A citation-based method for searching scientific literature

Maaike Vancamelbeke, Thessa Laeremans, Wiebe Vanhove, Kaline Arnauts, Anabela Santo Ramalho, Ricard Farré, Isabelle Cleynen, Marc Ferrante, Séverine Vermeire. J Crohns Colitis 2019
Times Cited: 40







List of co-cited articles
337 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Short Chain Fatty Acids (SCFAs)-Mediated Gut Epithelial and Immune Regulation and Its Relevance for Inflammatory Bowel Diseases.
Daniela Parada Venegas, Marjorie K De la Fuente, Glauben Landskron, María Julieta González, Rodrigo Quera, Gerard Dijkstra, Hermie J M Harmsen, Klaas Nico Faber, Marcela A Hermoso. Front Immunol 2019
27

Alterations in the epithelial stem cell compartment could contribute to permanent changes in the mucosa of patients with ulcerative colitis.
Isabella Dotti, Rut Mora-Buch, Elena Ferrer-Picón, Núria Planell, Peter Jung, M Carme Masamunt, Raquel Franco Leal, Javier Martín de Carpi, Josep Llach, Ingrid Ordás,[...]. Gut 2017
112
22

A decrease of the butyrate-producing species Roseburia hominis and Faecalibacterium prausnitzii defines dysbiosis in patients with ulcerative colitis.
Kathleen Machiels, Marie Joossens, João Sabino, Vicky De Preter, Ingrid Arijs, Venessa Eeckhaut, Vera Ballet, Karolien Claes, Filip Van Immerseel, Kristin Verbeke,[...]. Gut 2014
936
22

The Colonic Crypt Protects Stem Cells from Microbiota-Derived Metabolites.
Gerard E Kaiko, Stacy H Ryu, Olivia I Koues, Patrick L Collins, Lilianna Solnica-Krezel, Edward J Pearce, Erika L Pearce, Eugene M Oltz, Thaddeus S Stappenbeck. Cell 2016
320
17

Intestinal Inflammation Modulates the Epithelial Response to Butyrate in Patients With Inflammatory Bowel Disease.
Elena Ferrer-Picón, Isabella Dotti, Ana M Corraliza, Aida Mayorgas, Miriam Esteller, José Carlos Perales, Elena Ricart, Maria C Masamunt, Anna Carrasco, Eva Tristán,[...]. Inflamm Bowel Dis 2020
54
17

Short chain fatty acids in human large intestine, portal, hepatic and venous blood.
J H Cummings, E W Pomare, W J Branch, C P Naylor, G T Macfarlane. Gut 1987
17

Microbial-Derived Butyrate Promotes Epithelial Barrier Function through IL-10 Receptor-Dependent Repression of Claudin-2.
Leon Zheng, Caleb J Kelly, Kayla D Battista, Rachel Schaefer, Jordi M Lanis, Erica E Alexeev, Ruth X Wang, Joseph C Onyiah, Douglas J Kominsky, Sean P Colgan. J Immunol 2017
212
15

Rapid and noninvasive metabonomic characterization of inflammatory bowel disease.
Julian R Marchesi, Elaine Holmes, Fatima Khan, Sunil Kochhar, Pauline Scanlan, Fergus Shanahan, Ian D Wilson, Yulan Wang. J Proteome Res 2007
399
15

Metabolites produced by commensal bacteria promote peripheral regulatory T-cell generation.
Nicholas Arpaia, Clarissa Campbell, Xiying Fan, Stanislav Dikiy, Joris van der Veeken, Paul deRoos, Hui Liu, Justin R Cross, Klaus Pfeffer, Paul J Coffer,[...]. Nature 2013
15


Gut microbiota-derived metabolites as key actors in inflammatory bowel disease.
Aonghus Lavelle, Harry Sokol. Nat Rev Gastroenterol Hepatol 2020
457
15

