A citation-based method for searching scientific literature

Onkar B Sawant, Vijay K Jidigam, Rebecca D Fuller, Olivia F Zucaro, Cristel Kpegba, Minzhong Yu, Neal S Peachey, Sujata Rao. FASEB J 2019
Times Cited: 10







List of co-cited articles
82 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Removal of clock gene Bmal1 from the retina affects retinal development and accelerates cone photoreceptor degeneration during aging.
Kenkichi Baba, Ilaria Piano, Polina Lyuboslavsky, Micah A Chrenek, Jana T Sellers, Shuo Zhang, Claudia Gargini, Li He, Gianluca Tosini, P Michael Iuvone. Proc Natl Acad Sci U S A 2018
21
50

Circadian organization of the mammalian retina: from gene regulation to physiology and diseases.
Douglas G McMahon, P Michael Iuvone, Gianluca Tosini. Prog Retin Eye Res 2014
102
40

Intrinsic circadian clock of the mammalian retina: importance for retinal processing of visual information.
Kai-Florian Storch, Carlos Paz, James Signorovitch, Elio Raviola, Basil Pawlyk, Tiansen Li, Charles J Weitz. Cell 2007
269
40

Altered ocular parameters from circadian clock gene disruptions.
Richard A Stone, Alice M McGlinn, Ranjay Chakraborty, Duk Cheon Lee, Victoria Yang, Ayman Elmasri, Erica Landis, James Shaffer, P Michael Iuvone, Xiangzhong Zheng,[...]. PLoS One 2019
15
40

The Circadian Clock Gene Bmal1 Controls Thyroid Hormone-Mediated Spectral Identity and Cone Photoreceptor Function.
Onkar B Sawant, Amanda M Horton, Olivia F Zucaro, Ricky Chan, Vera L Bonilha, Ivy S Samuels, Sujata Rao. Cell Rep 2017
24
40

Mice lacking Period 1 and Period 2 circadian clock genes exhibit blue cone photoreceptor defects.
Ouafa Ait-Hmyed, Marie-Paule Felder-Schmittbuhl, Marina Garcia-Garrido, Susanne Beck, Christina Seide, Vithiyanjali Sothilingam, Naoyuki Tanimoto, Mathias Seeliger, Mohammed Bennis, David Hicks. Eur J Neurosci 2013
23
30

Ocular Clocks: Adapting Mechanisms for Eye Functions and Health.
Marie-Paule Felder-Schmittbuhl, Ethan D Buhr, Ouria Dkhissi-Benyahya, David Hicks, Stuart N Peirson, Christophe P Ribelayga, Cristina Sandu, Rainer Spessert, Gianluca Tosini. Invest Ophthalmol Vis Sci 2018
27
30

The Retinal Circadian Clock and Photoreceptor Viability.
Kenkichi Baba, Christophe P Ribelayga, P Michael Iuvone, Gianluca Tosini. Adv Exp Med Biol 2018
14
30


Control mechanism of the circadian clock for timing of cell division in vivo.
Takuya Matsuo, Shun Yamaguchi, Shigeru Mitsui, Aki Emi, Fukuko Shimoda, Hitoshi Okamura. Science 2003
754
30

SIRT1 regulates circadian clock gene expression through PER2 deacetylation.
Gad Asher, David Gatfield, Markus Stratmann, Hans Reinke, Charna Dibner, Florian Kreppel, Raul Mostoslavsky, Frederick W Alt, Ueli Schibler. Cell 2008
844
30

Requirement for math5 in the development of retinal ganglion cells.
S W Wang, B S Kim, K Ding, H Wang, D Sun, R L Johnson, W H Klein, L Gan. Genes Dev 2001
360
20

Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate.
Fuguo Wu, Tadeusz J Kaczynski, Santhosh Sethuramanujam, Renzhong Li, Varsha Jain, Malcolm Slaughter, Xiuqian Mu. Proc Natl Acad Sci U S A 2015
53
20


Midline signals regulate retinal neurogenesis in zebrafish.
I Masai, D L Stemple, H Okamoto, S W Wilson. Neuron 2000
163
20

