A citation-based method for searching scientific literature

Arda Halu, Shikang Liu, Seung Han Baek, Brian D Hobbs, Gary M Hunninghake, Michael H Cho, Edwin K Silverman, Amitabh Sharma. Hum Mol Genet 2019
Times Cited: 4







List of co-cited articles
20 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


A disease module in the interactome explains disease heterogeneity, drug response and captures novel pathways and genes in asthma.
Amitabh Sharma, Jörg Menche, C Chris Huang, Tatiana Ort, Xiaobo Zhou, Maksim Kitsak, Nidhi Sahni, Derek Thibault, Linh Voung, Feng Guo,[...]. Hum Mol Genet 2015
89
75

NEDD9 targets COL3A1 to promote endothelial fibrosis and pulmonary arterial hypertension.
Andriy O Samokhin, Thomas Stephens, Bradley M Wertheim, Rui-Sheng Wang, Sara O Vargas, Lai-Ming Yung, Minwei Cao, Marcel Brown, Elena Arons, Paul B Dieffenbach,[...]. Sci Transl Med 2018
43
75

Network medicine--from obesity to the "diseasome".
Albert-László Barabási. N Engl J Med 2007
288
50

Disease networks. Uncovering disease-disease relationships through the incomplete interactome.
Jörg Menche, Amitabh Sharma, Maksim Kitsak, Susan Dina Ghiassian, Marc Vidal, Joseph Loscalzo, Albert-László Barabási. Science 2015
564
50

On the performance of de novo pathway enrichment.
Richa Batra, Nicolas Alcaraz, Kevin Gitzhofer, Josch Pauling, Henrik J Ditzel, Marc Hellmuth, Jan Baumbach, Markus List. NPJ Syst Biol Appl 2017
24
50

Strengths and Opportunities of Network Medicine in Cardiovascular Diseases.
Giuditta Benincasa, Raffaele Marfella, Nunzia Della Mura, Concetta Schiano, Claudio Napoli. Circ J 2020
21
50

From single drug targets to synergistic network pharmacology in ischemic stroke.
Ana I Casas, Ahmed A Hassan, Simon J Larsen, Vanessa Gomez-Rangel, Mahmoud Elbatreek, Pamela W M Kleikers, Emre Guney, Javier Egea, Manuela G López, Jan Baumbach,[...]. Proc Natl Acad Sci U S A 2019
37
50

Controllability in an islet specific regulatory network identifies the transcriptional factor NFATC4, which regulates Type 2 Diabetes associated genes.
Amitabh Sharma, Arda Halu, Julius L Decano, Megha Padi, Yang-Yu Liu, Rashmi B Prasad, Joao Fadista, Marc Santolini, Jörg Menche, Scott T Weiss,[...]. NPJ Syst Biol Appl 2018
13
50

Epigenetic Inheritance Underlying Pulmonary Arterial Hypertension.
Claudio Napoli, Giuditta Benincasa, Joseph Loscalzo. Arterioscler Thromb Vasc Biol 2019
30
50

KeyPathwayMinerWeb: online multi-omics network enrichment.
Markus List, Nicolas Alcaraz, Martin Dissing-Hansen, Henrik J Ditzel, Jan Mollenhauer, Jan Baumbach. Nucleic Acids Res 2016
24
50

Network Medicine: A Clinical Approach for Precision Medicine and Personalized Therapy in Coronary Heart Disease.
Teresa Infante, Luca Del Viscovo, Maria Luisa De Rimini, Sergio Padula, Pio Caso, Claudio Napoli. J Atheroscler Thromb 2020
12
50

Primary prevention of atherosclerosis: a clinical challenge for the reversal of epigenetic mechanisms?
Claudio Napoli, Valeria Crudele, Andrea Soricelli, Mohammed Al-Omran, Nicoletta Vitale, Teresa Infante, Francesco P Mancini. Circulation 2012
75
50



Network-based approach to prediction and population-based validation of in silico drug repurposing.
Feixiong Cheng, Rishi J Desai, Diane E Handy, Ruisheng Wang, Sebastian Schneeweiss, Albert-László Barabási, Joseph Loscalzo. Nat Commun 2018
140
50


Network Medicine in Pathobiology.
Laurel Yong-Hwa Lee, Joseph Loscalzo. Am J Pathol 2019
24
50

De novo pathway-based biomarker identification.
Nicolas Alcaraz, Markus List, Richa Batra, Fabio Vandin, Henrik J Ditzel, Jan Baumbach. Nucleic Acids Res 2017
27
50

Molecular networks in Network Medicine: Development and applications.
Edwin K Silverman, Harald H H W Schmidt, Eleni Anastasiadou, Lucia Altucci, Marco Angelini, Lina Badimon, Jean-Luc Balligand, Giuditta Benincasa, Giovambattista Capasso, Federica Conte,[...]. Wiley Interdiscip Rev Syst Biol Med 2020
42
50

Emergence of scaling in random networks
Barabasi, Albert. Science 1999
50

Remodelling the extracellular matrix in development and disease.
Caroline Bonnans, Jonathan Chou, Zena Werb. Nat Rev Mol Cell Biol 2014
25

Recent approaches to the prioritization of candidate disease genes.
Nadezhda T Doncheva, Tim Kacprowski, Mario Albrecht. Wiley Interdiscip Rev Syst Biol Med 2012
43
25


