A citation-based method for searching scientific literature

Himani Tandon, Arun Sharma, Saruchi Wadhwa, Raghavan Varadarajan, Ramandeep Singh, Narayanaswamy Srinivasan, Sankaran Sandhya. J Biol Chem 2019
Times Cited: 15







List of co-cited articles
161 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity



System-Wide Analysis Unravels the Differential Regulation and In Vivo Essentiality of Virulence-Associated Proteins B and C Toxin-Antitoxin Systems of Mycobacterium tuberculosis.
Sakshi Agarwal, Prabhakar Tiwari, Amar Deep, Saqib Kidwai, Shamba Gupta, Krishan Gopal Thakur, Ramandeep Singh. J Infect Dis 2018
23
60

MazF ribonucleases promote Mycobacterium tuberculosis drug tolerance and virulence in guinea pigs.
Prabhakar Tiwari, Garima Arora, Mamta Singh, Saqib Kidwai, Om Prakash Narayan, Ramandeep Singh. Nat Commun 2015
96
53


Toxins, Targets, and Triggers: An Overview of Toxin-Antitoxin Biology.
Alexander Harms, Ditlev Egeskov Brodersen, Namiko Mitarai, Kenn Gerdes. Mol Cell 2018
312
46

Type II Toxin-Antitoxin Systems: Evolution and Revolutions.
Nathan Fraikin, Frédéric Goormaghtigh, Laurence Van Melderen. J Bacteriol 2020
106
46

Co-expression network analysis of toxin-antitoxin loci in Mycobacterium tuberculosis reveals key modulators of cellular stress.
Amita Gupta, Balaji Venkataraman, Madavan Vasudevan, Kiran Gopinath Bankar. Sci Rep 2017
42
46

Toxin-antitoxin systems in bacterial growth arrest and persistence.
Rebecca Page, Wolfgang Peti. Nat Chem Biol 2016
408
40


Toxin-antitoxins and bacterial virulence.
Damián Lobato-Márquez, Ramón Díaz-Orejas, Francisco García-Del Portillo. FEMS Microbiol Rev 2016
112
40

Structural, functional and biological insights into the role of Mycobacterium tuberculosis VapBC11 toxin-antitoxin system: targeting a tRNase to tackle mycobacterial adaptation.
Amar Deep, Prabhakar Tiwari, Sakshi Agarwal, Soni Kaundal, Saqib Kidwai, Ramandeep Singh, Krishan G Thakur. Nucleic Acids Res 2018
19
40


Toxin-antitoxin systems in bacteria and archaea.
Yoshihiro Yamaguchi, Jung-Ho Park, Masayori Inouye. Annu Rev Genet 2011
429
40

TASmania: A bacterial Toxin-Antitoxin Systems database.
Hatice Akarsu, Patricia Bordes, Moise Mansour, Donna-Joe Bigot, Pierre Genevaux, Laurent Falquet. PLoS Comput Biol 2019
47
40

Polyphosphate deficiency in Mycobacterium tuberculosis is associated with enhanced drug susceptibility and impaired growth in guinea pigs.
Ramandeep Singh, Mamta Singh, Garima Arora, Santosh Kumar, Prabhakar Tiwari, Saqib Kidwai. J Bacteriol 2013
58
33

Toxin-antitoxin systems and regulatory mechanisms in Mycobacterium tuberculosis.
Richard A Slayden, Clinton C Dawson, Jason E Cummings. Pathog Dis 2018
47
33

VapCs of Mycobacterium tuberculosis cleave RNAs essential for translation.
Kristoffer Winther, Jai J Tree, David Tollervey, Kenn Gerdes. Nucleic Acids Res 2016
70
33

Noncognate Mycobacterium tuberculosis toxin-antitoxins can physically and functionally interact.
Ling Zhu, Jared D Sharp, Hiroshi Kobayashi, Nancy A Woychik, Masayori Inouye. J Biol Chem 2010
53
33

Multiple toxin-antitoxin systems in Mycobacterium tuberculosis.
Ambre Sala, Patricia Bordes, Pierre Genevaux. Toxins (Basel) 2014
154
33


Toxin-Antitoxin Modules Are Pliable Switches Activated by Multiple Protease Pathways.
Meenakumari Muthuramalingam, John C White, Christina R Bourne. Toxins (Basel) 2016
55
26

Evaluation of a nutrient starvation model of Mycobacterium tuberculosis persistence by gene and protein expression profiling.
Joanna C Betts, Pauline T Lukey, Linda C Robb, Ruth A McAdam, Ken Duncan. Mol Microbiol 2002
26

Prophages and Growth Dynamics Confound Experimental Results with Antibiotic-Tolerant Persister Cells.
Alexander Harms, Cinzia Fino, Michael A Sørensen, Szabolcs Semsey, Kenn Gerdes. mBio 2017
128
26


Structure and proposed activity of a member of the VapBC family of toxin-antitoxin systems. VapBC-5 from Mycobacterium tuberculosis.
Linda Miallau, Michael Faller, Janet Chiang, Mark Arbing, Feng Guo, Duilio Cascio, David Eisenberg. J Biol Chem 2009
105
26

Toxin-antitoxin systems as multilevel interaction systems.
Nathalie Goeders, Laurence Van Melderen. Toxins (Basel) 2014
157
26


