Admixture.
Sharon R Browning, Brian L Browning, Ying Zhou, Serena Tucci, Joshua M Akey. Cell 2018
103
15

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations.
Swapan Mallick, Heng Li, Mark Lipson, Iain Mathieson, Melissa Gymrek, Fernando Racimo, Mengyao Zhao, Niru Chennagiri, Susanne Nordenfelt, Arti Tandon,[...]. Nature 2016
517
15

The phenotypic legacy of admixture between modern humans and Neandertals.
Corinne N Simonti, Benjamin Vernot, Lisa Bastarache, Erwin Bottinger, David S Carrell, Rex L Chisholm, David R Crosslin, Scott J Hebbring, Gail P Jarvik, Iftikhar J Kullo,[...]. Science 2016
121
15

Piercing the dark matter: bioinformatics of long-range sequencing and mapping.
Fritz J Sedlazeck, Hayan Lee, Charlotte A Darby, Michael C Schatz. Nat Rev Genet 2018
172
15

Excavating Neandertal and Denisovan DNA from the genomes of Melanesian individuals.
Benjamin Vernot, Serena Tucci, Janet Kelso, Joshua G Schraiber, Aaron B Wolf, Rachel M Gittelman, Michael Dannemann, Steffi Grote, Rajiv C McCoy, Heather Norton,[...]. Science 2016
167
15

A high-coverage Neandertal genome from Vindija Cave in Croatia.
Kay Prüfer, Cesare de Filippo, Steffi Grote, Fabrizio Mafessoni, Petra Korlević, Mateja Hajdinjak, Benjamin Vernot, Laurits Skov, Pinghsun Hsieh, Stéphane Peyrégne,[...]. Science 2017
201
15

High-resolution comparative analysis of great ape genomes.
Zev N Kronenberg, Ian T Fiddes, David Gordon, Shwetha Murali, Stuart Cantsilieris, Olivia S Meyerson, Jason G Underwood, Bradley J Nelson, Mark J P Chaisson, Max L Dougherty,[...]. Science 2018
141
15

Insights into human genetic variation and population history from 929 diverse genomes.
Anders Bergström, Shane A McCarthy, Ruoyun Hui, Mohamed A Almarri, Qasim Ayub, Petr Danecek, Yuan Chen, Sabine Felkel, Pille Hallast, Jack Kamm,[...]. Science 2020
107
15

A map of human genome variation from population-scale sequencing.
Gonçalo R Abecasis, David Altshuler, Adam Auton, Lisa D Brooks, Richard M Durbin, Richard A Gibbs, Matt E Hurles, Gil A McVean. Nature 2010
15

Transient structural variations have strong effects on quantitative traits and reproductive isolation in fission yeast.
Daniel C Jeffares, Clemency Jolly, Mimoza Hoti, Doug Speed, Liam Shaw, Charalampos Rallis, Francois Balloux, Christophe Dessimoz, Jürg Bähler, Fritz J Sedlazeck. Nat Commun 2017
134
15

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
15

The impact of structural variation on human gene expression.
Colby Chiang, Alexandra J Scott, Joe R Davis, Emily K Tsang, Xin Li, Yungil Kim, Tarik Hadzic, Farhan N Damani, Liron Ganel, Stephen B Montgomery,[...]. Nat Genet 2017
125
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.