Clinical genetic testing using a custom-designed steroid-resistant nephrotic syndrome gene panel: analysis and recommendations.
Ethan S Sen, Philip Dean, Laura Yarram-Smith, Agnieszka Bierzynska, Geoff Woodward, Chris Buxton, Gemma Dennis, Gavin I Welsh, Maggie Williams, Moin A Saleem. J Med Genet 2017
25
25

TIGRESS: Trustful Inference of Gene REgulation using Stability Selection.
Anne-Claire Haury, Fantine Mordelet, Paola Vera-Licona, Jean-Philippe Vert. BMC Syst Biol 2012
149
25

Interpretable Decision Sets: A Joint Framework for Description and Prediction.
Himabindu Lakkaraju, Stephen H Bach, Leskovec Jure. KDD 2016
21
25

Big Data Analytics in Medicine and Healthcare.
Blagoj Ristevski, Ming Chen. J Integr Bioinform 2018
36
25

ProteoLens: a visual analytic tool for multi-scale database-driven biological network data mining.
Tianxiao Huan, Andrey Y Sivachenko, Scott H Harrison, Jake Y Chen. BMC Bioinformatics 2008
19
25

Biology of obesity: lessons from animal models of obesity.
Keizo Kanasaki, Daisuke Koya. J Biomed Biotechnol 2011
81
25



Ten simple rules to create biological network figures for communication.
G Elisabeta Marai, Bruno Pinaud, Katja Bühler, Alexander Lex, John H Morris. PLoS Comput Biol 2019
8
25

Scoring Bayesian Networks of Mixed Variables.
Bryan Andrews, Joseph Ramsey, Gregory F Cooper. Int J Data Sci Anal 2018
7
25

The NIH Roadmap Epigenomics Mapping Consortium.
Bradley E Bernstein, John A Stamatoyannopoulos, Joseph F Costello, Bing Ren, Aleksandar Milosavljevic, Alexander Meissner, Manolis Kellis, Marco A Marra, Arthur L Beaudet, Joseph R Ecker,[...]. Nat Biotechnol 2010
25

Next-Generation Machine Learning for Biological Networks.
Diogo M Camacho, Katherine M Collins, Rani K Powers, James C Costello, James J Collins. Cell 2018
211
25

A meta-analytic approach to genes that are associated with impaired and elevated spatial memory performance.
Claudia De Sanctis, Gian Carlo Bellenchi, Davide Viggiano. Psychiatry Res 2018
5
25

The multilayered complexity of ceRNA crosstalk and competition.
Yvonne Tay, John Rinn, Pier Paolo Pandolfi. Nature 2014
25

The significance of negative correlations in brain connectivity.
Liang Zhan, Lisanne M Jenkins, Ouri E Wolfson, Johnson Jonaris GadElkarim, Kevin Nocito, Paul M Thompson, Olusola A Ajilore, Moo K Chung, Alex D Leow. J Comp Neurol 2017
16
25

Visible Machine Learning for Biomedicine.
Michael K Yu, Jianzhu Ma, Jasmin Fisher, Jason F Kreisberg, Benjamin J Raphael, Trey Ideker. Cell 2018
42
25

Advances to Bayesian network inference for generating causal networks from observational biological data.
Jing Yu, V Anne Smith, Paul P Wang, Alexander J Hartemink, Erich D Jarvis. Bioinformatics 2004
270
25

Development of a primary human Small Intestine-on-a-Chip using biopsy-derived organoids.
Magdalena Kasendra, Alessio Tovaglieri, Alexandra Sontheimer-Phelps, Sasan Jalili-Firoozinezhad, Amir Bein, Angeliki Chalkiadaki, William Scholl, Cheng Zhang, Hannah Rickner, Camilla A Richmond,[...]. Sci Rep 2018
211
25

Gene regulatory network inference: data integration in dynamic models-a review.
Michael Hecker, Sandro Lambeck, Susanne Toepfer, Eugene van Someren, Reinhard Guthke. Biosystems 2009
327
25


Spliced segments at the 5' terminus of adenovirus 2 late mRNA.
S M Berget, C Moore, P A Sharp. Proc Natl Acad Sci U S A 1977
870
25

SysBioMed report: advancing systems biology for medical applications.
O Wolkenhauer, D Fell, P De Meyts, N Blüthgen, H Herzel, N Le Novère, T Höfer, K Schürrle, I van Leeuwen. IET Syst Biol 2009
16
25

The 21-nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans.
B J Reinhart, F J Slack, M Basson, A E Pasquinelli, J C Bettinger, A E Rougvie, H R Horvitz, G Ruvkun. Nature 2000
25

The human genome browser at UCSC.
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, David Haussler. Genome Res 2002
25

Hierarchical organization of modularity in metabolic networks.
E Ravasz, A L Somera, D A Mongru, Z N Oltvai, A L Barabási. Science 2002
25

Adjusting batch effects in microarray expression data using empirical Bayes methods.
W Evan Johnson, Cheng Li, Ariel Rabinovic. Biostatistics 2007
25

Using Bayesian networks to analyze expression data.
N Friedman, M Linial, I Nachman, D Pe'er. J Comput Biol 2000
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.