A citation-based method for searching scientific literature

Ming-Ju Tsai, Wei-An Chang, Ssu-Hui Liao, Kuo-Feng Chang, Chau-Chyun Sheu, Po-Lin Kuo. Int J Mol Sci 2019
Times Cited: 12







List of co-cited articles
46 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Fibroblasts from idiopathic pulmonary fibrosis and normal lungs differ in growth rate, apoptosis, and tissue inhibitor of metalloproteinases expression.
C Ramos, M Montaño, J García-Alvarez, V Ruiz, B D Uhal, M Selman, A Pardo. Am J Respir Cell Mol Biol 2001
265
33

Trimmomatic: a flexible trimmer for Illumina sequence data.
Anthony M Bolger, Marc Lohse, Bjoern Usadel. Bioinformatics 2014
25

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
25

miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades.
Marc R Friedländer, Sebastian D Mackowiak, Na Li, Wei Chen, Nikolaus Rajewsky. Nucleic Acids Res 2012
25

MiRmap: comprehensive prediction of microRNA target repression strength.
Charles E Vejnar, Evgeny M Zdobnov. Nucleic Acids Res 2012
188
25

Predicting effective microRNA target sites in mammalian mRNAs.
Vikram Agarwal, George W Bell, Jin-Wu Nam, David P Bartel. Elife 2015
25


The STRING database in 2017: quality-controlled protein-protein association networks, made broadly accessible.
Damian Szklarczyk, John H Morris, Helen Cook, Michael Kuhn, Stefan Wyder, Milan Simonovic, Alberto Santos, Nadezhda T Doncheva, Alexander Roth, Peer Bork,[...]. Nucleic Acids Res 2017
16

Systematic analysis of transcriptomic profiles of COPD airway epithelium using next-generation sequencing and bioinformatics.
Wei-An Chang, Ming-Ju Tsai, Shu-Fang Jian, Chau-Chyun Sheu, Po-Lin Kuo. Int J Chron Obstruct Pulmon Dis 2018
13
16

Identification of novel genetic regulations associated with airway epithelial homeostasis using next-generation sequencing data and bioinformatics approaches.
Chau-Chyun Sheu, Ming-Ju Tsai, Feng-Wei Chen, Kuo-Feng Chang, Wei-An Chang, Inn-Wen Chong, Po-Lin Kuo, Ya-Ling Hsu. Oncotarget 2017
16
16

A survey of current software for network analysis in molecular biology.
Sterling Thomas, Danail Bonchev. Hum Genomics 2010
128
16

Possible mechanisms mediating apoptosis of bronchial epithelial cells in chronic obstructive pulmonary disease - A next-generation sequencing approach.
Ming-Ju Tsai, Wei-An Chang, Shu-Fang Jian, Kuo-Feng Chang, Chau-Chyun Sheu, Po-Lin Kuo. Pathol Res Pract 2018
15
16

Bioinformatic analysis of next‑generation sequencing data to identify dysregulated genes in fibroblasts of idiopathic pulmonary fibrosis.
Chau-Chyun Sheu, Wei-An Chang, Ming-Ju Tsai, Ssu-Hui Liao, Inn-Wen Chong, Po-Lin Kuo. Int J Mol Med 2019
8
25

Deducting MicroRNA-Mediated Changes Common in Bronchial Epithelial Cells of Asthma and Chronic Obstructive Pulmonary Disease-A Next-Generation Sequencing-Guided Bioinformatic Approach.
Ming-Ju Tsai, Yu-Chen Tsai, Wei-An Chang, Yi-Shiuan Lin, Pei-Hsun Tsai, Chau-Chyun Sheu, Po-Lin Kuo, Ya-Ling Hsu. Int J Mol Sci 2019
21
16

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks.
Cole Trapnell, Adam Roberts, Loyal Goff, Geo Pertea, Daehwan Kim, David R Kelley, Harold Pimentel, Steven L Salzberg, John L Rinn, Lior Pachter. Nat Protoc 2012
16



Cellular and in vivo hepatotoxicity caused by green tea phenolic acids and catechins.
Giuseppe Galati, Alison Lin, Amira M Sultan, Peter J O'Brien. Free Radic Biol Med 2006
213
16

Green tea catechin, epigallocatechin-3-gallate (EGCG): mechanisms, perspectives and clinical applications.
Brahma N Singh, Sharmila Shankar, Rakesh K Srivastava. Biochem Pharmacol 2011
700
16

