A citation-based method for searching scientific literature

Mohd Amir, Shahnawaz Ahmad, Shahzaib Ahamad, Vijay Kumar, Taj Mohammad, Ravins Dohare, Mohamed F Alajmi, Tabish Rehman, Afzal Hussain, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2020
Times Cited: 13







List of co-cited articles
107 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Investigation of deleterious effects of nsSNPs in the POT1 gene: a structural genomics-based approach to understand the mechanism of cancer development.
Mohd Amir, Vijay Kumar, Taj Mohammad, Ravins Dohare, Afzal Hussain, Md Tabish Rehman, Perwez Alam, Mohamed F Alajmi, Asimul Islam, Faizan Ahmad,[...]. J Cell Biochem 2019
18
53

Investigating architecture and structure-function relationships in cold shock DNA-binding domain family using structural genomics-based approach.
Mohd Amir, Vijay Kumar, Ravins Dohare, Md Tabish Rehman, Afzal Hussain, Mohamed F Alajmi, Hesham R El-Seedi, Hani Mutlak A Hassan, Asimul Islam, Faizan Ahmad,[...]. Int J Biol Macromol 2019
8
75

Structural and functional impact of non-synonymous SNPs in the CST complex subunit TEN1: structural genomics approach.
Mohd Amir, Vijay Kumar, Taj Mohammad, Ravins Dohare, Md Tabish Rehman, Mohamed F Alajmi, Afzal Hussain, Faizan Ahmad, Md Imtaiyaz Hassan. Biosci Rep 2019
11
54


Molecular mechanism of Ras-related protein Rab-5A and effect of mutations in the catalytically active phosphate-binding loop.
Faez Iqbal Khan, Mohd Aamir, Dong-Qing Wei, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2017
36
38

Identification and evaluation of bioactive natural products as potential inhibitors of human microtubule affinity-regulating kinase 4 (MARK4).
Taj Mohammad, Faez Iqbal Khan, Kevin A Lobb, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2019
42
38

Structural Analysis and Conformational Dynamics of STN1 Gene Mutations Involved in Coat Plus Syndrome.
Mohd Amir, Taj Mohammad, Vijay Kumar, Mohammed F Alajmi, Md Tabish Rehman, Afzal Hussain, Perwez Alam, Ravins Dohare, Asimul Islam, Faizan Ahmad,[...]. Front Mol Biosci 2019
16
38

Investigation of inhibitory potential of quercetin to the pyruvate dehydrogenase kinase 3: Towards implications in anticancer therapy.
Rashmi Dahiya, Taj Mohammad, Sonam Roy, Saleha Anwar, Preeti Gupta, Anzarul Haque, Parvez Khan, Syed Naqui Kazim, Asimul Islam, Faizan Ahmad,[...]. Int J Biol Macromol 2019
30
30

Predicting functional effect of human missense mutations using PolyPhen-2.
Ivan Adzhubei, Daniel M Jordan, Shamil R Sunyaev. Curr Protoc Hum Genet 2013
30


GdmCl-induced unfolding studies of human carbonic anhydrase IX: a combined spectroscopic and MD simulation approach.
Amresh Prakash, Danish Idrees, Md Anzarul Haque, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2017
19
23


Urea-induced denaturation of human calcium/calmodulin-dependent protein kinase IV: a combined spectroscopic and MD simulation studies.
Huma Naz, Mohd Shahbaaz, Md Anzarul Haque, Krishna Bisetty, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2017
22
23

Curcumin specifically binds to the human calcium-calmodulin-dependent protein kinase IV: fluorescence and molecular dynamics simulation studies.
Nasimul Hoda, Huma Naz, Ehtesham Jameel, Ashutosh Shandilya, Sharmistha Dey, Md Imtaiyaz Hassan, Faizan Ahmad, B Jayaram. J Biomol Struct Dyn 2016
45
23

Large scale analysis of the mutational landscape in β-glucuronidase: A major player of mucopolysaccharidosis type VII.
Faez Iqbal Khan, Mohd Shahbaaz, Krishna Bisetty, Abdul Waheed, William S Sly, Faizan Ahmad, Md Imtaiyaz Hassan. Gene 2016
51
23

GROMACS: fast, flexible, and free.
David Van Der Spoel, Erik Lindahl, Berk Hess, Gerrit Groenhof, Alan E Mark, Herman J C Berendsen. J Comput Chem 2005
23

Effect of pH on the structure, function, and stability of human calcium/calmodulin-dependent protein kinase IV: combined spectroscopic and MD simulation studies.
Huma Naz, Mohd Shahbaaz, Krishna Bisetty, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. Biochem Cell Biol 2016
22
23

Binding mechanism of caffeic acid and simvastatin to the integrin linked kinase for therapeutic implications: a comparative docking and MD simulation studies.
Mehak Gulzar, Shahid Ali, Faez Iqbal Khan, Parvez Khan, Pankaj Taneja, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2019
24
23

Structural characterization of MG and pre-MG states of proteins by MD simulations, NMR, and other techniques.
Abdullah Naiyer, Md Imtaiyaz Hassan, Asimul Islam, Monica Sundd, Faizan Ahmad. J Biomol Struct Dyn 2015
38
23



DynaMut: predicting the impact of mutations on protein conformation, flexibility and stability.
Carlos Hm Rodrigues, Douglas Ev Pires, David B Ascher. Nucleic Acids Res 2018
232
23