YeeU enhances the bundling of cytoskeletal polymers of MreB and FtsZ, antagonizing the CbtA (YeeV) toxicity in Escherichia coli.
Hisako Masuda, Qian Tan, Naoki Awano, Kuen-Phon Wu, Masayori Inouye. Mol Microbiol 2012
160
26

Emerging Roles of Toxin-Antitoxin Modules in Bacterial Pathogenesis.
Barbara Kędzierska, Finbarr Hayes. Molecules 2016
76
26

Reassessing the Role of Type II Toxin-Antitoxin Systems in Formation of Escherichia coli Type II Persister Cells.
Frédéric Goormaghtigh, Nathan Fraikin, Marta Putrinš, Thibaut Hallaert, Vasili Hauryliuk, Abel Garcia-Pino, Andreas Sjödin, Sergo Kasvandik, Klas Udekwu, Tanel Tenson,[...]. mBio 2018
125
26


TADB 2.0: an updated database of bacterial type II toxin-antitoxin loci.
Yingzhou Xie, Yiqing Wei, Yue Shen, Xiaobin Li, Hao Zhou, Cui Tai, Zixin Deng, Hong-Yu Ou. Nucleic Acids Res 2018
124
26


A new type V toxin-antitoxin system where mRNA for toxin GhoT is cleaved by antitoxin GhoS.
Xiaoxue Wang, Dana M Lord, Hsin-Yao Cheng, Devon O Osbourne, Seok Hoon Hong, Viviana Sanchez-Torres, Cecilia Quiroga, Kevin Zheng, Torsten Herrmann, Wolfgang Peti,[...]. Nat Chem Biol 2012
204
26

Crystal structure of the MazE/MazF complex: molecular bases of antidote-toxin recognition.
Katsuhiko Kamada, Fumio Hanaoka, Stephen K Burley. Mol Cell 2003
236
26

MazF6 toxin of Mycobacterium tuberculosis demonstrates antitoxin specificity and is coupled to regulation of cell growth by a Soj-like protein.
Melissa V Ramirez, Clinton C Dawson, Rebecca Crew, Kathleen England, Richard A Slayden. BMC Microbiol 2013
16
26

Structural and Biochemical Characterization of the Cognate and Heterologous Interactions of the MazEF-mt9 TA System.
Ran Chen, Jie Tu, Yaoju Tan, Xingshan Cai, Chengwen Yang, Xiangyu Deng, Biyi Su, Shangming Ma, Xin Liu, Pinyun Ma,[...]. ACS Infect Dis 2019
7
57

Toxin-antitoxin systems: why so many, what for?
Laurence Van Melderen. Curr Opin Microbiol 2010
217
26

VapBC22 toxin-antitoxin system from Mycobacterium tuberculosis is required for pathogenesis and modulation of host immune response.
Sakshi Agarwal, Arun Sharma, Rania Bouzeyen, Amar Deep, Harsh Sharma, Kiran K Mangalaparthi, Keshava K Datta, Saqib Kidwai, Harsha Gowda, Raghavan Varadarajan,[...]. Sci Adv 2020
19
26



Specialized persister cells and the mechanism of multidrug tolerance in Escherichia coli.
Iris Keren, Devang Shah, Amy Spoering, Niilo Kaldalu, Kim Lewis. J Bacteriol 2004
572
20

The PIN-domain ribonucleases and the prokaryotic VapBC toxin-antitoxin array.
Vickery L Arcus, Joanna L McKenzie, Jennifer Robson, Gregory M Cook. Protein Eng Des Sel 2011
118
20

Toxin-antitoxin systems are ubiquitous and versatile modulators of prokaryotic cell fate.
Christopher F Schuster, Ralph Bertram. FEMS Microbiol Lett 2013
143
20

The enduring hypoxic response of Mycobacterium tuberculosis.
Tige R Rustad, Maria I Harrell, Reiling Liao, David R Sherman. PLoS One 2008
345
20

Specialized transduction: an efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis.
Stoyan Bardarov, Svetoslav Bardarov, Martin S Pavelka, Vasan Sambandamurthy, Michelle Larsen, JoAnn Tufariello, John Chan, Graham Hatfull, William R Jacobs. Microbiology (Reading) 2002
468
20

The crystal structure of the intact E. coli RelBE toxin-antitoxin complex provides the structural basis for conditional cooperativity.
Andreas Bøggild, Nicholas Sofos, Kasper R Andersen, Ane Feddersen, Ashley D Easter, Lori A Passmore, Ditlev E Brodersen. Structure 2012
69
20

Endoribonuclease type II toxin-antitoxin systems: functional or selfish?
Bhaskar Chandra Mohan Ramisetty, Ramachandran Sarojini Santhosh. Microbiology (Reading) 2017
27
20

Internalization of Salmonella by macrophages induces formation of nonreplicating persisters.
Sophie Helaine, Angela M Cheverton, Kathryn G Watson, Laura M Faure, Sophie A Matthews, David W Holden. Science 2014
453
20

Diversity of bacterial type II toxin-antitoxin systems: a comprehensive search and functional analysis of novel families.
Raphaël Leplae, Damien Geeraerts, Régis Hallez, Julien Guglielmini, Pierre Drèze, Laurence Van Melderen. Nucleic Acids Res 2011
280
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.