Microbiota fermentation-NLRP3 axis shapes the impact of dietary fibres on intestinal inflammation.
Vishal Singh, Beng San Yeoh, Rachel E Walker, Xia Xiao, Piu Saha, Rachel M Golonka, Jingwei Cai, Alexis Charles Andre Bretin, Xi Cheng, Qing Liu,[...]. Gut 2019
95
12

Commensal microbe-derived butyrate induces the differentiation of colonic regulatory T cells.
Yukihiro Furusawa, Yuuki Obata, Shinji Fukuda, Takaho A Endo, Gaku Nakato, Daisuke Takahashi, Yumiko Nakanishi, Chikako Uetake, Keiko Kato, Tamotsu Kato,[...]. Nature 2013
12

The impact of the level of the intestinal short chain Fatty acids in inflammatory bowel disease patients versus healthy subjects.
N Huda-Faujan, A S Abdulamir, A B Fatimah, O Muhammad Anas, M Shuhaimi, A M Yazid, Y Y Loong. Open Biochem J 2010
191
12

Metabonomics of human fecal extracts characterize ulcerative colitis, Crohn's disease and healthy individuals.
Jacob Tveiten Bjerrum, Yulan Wang, Fuhua Hao, Mehmet Coskun, Christian Ludwig, Ulrich Günther, Ole Haagen Nielsen. Metabolomics 2015
140
12

Treatment of left-sided ulcerative colitis with butyrate enemas: a controlled trial.
A H Steinhart, T Hiruki, A Brzezinski, J P Baker. Aliment Pharmacol Ther 1996
148
12

Combined oral sodium butyrate and mesalazine treatment compared to oral mesalazine alone in ulcerative colitis: randomized, double-blind, placebo-controlled pilot study.
P Vernia, G Monteleone, G Grandinetti, G Villotti, E Di Giulio, G Frieri, A Marcheggiano, F Pallone, R Caprilli, A Torsoli. Dig Dis Sci 2000
81
12

Effects of butyrate on intestinal barrier function in a Caco-2 cell monolayer model of intestinal barrier.
Luying Peng, Zhenjuan He, Wei Chen, Ian R Holzman, Jing Lin. Pediatr Res 2007
279
12

Long-term expansion of epithelial organoids from human colon, adenoma, adenocarcinoma, and Barrett's epithelium.
Toshiro Sato, Daniel E Stange, Marc Ferrante, Robert G J Vries, Johan H Van Es, Stieneke Van den Brink, Winan J Van Houdt, Apollo Pronk, Joost Van Gorp, Peter D Siersema,[...]. Gastroenterology 2011
12

Activation of Gpr109a, receptor for niacin and the commensal metabolite butyrate, suppresses colonic inflammation and carcinogenesis.
Nagendra Singh, Ashish Gurav, Sathish Sivaprakasam, Evan Brady, Ravi Padia, Huidong Shi, Muthusamy Thangaraju, Puttur D Prasad, Santhakumar Manicassamy, David H Munn,[...]. Immunity 2014
12


Crosstalk between Microbiota-Derived Short-Chain Fatty Acids and Intestinal Epithelial HIF Augments Tissue Barrier Function.
Caleb J Kelly, Leon Zheng, Eric L Campbell, Bejan Saeedi, Carsten C Scholz, Amanda J Bayless, Kelly E Wilson, Louise E Glover, Douglas J Kominsky, Aaron Magnuson,[...]. Cell Host Microbe 2015
772
12

Ex Vivo Mimicking of Inflammation in Organoids Derived From Patients With Ulcerative Colitis.
Kaline Arnauts, Bram Verstockt, Anabela Santo Ramalho, Séverine Vermeire, Catherine Verfaillie, Marc Ferrante. Gastroenterology 2020
22
22

Development of an enhanced human gastrointestinal epithelial culture system to facilitate patient-based assays.
Kelli L VanDussen, Jeffrey M Marinshaw, Nurmohammad Shaikh, Hiroyuki Miyoshi, Clara Moon, Phillip I Tarr, Matthew A Ciorba, Thaddeus S Stappenbeck. Gut 2015
307
12