Tannic acid prevents macrophage-induced pro-fibrotic response in lung epithelial cells via suppressing TLR4-mediated macrophage polarization.
Ayyanar Sivanantham, Dhamotharan Pattarayan, Nandhine Rajasekar, Adithi Kannan, Lakshmanan Loganathan, Ramalingam Bethunaickan, Santanu Kar Mahapatra, Rajaguru Palanichamy, Karthikeyan Muthusamy, Subbiah Rajasekaran. Inflamm Res 2019
12
16


Formation and activation of fibroblast spheroids depend on fibronectin-integrin interaction.
Pertteli Salmenperä, Esko Kankuri, Jozef Bizik, Vappu Sirén, Ismo Virtanen, Seiichiro Takahashi, Michael Leiss, Reinhard Fässler, Antti Vaheri. Exp Cell Res 2008
54
16

Fibroblast viability and phenotypic changes within glycated stiffened three-dimensional collagen matrices.
Vanesa Vicens-Zygmunt, Susanna Estany, Adai Colom, Ana Montes-Worboys, Carlos Machahua, Andrea Juliana Sanabria, Roger Llatjos, Ignacio Escobar, Frederic Manresa, Jordi Dorca,[...]. Respir Res 2015
24
16

Deficient repair response of IPF fibroblasts in a co-culture model of epithelial injury and repair.
Sony Prasad, Cory M Hogaboam, Gabor Jarai. Fibrogenesis Tissue Repair 2014
30
16

Photodefinable polydimethylsiloxane (PDMS) for rapid lab-on-a-chip prototyping.
Ali Asgar S Bhagat, Preetha Jothimuthu, Ian Papautsky. Lab Chip 2007
58
16

An official ATS/ERS/JRS/ALAT statement: idiopathic pulmonary fibrosis: evidence-based guidelines for diagnosis and management.
Ganesh Raghu, Harold R Collard, Jim J Egan, Fernando J Martinez, Juergen Behr, Kevin K Brown, Thomas V Colby, Jean-François Cordier, Kevin R Flaherty, Joseph A Lasky,[...]. Am J Respir Crit Care Med 2011
16

Feedback amplification of fibrosis through matrix stiffening and COX-2 suppression.
Fei Liu, Justin D Mih, Barry S Shea, Alvin T Kho, Asma S Sharif, Andrew M Tager, Daniel J Tschumperlin. J Cell Biol 2010
429
16

Changes in extracellular matrix and tissue viscoelasticity in bleomycin-induced lung fibrosis. Temporal aspects.
T Ebihara, N Venkatesan, R Tanaka, M S Ludwig. Am J Respir Crit Care Med 2000
92
16

PDMS substrate stiffness affects the morphology and growth profiles of cancerous prostate and melanoma cells.
Szymon Prauzner-Bechcicki, Joanna Raczkowska, Ewelina Madej, Joanna Pabijan, Jaroslav Lukes, Josef Sepitka, Jakub Rysz, Kamil Awsiuk, Andrzej Bernasik, Andrzej Budkowski,[...]. J Mech Behav Biomed Mater 2015
33
16

UV-modulated substrate rigidity for multiscale study of mechanoresponsive cellular behaviors.
Yubing Sun, Liang-Ting Jiang, Ryoji Okada, Jianping Fu. Langmuir 2012
21
16

Idiopathic pulmonary fibrosis.
Fernando J Martinez, Harold R Collard, Annie Pardo, Ganesh Raghu, Luca Richeldi, Moises Selman, Jeffrey J Swigris, Hiroyuki Taniguchi, Athol U Wells. Nat Rev Dis Primers 2017
294
16

Diagnosis of Idiopathic Pulmonary Fibrosis. An Official ATS/ERS/JRS/ALAT Clinical Practice Guideline.
Ganesh Raghu, Martine Remy-Jardin, Jeffrey L Myers, Luca Richeldi, Christopher J Ryerson, David J Lederer, Juergen Behr, Vincent Cottin, Sonye K Danoff, Ferran Morell,[...]. Am J Respir Crit Care Med 2018
16

Matrices of physiologic stiffness potently inactivate idiopathic pulmonary fibrosis fibroblasts.
Aleksandar Marinković, Fei Liu, Daniel J Tschumperlin. Am J Respir Cell Mol Biol 2013
87
16