Math5 is required for retinal ganglion cell and optic nerve formation.
N L Brown, S Patel, J Brzezinski, T Glaser. Development 2001
363
20

Timing of expression of the core clock gene Bmal1 influences its effects on aging and survival.
Guangrui Yang, Lihong Chen, Gregory R Grant, Georgios Paschos, Wen-Liang Song, Erik S Musiek, Vivian Lee, Sarah C McLoughlin, Tilo Grosser, George Cotsarelis,[...]. Sci Transl Med 2016
130
20

Circadian rhythms in cultured mammalian retina.
G Tosini, M Menaker. Science 1996
535
20


limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
20


Dual modes of CLOCK:BMAL1 inhibition mediated by Cryptochrome and Period proteins in the mammalian circadian clock.
Rui Ye, Cristopher P Selby, Yi-Ying Chiou, Irem Ozkan-Dagliyan, Shobhan Gaddameedhi, Aziz Sancar. Genes Dev 2014
97
20

Genetics of circadian rhythms in Mammalian model organisms.
Phillip L Lowrey, Joseph S Takahashi. Adv Genet 2011
330
20

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
20

System-level identification of transcriptional circuits underlying mammalian circadian clocks.
Hiroki R Ueda, Satoko Hayashi, Wenbin Chen, Motoaki Sano, Masayuki Machida, Yasufumi Shigeyoshi, Masamitsu Iino, Seiichi Hashimoto. Nat Genet 2005
546
20

Role of circadian gene Clock during differentiation of mouse pluripotent stem cells.
Chao Lu, Yang Yang, Ran Zhao, Bingxuan Hua, Chen Xu, Zuoqin Yan, Ning Sun, Ruizhe Qian. Protein Cell 2016
17
20

Coordinated transcription of key pathways in the mouse by the circadian clock.
Satchidananda Panda, Marina P Antoch, Brooke H Miller, Andrew I Su, Andrew B Schook, Marty Straume, Peter G Schultz, Steve A Kay, Joseph S Takahashi, John B Hogenesch. Cell 2002
20

The circadian clock and cell cycle: interconnected biological circuits.
Selma Masri, Marlene Cervantes, Paolo Sassone-Corsi. Curr Opin Cell Biol 2013
61
20


The Nuclear Receptor and Clock Repressor Rev-erbα Suppresses Myogenesis.
Somik Chatterjee, Hongshan Yin, Weini Li, Jeongkyung Lee, Vijay K Yechoor, Ke Ma. Sci Rep 2019
16
20

Central and peripheral circadian clocks in mammals.
Jennifer A Mohawk, Carla B Green, Joseph S Takahashi. Annu Rev Neurosci 2012
20

A circadian gene expression atlas in mammals: implications for biology and medicine.
Ray Zhang, Nicholas F Lahens, Heather I Ballance, Michael E Hughes, John B Hogenesch. Proc Natl Acad Sci U S A 2014
933
20

PER2 regulation of mammary gland development.
Cole M McQueen, Emily E Schmitt, Tapasree R Sarkar, Jessica Elswood, Richard P Metz, David Earnest, Monique Rijnkels, Weston W Porter. Development 2018
13
20

Circadian clock genes contribute to the regulation of hair follicle cycling.
Kevin K Lin, Vivek Kumar, Mikhail Geyfman, Darya Chudova, Alexander T Ihler, Padhraic Smyth, Ralf Paus, Joseph S Takahashi, Bogi Andersen. PLoS Genet 2009
107
20

Diurnal transcriptome atlas of a primate across major neural and peripheral tissues.
Ludovic S Mure, Hiep D Le, Giorgia Benegiamo, Max W Chang, Luis Rios, Ngalla Jillani, Maina Ngotho, Thomas Kariuki, Ouria Dkhissi-Benyahya, Howard M Cooper,[...]. Science 2018
222
20

