A citation-based method for searching scientific literature

Bénédicte Duriez, Sabarinadh Chilaka, Jean-François Bercher, Eslande Hercul, Marie-Noëlle Prioleau. Nucleic Acids Res 2019
Times Cited: 8







List of co-cited articles
34 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.
Tyrone Ryba, Ichiro Hiratani, Junjie Lu, Mari Itoh, Michael Kulik, Jinfeng Zhang, Thomas C Schulz, Allan J Robins, Stephen Dalton, David M Gilbert. Genome Res 2010
385
50

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.
Rossana Foti, Stefano Gnan, Daniela Cornacchia, Vishnu Dileep, Aydan Bulut-Karslioglu, Sarah Diehl, Andreas Buness, Felix A Klein, Wolfgang Huber, Ewan Johnstone,[...]. Mol Cell 2016
106
50

A new class of disordered elements controls DNA replication through initiator self-assembly.
Matthew W Parker, Maren Bell, Mustafa Mir, Jonchee A Kao, Xavier Darzacq, Michael R Botchan, James M Berger. Elife 2019
45
37

DNA replication origins-where do we begin?
Marie-Noëlle Prioleau, David M MacAlpine. Genes Dev 2016
96
37

Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells.
Daniela Cornacchia, Vishnu Dileep, Jean-Pierre Quivy, Rossana Foti, Federico Tili, Rachel Santarella-Mellwig, Claude Antony, Geneviève Almouzni, David M Gilbert, Sara B C Buonomo. EMBO J 2012
163
37

Rif1 regulates the replication timing domains on the human genome.
Satoshi Yamazaki, Aii Ishii, Yutaka Kanoh, Masako Oda, Yasumasa Nishito, Hisao Masai. EMBO J 2012
164
37

Cell-type-specific replication initiation programs set fragility of the FRA3B fragile site.
Anne Letessier, Gaël A Millot, Stéphane Koundrioukoff, Anne-Marie Lachagès, Nicolas Vogt, R Scott Hansen, Bernard Malfoy, Olivier Brison, Michelle Debatisse. Nature 2011
297
37

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.
Emilie Besnard, Amélie Babled, Laure Lapasset, Ollivier Milhavet, Hugues Parrinello, Christelle Dantec, Jean-Michel Marin, Jean-Marc Lemaitre. Nat Struct Mol Biol 2012
254
37

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.
Franck Picard, Jean-Charles Cadoret, Benjamin Audit, Alain Arneodo, Adriana Alberti, Christophe Battail, Laurent Duret, Marie-Noelle Prioleau. PLoS Genet 2014
85
37

Genome-wide stability of the DNA replication program in single mammalian cells.
Saori Takahashi, Hisashi Miura, Takahiro Shibata, Koji Nagao, Katsuzumi Okumura, Masato Ogata, Chikashi Obuse, Shin-Ichiro Takebayashi, Ichiro Hiratani. Nat Genet 2019
34
37

Global reorganization of replication domains during embryonic stem cell differentiation.
Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Tomoki Yokochi, Michaela Schwaiger, Chia-Wei Chang, Yung Lyou, Tim M Townes, Dirk Schübeler, David M Gilbert. PLoS Biol 2008
391
37

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
25

Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
Jiao Sima, Abhijit Chakraborty, Vishnu Dileep, Marco Michalski, Kyle N Klein, Nicolas P Holcomb, Jesse L Turner, Michelle T Paulsen, Juan Carlos Rivera-Mulia, Claudia Trevilla-Garcia,[...]. Cell 2019
79
25

Replication timing and epigenome remodelling are associated with the nature of chromosomal rearrangements in cancer.
Qian Du, Saul A Bert, Nicola J Armstrong, C Elizabeth Caldon, Jenny Z Song, Shalima S Nair, Cathryn M Gould, Phuc-Loi Luu, Timothy Peters, Amanda Khoury,[...]. Nat Commun 2019
34
25

Clustering of strong replicators associated with active promoters is sufficient to establish an early-replicating domain.
Caroline Brossas, Anne-Laure Valton, Sergey V Venev, Sabarinadh Chilaka, Antonin Counillon, Marc Laurent, Coralie Goncalves, Bénédicte Duriez, Franck Picard, Job Dekker,[...]. EMBO J 2020
3
66