Mammalian telomeres end in a large duplex loop.
J D Griffith, L Comeau, S Rosenfield, R M Stansel, A Bianchi, H Moss, T de Lange. Cell 1999
23

Advancements in Docking and Molecular Dynamics Simulations Towards Ligand-receptor Interactions and Structure-function Relationships.
Ahmad Abu Turab Naqvi, Taj Mohammad, Gulam Mustafa Hasan, Md Imtaiyaz Hassan. Curr Top Med Chem 2018
39
23

How shelterin protects mammalian telomeres.
Wilhelm Palm, Titia de Lange. Annu Rev Genet 2008
23


Investigation of conformational dynamics of Tyr89Cys mutation in protection of telomeres 1 gene associated with familial melanoma.
Mohd Amir, Shahzaib Ahamad, Taj Mohammad, Deeba Shamim Jairajpuri, Gulam Mustafa Hasan, Ravins Dohare, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2021
9
33

Conserved telomere maintenance component 1 interacts with STN1 and maintains chromosome ends in higher eukaryotes.
Yulia V Surovtseva, Dmitri Churikov, Kara A Boltz, Xiangyu Song, Jonathan C Lamb, Ross Warrington, Katherine Leehy, Michelle Heacock, Carolyn M Price, Dorothy E Shippen. Mol Cell 2009
190
23

Sequence, structure and evolutionary analysis of cold shock domain proteins, a member of OB fold family.
Mohd Amir, Vijay Kumar, Ravins Dohare, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Evol Biol 2018
12
25

Human CST promotes telomere duplex replication and general replication restart after fork stalling.
Jason A Stewart, Feng Wang, Mary F Chaiken, Christopher Kasbek, Paul D Chastain, Woodring E Wright, Carolyn M Price. EMBO J 2012
129
23

SIFT web server: predicting effects of amino acid substitutions on proteins.
Ngak-Leng Sim, Prateek Kumar, Jing Hu, Steven Henikoff, Georg Schneider, Pauline C Ng. Nucleic Acids Res 2012
942
23

Structural Features of Nucleoprotein CST/Shelterin Complex Involved in the Telomere Maintenance and Its Association with Disease Mutations.
Mohd Amir, Parvez Khan, Aarfa Queen, Ravins Dohare, Mohamed F Alajmi, Afzal Hussain, Asimul Islam, Faizan Ahmad, Imtaiyaz Hassan. Cells 2020
9
33

SDM: a server for predicting effects of mutations on protein stability.
Arun Prasad Pandurangan, Bernardo Ochoa-Montaño, David B Ascher, Tom L Blundell. Nucleic Acids Res 2017
174
23

Impact of amino acid substitution in the kinase domain of Bruton tyrosine kinase and its association with X-linked agammaglobulinemia.
Taj Mohammad, Mohd Amir, Kartikay Prasad, Sagar Batra, Vijay Kumar, Afzal Hussain, Md Tabish Rehman, Mohamed F AlAjmi, Md Imtaiyaz Hassan. Int J Biol Macromol 2020
4
75


CUPSAT: prediction of protein stability upon point mutations.
Vijaya Parthiban, M Michael Gromiha, Dietmar Schomburg. Nucleic Acids Res 2006
331
15

The RING 2.0 web server for high quality residue interaction networks.
Damiano Piovesan, Giovanni Minervini, Silvio C E Tosatto. Nucleic Acids Res 2016
169
15

Effect of pH on the stability of hemochromatosis factor E: a combined spectroscopic and molecular dynamics simulation-based study.
Parvez Khan, Ashutosh Shandilya, B Jayaram, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2017
13
15

Estimation of thermodynamic stability of human carbonic anhydrase IX from urea-induced denaturation and MD simulation studies.
Danish Idrees, Safikur Rahman, Mohd Shahbaaz, Md Anzarul Haque, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. Int J Biol Macromol 2017
13
15

PKR-inhibitor binds efficiently with human microtubule affinity-regulating kinase 4.
Farha Naz, Mohd Shahbaaz, Shama Khan, Krishna Bisetty, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Mol Graph Model 2015
20
15

Bio3d: an R package for the comparative analysis of protein structures.
Barry J Grant, Ana P C Rodrigues, Karim M ElSawy, J Andrew McCammon, Leo S D Caves. Bioinformatics 2006
743
15


Defining and searching for structural motifs using DeepView/Swiss-PdbViewer.
Maria U Johansson, Vincent Zoete, Olivier Michielin, Nicolas Guex. BMC Bioinformatics 2012
139
15

Spectroscopic and MD simulation studies on unfolding processes of mitochondrial carbonic anhydrase VA induced by urea.
Danish Idrees, Amresh Prakash, Md Anzarul Haque, Asimul Islam, Faizan Ahmad, Md Imtaiyaz Hassan. J Biomol Struct Dyn 2016
17
15


Protein structure analysis of mutations causing inheritable diseases. An e-Science approach with life scientist friendly interfaces.
Hanka Venselaar, Tim A H Te Beek, Remko K P Kuipers, Maarten L Hekkelman, Gert Vriend. BMC Bioinformatics 2010
429
15

VMD: visual molecular dynamics.
W Humphrey, A Dalke, K Schulten. J Mol Graph 1996
15

A review of methods available to estimate solvent-accessible surface areas of soluble proteins in the folded and unfolded states.
Syed Ausaf Ali, Md Imtaiyaz Hassan, Asimul Islam, Faizan Ahmad. Curr Protein Pept Sci 2014
54
15




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.