Review article: the role of butyrate on colonic function.
H M Hamer, D Jonkers, K Venema, S Vanhoutvin, F J Troost, R-J Brummer. Aliment Pharmacol Ther 2008
10

Oral butyrate for mildly to moderately active Crohn's disease.
A Di Sabatino, R Morera, R Ciccocioppo, P Cazzola, S Gotti, F P Tinozzi, S Tinozzi, G R Corazza. Aliment Pharmacol Ther 2005
145
10

Butyrate inhibits inflammatory responses through NFkappaB inhibition: implications for Crohn's disease.
J P Segain, D Raingeard de la Blétière, A Bourreille, V Leray, N Gervois, C Rosales, L Ferrier, C Bonnet, H M Blottière, J P Galmiche. Gut 2000
805
10

Impaired butyrate oxidation in ulcerative colitis is due to decreased butyrate uptake and a defect in the oxidation pathway.
Vicky De Preter, Ingrid Arijs, Karen Windey, Wiebe Vanhove, Severine Vermeire, Frans Schuit, Paul Rutgeerts, Kristin Verbeke. Inflamm Bowel Dis 2012
70
10

GPR43 mediates microbiota metabolite SCFA regulation of antimicrobial peptide expression in intestinal epithelial cells via activation of mTOR and STAT3.
Ye Zhao, Feidi Chen, Wei Wu, Mingming Sun, Anthony J Bilotta, Suxia Yao, Yi Xiao, Xiangsheng Huang, Tonyia D Eaves-Pyles, George Golovko,[...]. Mucosal Immunol 2018
198
10

Topical butyrate improves efficacy of 5-ASA in refractory distal ulcerative colitis: results of a multicentre trial.
P Vernia, V Annese, G Bresci, G d'Albasio, R D'Incà, S Giaccari, M Ingrosso, C Mansi, G Riegler, D Valpiani,[...]. Eur J Clin Invest 2003
138
10

Effect of Fecal Microbiota Transplantation on 8-Week Remission in Patients With Ulcerative Colitis: A Randomized Clinical Trial.
Samuel P Costello, Patrick A Hughes, Oliver Waters, Robert V Bryant, Andrew D Vincent, Paul Blatchford, Rosa Katsikeros, Jesica Makanyanga, Melissa A Campaniello, Chris Mavrangelos,[...]. JAMA 2019
365
10

Bacteria penetrate the normally impenetrable inner colon mucus layer in both murine colitis models and patients with ulcerative colitis.
Malin E V Johansson, Jenny K Gustafsson, Jessica Holmén-Larsson, Karolina S Jabbar, Lijun Xia, Hua Xu, Fayez K Ghishan, Frederic A Carvalho, Andrew T Gewirtz, Henrik Sjövall,[...]. Gut 2014
544
10

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
10

DNA methylation defines regional identity of human intestinal epithelial organoids and undergoes dynamic changes during development.
Judith Kraiczy, Komal M Nayak, Kate J Howell, Alexander Ross, Jessica Forbester, Camilla Salvestrini, Roxana Mustata, Sally Perkins, Amanda Andersson-Rolf, Esther Leenen,[...]. Gut 2019
83
10

The microbial metabolites, short-chain fatty acids, regulate colonic Treg cell homeostasis.
Patrick M Smith, Michael R Howitt, Nicolai Panikov, Monia Michaud, Carey Ann Gallini, Mohammad Bohlooly-Y, Jonathan N Glickman, Wendy S Garrett. Science 2013
10

Tryptophan catabolites from microbiota engage aryl hydrocarbon receptor and balance mucosal reactivity via interleukin-22.
Teresa Zelante, Rossana G Iannitti, Cristina Cunha, Antonella De Luca, Gloria Giovannini, Giuseppe Pieraccini, Riccardo Zecchi, Carmen D'Angelo, Cristina Massi-Benedetti, Francesca Fallarino,[...]. Immunity 2013
10