Cry2 Is Critical for Circadian Regulation of Myogenic Differentiation by Bclaf1-Mediated mRNA Stabilization of Cyclin D1 and Tmem176b.
Matthew Lowe, Jacob Lage, Ellen Paatela, Dane Munson, Reilly Hostager, Ce Yuan, Nobuko Katoku-Kikyo, Mercedes Ruiz-Estevez, Yoko Asakura, James Staats,[...]. Cell Rep 2018
14
20

CLOCK-mediated acetylation of BMAL1 controls circadian function.
Jun Hirayama, Saurabh Sahar, Benedetto Grimaldi, Teruya Tamaru, Ken Takamatsu, Yasukazu Nakahata, Paolo Sassone-Corsi. Nature 2007
333
20

Human epidermal stem cell function is regulated by circadian oscillations.
Peggy Janich, Kiana Toufighi, Guiomar Solanas, Nuno Miguel Luis, Susann Minkwitz, Luis Serrano, Ben Lehner, Salvador Aznar Benitah. Cell Stem Cell 2013
88
20

Circadian clock feedback cycle through NAMPT-mediated NAD+ biosynthesis.
Kathryn Moynihan Ramsey, Jun Yoshino, Cynthia S Brace, Dana Abrassart, Yumiko Kobayashi, Biliana Marcheva, Hee-Kyung Hong, Jason L Chong, Ethan D Buhr, Choogon Lee,[...]. Science 2009
702
20

Rhythmic histone acetylation underlies transcription in the mammalian circadian clock.
Jean-Pierre Etchegaray, Choogon Lee, Paul A Wade, Steven M Reppert. Nature 2003
482
20

Reprogramming Müller Glia to Regenerate Retinal Neurons.
Manuela Lahne, Mikiko Nagashima, David R Hyde, Peter F Hitchcock. Annu Rev Vis Sci 2020
18
20


Mammalian Period represses and de-represses transcription by displacing CLOCK-BMAL1 from promoters in a Cryptochrome-dependent manner.
Yi-Ying Chiou, Yanyan Yang, Naim Rashid, Rui Ye, Christopher P Selby, Aziz Sancar. Proc Natl Acad Sci U S A 2016
56
20

Circadian control of the NAD+ salvage pathway by CLOCK-SIRT1.
Yasukazu Nakahata, Saurabh Sahar, Giuseppe Astarita, Milota Kaluzova, Paolo Sassone-Corsi. Science 2009
748
20

Intestinal Stem Cells Exhibit Conditional Circadian Clock Function.
Kathyani Parasram, Nathaniel Bernardon, Maha Hammoud, Hanna Chang, Li He, Norbert Perrimon, Phillip Karpowicz. Stem Cell Reports 2018
11
20

The circadian molecular clock creates epidermal stem cell heterogeneity.
Peggy Janich, Gloria Pascual, Anna Merlos-Suárez, Eduard Batlle, Jürgen Ripperger, Urs Albrecht, Hai-Ying M Cheng, Karl Obrietan, Luciano Di Croce, Salvador Aznar Benitah. Nature 2011
190
20

A molecular mechanism for circadian clock negative feedback.
Hao A Duong, Maria S Robles, Darko Knutti, Charles J Weitz. Science 2011
167
20

Glucose sensor O-GlcNAcylation coordinates with phosphorylation to regulate circadian clock.
Krista Kaasik, Saul Kivimäe, Jasmina J Allen, Robert J Chalkley, Yong Huang, Kristin Baer, Holger Kissel, Alma L Burlingame, Kevan M Shokat, Louis J Ptáček,[...]. Cell Metab 2013
145
20

Mammalian TIMELESS is involved in period determination and DNA damage-dependent phase advancing of the circadian clock.
Erik Engelen, Roel C Janssens, Kazuhiro Yagita, Veronique A J Smits, Gijsbertus T J van der Horst, Filippo Tamanini. PLoS One 2013
45
20

RNA-methylation-dependent RNA processing controls the speed of the circadian clock.
Jean-Michel Fustin, Masao Doi, Yoshiaki Yamaguchi, Hayashi Hida, Shinichi Nishimura, Minoru Yoshida, Takayuki Isagawa, Masaki Suimye Morioka, Hideaki Kakeya, Ichiro Manabe,[...]. Cell 2013
479
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.