The rising incidence of idiopathic pulmonary fibrosis in the U.K.
V Navaratnam, K M Fleming, J West, C J P Smith, R G Jenkins, A Fogarty, R B Hubbard. Thorax 2011
295
16

Quasi-Spherical Cell Clusters Induced by a Polyelectrolyte Multilayer.
Carlos J Arias, Thomas C S Keller, Joseph B Schlenoff. Langmuir 2015
8
25

Acellular normal and fibrotic human lung matrices as a culture system for in vitro investigation.
Adam J Booth, Ryan Hadley, Ashley M Cornett, Alyssa A Dreffs, Stephanie A Matthes, Jessica L Tsui, Kevin Weiss, Jeffrey C Horowitz, Vincent F Fiore, Thomas H Barker,[...]. Am J Respir Crit Care Med 2012
330
16


Fibroblast contractility: usual interstitial pneumonia and nonspecific interstitial pneumonia.
H Miki, T Mio, S Nagai, Y Hoshino, T Nagao, M Kitaichi, T Izumi. Am J Respir Crit Care Med 2000
26
16

Increased deposition of glycosaminoglycans and altered structure of heparan sulfate in idiopathic pulmonary fibrosis.
Gunilla Westergren-Thorsson, Ulf Hedström, Annika Nybom, Emil Tykesson, Emma Åhrman, Marie Hornfelt, Marco Maccarana, Toin H van Kuppevelt, Göran Dellgren, Marie Wildt,[...]. Int J Biochem Cell Biol 2017
31
16

The mechanical memory of lung myofibroblasts.
Jenna L Balestrini, Sidharth Chaudhry, Vincent Sarrazy, Anne Koehler, Boris Hinz. Integr Biol (Camb) 2012
171
16

Epithelial contribution to the profibrotic stiff microenvironment and myofibroblast population in lung fibrosis.
Marta Gabasa, Paula Duch, Ignasi Jorba, Alícia Giménez, Roberto Lugo, Irina Pavelescu, Fernando Rodríguez-Pascual, Maria Molina-Molina, Antoni Xaubet, Javier Pereda,[...]. Mol Biol Cell 2017
17
16

Idiopathic Pulmonary Fibrosis (IPF): An Overview.
Shaney L Barratt, Andrew Creamer, Conal Hayton, Nazia Chaudhuri. J Clin Med 2018
87
16

Tannic acid attenuates TGF-β1-induced epithelial-to-mesenchymal transition by effectively intervening TGF-β signaling in lung epithelial cells.
Dhamotharan Pattarayan, Ayyanar Sivanantham, Venkateshwaran Krishnaswami, Lakshmanan Loganathan, Rajaguru Palanichamy, Subramanian Natesan, Karthikeyan Muthusamy, Subbiah Rajasekaran. J Cell Physiol 2018
34
16

The epithelium in idiopathic pulmonary fibrosis: breaking the barrier.
Ana Camelo, Rebecca Dunmore, Matthew A Sleeman, Deborah L Clarke. Front Pharmacol 2014
126
16

Idiopathic pulmonary fibrosis.
Luca Richeldi, Harold R Collard, Mark G Jones. Lancet 2017
473
16

Integrated eicosanoid lipidomics and gene expression reveal decreased prostaglandin catabolism and increased 5-lipoxygenase expression in aggressive subtypes of endometrial cancer.
Michele Cummings, Karen A Massey, Georgia Mappa, Nafisa Wilkinson, Richard Hutson, Sarika Munot, Sam Saidi, David Nugent, Timothy Broadhead, Alexander I Wright,[...]. J Pathol 2019
12
8

Predicting poor prognosis recurrence in women with endometrial cancer: a nomogram developed by the FRANCOGYN study group.
Lobna Ouldamer, Sofiane Bendifallah, Gilles Body, Cyril Touboul, Olivier Graesslin, Emilie Raimond, Pierre Collinet, Charles Coutant, Vincent Lavoué, Jean Lévêque,[...]. Br J Cancer 2016
28
8

Risk factors for endometrial cancer: An umbrella review of the literature.
Olivia Raglan, Ilkka Kalliala, Georgios Markozannes, Sofia Cividini, Marc J Gunter, Jaya Nautiyal, Hani Gabra, Evangelos Paraskevaidis, Pierre Martin-Hirsch, Kostas K Tsilidis,[...]. Int J Cancer 2019
71
8



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.