New insights into replication origin characteristics in metazoans.
Christelle Cayrou, Philippe Coulombe, Aurore Puy, Stephanie Rialle, Noam Kaplan, Eran Segal, Marcel Méchali. Cell Cycle 2012
119
25

G4 motifs affect origin positioning and efficiency in two vertebrate replicators.
Anne-Laure Valton, Vahideh Hassan-Zadeh, Ingrid Lema, Nicole Boggetto, Patrizia Alberti, Carole Saintomé, Jean-Francois Riou, Marie-Noëlle Prioleau. EMBO J 2014
119
25

The chromatin environment shapes DNA replication origin organization and defines origin classes.
Christelle Cayrou, Benoit Ballester, Isabelle Peiffer, Romain Fenouil, Philippe Coulombe, Jean-Christophe Andrau, Jacques van Helden, Marcel Méchali. Genome Res 2015
94
25

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex.
Shin-Ichiro Hiraga, Gina M Alvino, Fujung Chang, Hui-Yong Lian, Akila Sridhar, Takashi Kubota, Bonita J Brewer, Michael Weinreich, M K Raghuraman, Anne D Donaldson. Genes Dev 2014
144
25

The Protective Role of Dormant Origins in Response to Replicative Stress.
Lilas Courtot, Jean-Sébastien Hoffmann, Valérie Bergoglio. Int J Mol Sci 2018
18
25

Heritable gene silencing in lymphocytes delays chromatid resolution without affecting the timing of DNA replication.
Véronique Azuara, Karen E Brown, Ruth R E Williams, Natasha Webb, Niall Dillon, Richard Festenstein, Veronica Buckle, Matthias Merkenschlager, Amanda G Fisher. Nat Cell Biol 2003
86
25

Genome-wide dynamics of replication timing revealed by in vitro models of mouse embryogenesis.
Ichiro Hiratani, Tyrone Ryba, Mari Itoh, Joy Rathjen, Michael Kulik, Bernadett Papp, Eden Fussner, David P Bazett-Jones, Kathrin Plath, Stephen Dalton,[...]. Genome Res 2010
222
25

Capturing the dynamics of genome replication on individual ultra-long nanopore sequence reads.
Carolin A Müller, Michael A Boemo, Paolo Spingardi, Benedikt M Kessler, Skirmantas Kriaucionis, Jared T Simpson, Conrad A Nieduszynski. Nat Methods 2019
39
25

Predictable dynamic program of timing of DNA replication in human cells.
Romain Desprat, Danielle Thierry-Mieg, Nathalie Lailler, Julien Lajugie, Carl Schildkraut, Jean Thierry-Mieg, Eric E Bouhassira. Genome Res 2009
93
25

FORK-seq: replication landscape of the Saccharomyces cerevisiae genome by nanopore sequencing.
Magali Hennion, Jean-Michel Arbona, Laurent Lacroix, Corinne Cruaud, Bertrand Theulot, Benoît Le Tallec, Florence Proux, Xia Wu, Elizaveta Novikova, Stefan Engelen,[...]. Genome Biol 2020
16
25


Genome-scale analysis of replication timing: from bench to bioinformatics.
Tyrone Ryba, Dana Battaglia, Benjamin D Pope, Ichiro Hiratani, David M Gilbert. Nat Protoc 2011
72
25


DNA replication timing alterations identify common markers between distinct progeroid diseases.
Juan Carlos Rivera-Mulia, Romain Desprat, Claudia Trevilla-Garcia, Daniela Cornacchia, Hélène Schwerer, Takayo Sasaki, Jiao Sima, Tyler Fells, Lorenz Studer, Jean-Marc Lemaitre,[...]. Proc Natl Acad Sci U S A 2017
20
25

Mechanisms of Oncogene-Induced Replication Stress: Jigsaw Falling into Place.
Panagiotis Kotsantis, Eva Petermann, Simon J Boulton. Cancer Discov 2018
155
25

Local rewiring of genome-nuclear lamina interactions by transcription.
Laura Brueckner, Peiyao A Zhao, Tom van Schaik, Christ Leemans, Jiao Sima, Daniel Peric-Hupkes, David M Gilbert, Bas van Steensel. EMBO J 2020
22
25

Dynamic changes in replication timing and gene expression during lineage specification of human pluripotent stem cells.
Juan Carlos Rivera-Mulia, Quinton Buckley, Takayo Sasaki, Jared Zimmerman, Ruth A Didier, Kristopher Nazor, Jeanne F Loring, Zheng Lian, Sherman Weissman, Allan J Robins,[...]. Genome Res 2015
87
25

Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication.
Arkaitz Ibarra, Etienne Schwob, Juan Méndez. Proc Natl Acad Sci U S A 2008
318
25

Mitotic remodeling of the replicon and chromosome structure.
Jean-Marc Lemaitre, Etienne Danis, Philippe Pasero, Yegor Vassetzky, Marcel Méchali. Cell 2005
144
25

Who's In and Who's Out-Compositional Control of Biomolecular Condensates.
Jonathon A Ditlev, Lindsay B Case, Michael K Rosen. J Mol Biol 2018
131
12

NOPdb: Nucleolar Proteome Database--2008 update.
Yasmeen Ahmad, François-Michel Boisvert, Peter Gregor, Andy Cobley, Angus I Lamond. Nucleic Acids Res 2009
192
12

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.
Christelle Cayrou, Philippe Coulombe, Alice Vigneron, Slavica Stanojcic, Olivier Ganier, Isabelle Peiffer, Eric Rivals, Aurore Puy, Sabine Laurent-Chabalier, Romain Desprat,[...]. Genome Res 2011
220
12

Mechanisms for initiating cellular DNA replication.
Franziska Bleichert, Michael R Botchan, James M Berger. Science 2017
108
12

Protein Phase Separation: A New Phase in Cell Biology.
Steven Boeynaems, Simon Alberti, Nicolas L Fawzi, Tanja Mittag, Magdalini Polymenidou, Frederic Rousseau, Joost Schymkowitz, James Shorter, Benjamin Wolozin, Ludo Van Den Bosch,[...]. Trends Cell Biol 2018
784
12


Chromosome Duplication in Saccharomyces cerevisiae.
Stephen P Bell, Karim Labib. Genetics 2016
190
12

Lattice light-sheet microscopy: imaging molecules to embryos at high spatiotemporal resolution.
Bi-Chang Chen, Wesley R Legant, Kai Wang, Lin Shao, Daniel E Milkie, Michael W Davidson, Chris Janetopoulos, Xufeng S Wu, John A Hammer, Zhe Liu,[...]. Science 2014
899
12

CRISPR-dCas9 and sgRNA scaffolds enable dual-colour live imaging of satellite sequences and repeat-enriched individual loci.
Yi Fu, Pedro P Rocha, Vincent M Luo, Ramya Raviram, Yan Deng, Esteban O Mazzoni, Jane A Skok. Nat Commun 2016
73
12


Xist recruits the X chromosome to the nuclear lamina to enable chromosome-wide silencing.
Chun-Kan Chen, Mario Blanco, Constanza Jackson, Erik Aznauryan, Noah Ollikainen, Christine Surka, Amy Chow, Andrea Cerase, Patrick McDonel, Mitchell Guttman. Science 2016
163
12

CTCF and cohesin regulate chromatin loop stability with distinct dynamics.
Anders S Hansen, Iryna Pustova, Claudia Cattoglio, Robert Tjian, Xavier Darzacq. Elife 2017
259
12

Translation factor mRNA granules direct protein synthetic capacity to regions of polarized growth.
Mariavittoria Pizzinga, Christian Bates, Jennifer Lui, Gabriella Forte, Fabián Morales-Polanco, Emma Linney, Barbora Knotkova, Beverley Wilson, Clara A Solari, Luke E Berchowitz,[...]. J Cell Biol 2019
22
12

CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci.
Ipek Tasan, Gabriela Sustackova, Liguo Zhang, Jiah Kim, Mayandi Sivaguru, Mohammad HamediRad, Yuchuan Wang, Justin Genova, Jian Ma, Andrew S Belmont,[...]. Nucleic Acids Res 2018
28
12

Multi-Color Single-Molecule Imaging Uncovers Extensive Heterogeneity in mRNA Decoding.
Sanne Boersma, Deepak Khuperkar, Bram M P Verhagen, Stijn Sonneveld, Jonathan B Grimm, Luke D Lavis, Marvin E Tanenbaum. Cell 2019
59
12

A high-resolution map of the three-dimensional chromatin interactome in human cells.
Fulai Jin, Yan Li, Jesse R Dixon, Siddarth Selvaraj, Zhen Ye, Ah Young Lee, Chia-An Yen, Anthony D Schmitt, Celso A Espinoza, Bing Ren. Nature 2013
751
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.