The role of short-chain fatty acids in the interplay between diet, gut microbiota, and host energy metabolism.
Gijs den Besten, Karen van Eunen, Albert K Groen, Koen Venema, Dirk-Jan Reijngoud, Barbara M Bakker. J Lipid Res 2013
10

Gut microbiome structure and metabolic activity in inflammatory bowel disease.
Eric A Franzosa, Alexandra Sirota-Madi, Julian Avila-Pacheco, Nadine Fornelos, Henry J Haiser, Stefan Reinker, Tommi Vatanen, A Brantley Hall, Himel Mallick, Lauren J McIver,[...]. Nat Microbiol 2019
603
10

From Dietary Fiber to Host Physiology: Short-Chain Fatty Acids as Key Bacterial Metabolites.
Ara Koh, Filipe De Vadder, Petia Kovatcheva-Datchary, Fredrik Bäckhed. Cell 2016
10

Connecting dysbiosis, bile-acid dysmetabolism and gut inflammation in inflammatory bowel diseases.
Henri Duboc, Sylvie Rajca, Dominique Rainteau, David Benarous, Marie-Anne Maubert, Elodie Quervain, Ginette Thomas, Véronique Barbu, Lydie Humbert, Guillaume Despras,[...]. Gut 2013
465
10

Fecal Microbiota Transplantation Induces Remission in Patients With Active Ulcerative Colitis in a Randomized Controlled Trial.
Paul Moayyedi, Michael G Surette, Peter T Kim, Josie Libertucci, Melanie Wolfe, Catherine Onischi, David Armstrong, John K Marshall, Zain Kassam, Walter Reinisch,[...]. Gastroenterology 2015
848
10

Microbiota changes induced by microencapsulated sodium butyrate in patients with inflammatory bowel disease.
Sonia Facchin, Nicola Vitulo, Matteo Calgaro, Andrea Buda, Chiara Romualdi, Daniel Pohl, Barbara Perini, Greta Lorenzon, Carla Marinelli, Renata D'Incà,[...]. Neurogastroenterol Motil 2020
32
12


Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients.
Harry Sokol, Bénédicte Pigneur, Laurie Watterlot, Omar Lakhdari, Luis G Bermúdez-Humarán, Jean-Jacques Gratadoux, Sébastien Blugeon, Chantal Bridonneau, Jean-Pierre Furet, Gérard Corthier,[...]. Proc Natl Acad Sci U S A 2008
10

Multi-omics of the gut microbial ecosystem in inflammatory bowel diseases.
Jason Lloyd-Price, Cesar Arze, Ashwin N Ananthakrishnan, Melanie Schirmer, Julian Avila-Pacheco, Tiffany W Poon, Elizabeth Andrews, Nadim J Ajami, Kevin S Bonham, Colin J Brislawn,[...]. Nature 2019
919
10


The luminal short-chain fatty acid butyrate modulates NF-kappaB activity in a human colonic epithelial cell line.
M S Inan, R J Rasoulpour, L Yin, A K Hubbard, D W Rosenberg, C Giardina. Gastroenterology 2000
313
7

Gut microbiota and IBD: causation or correlation?
Josephine Ni, Gary D Wu, Lindsey Albenberg, Vesselin T Tomov. Nat Rev Gastroenterol Hepatol 2017
688
7

The microbiome and butyrate regulate energy metabolism and autophagy in the mammalian colon.
Dallas R Donohoe, Nikhil Garge, Xinxin Zhang, Wei Sun, Thomas M O'Connell, Maureen K Bunger, Scott J Bultman. Cell Metab 2011
966
7

Butyrate-producing bacteria supplemented in vitro to Crohn's disease patient microbiota increased butyrate production and enhanced intestinal epithelial barrier integrity.
Annelies Geirnaert, Marta Calatayud, Charlotte Grootaert, Debby Laukens, Sarah Devriese, Guy Smagghe, Martine De Vos, Nico Boon, Tom Van de Wiele. Sci Rep 2017
207
7


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.