A citation-based method for searching scientific literature

Arshad Ayyaz, Sandeep Kumar, Bruno Sangiorgi, Bibaswan Ghoshal, Jessica Gosio, Shaida Ouladan, Mardi Fink, Seda Barutcu, Daniel Trcka, Jess Shen, Kin Chan, Jeffrey L Wrana, Alex Gregorieff. Nature 2019
Times Cited: 148







List of co-cited articles
1085 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Identification of stem cells in small intestine and colon by marker gene Lgr5.
Nick Barker, Johan H van Es, Jeroen Kuipers, Pekka Kujala, Maaike van den Born, Miranda Cozijnsen, Andrea Haegebarth, Jeroen Korving, Harry Begthel, Peter J Peters,[...]. Nature 2007
42

Yap-dependent reprogramming of Lgr5(+) stem cells drives intestinal regeneration and cancer.
Alex Gregorieff, Yu Liu, Mohammad R Inanlou, Yuliya Khomchuk, Jeffrey L Wrana. Nature 2015
292
37

YAP/TAZ-Dependent Reprogramming of Colonic Epithelium Links ECM Remodeling to Tissue Regeneration.
Shiro Yui, Luca Azzolin, Martti Maimets, Marianne Terndrup Pedersen, Robert P Fordham, Stine L Hansen, Hjalte L Larsen, Jordi Guiu, Mariana R P Alves, Carsten F Rundsten,[...]. Cell Stem Cell 2018
225
37

Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche.
Toshiro Sato, Robert G Vries, Hugo J Snippert, Marc van de Wetering, Nick Barker, Daniel E Stange, Johan H van Es, Arie Abo, Pekka Kujala, Peter J Peters,[...]. Nature 2009
37

Replacement of Lost Lgr5-Positive Stem Cells through Plasticity of Their Enterocyte-Lineage Daughters.
Paul W Tetteh, Onur Basak, Henner F Farin, Kay Wiebrands, Kai Kretzschmar, Harry Begthel, Maaike van den Born, Jeroen Korving, Frederic de Sauvage, Johan H van Es,[...]. Cell Stem Cell 2016
307
28

A reserve stem cell population in small intestine renders Lgr5-positive cells dispensable.
Hua Tian, Brian Biehs, Søren Warming, Kevin G Leong, Linda Rangell, Ophir D Klein, Frederic J de Sauvage. Nature 2011
756
27

Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts.
Toshiro Sato, Johan H van Es, Hugo J Snippert, Daniel E Stange, Robert G Vries, Maaike van den Born, Nick Barker, Noah F Shroyer, Marc van de Wetering, Hans Clevers. Nature 2011
26

Ascl2-Dependent Cell Dedifferentiation Drives Regeneration of Ablated Intestinal Stem Cells.
Kazutaka Murata, Unmesh Jadhav, Shariq Madha, Johan van Es, Justin Dean, Alessia Cavazza, Kai Wucherpfennig, Franziska Michor, Hans Clevers, Ramesh A Shivdasani. Cell Stem Cell 2020
70
37

Intestinal Enteroendocrine Lineage Cells Possess Homeostatic and Injury-Inducible Stem Cell Activity.
Kelley S Yan, Olivier Gevaert, Grace X Y Zheng, Benedict Anchang, Christopher S Probert, Kathryn A Larkin, Paige S Davies, Zhuan-Fen Cheng, John S Kaddis, Arnold Han,[...]. Cell Stem Cell 2017
179
24

Dll1+ secretory progenitor cells revert to stem cells upon crypt damage.
Johan H van Es, Toshiro Sato, Marc van de Wetering, Anna Lyubimova, Annie Ng Yee Nee, Alex Gregorieff, Nobuo Sasaki, Laura Zeinstra, Maaike van den Born, Jeroen Korving,[...]. Nat Cell Biol 2012
493
24

Parasitic helminths induce fetal-like reversion in the intestinal stem cell niche.
Ysbrand M Nusse, Adam K Savage, Pauline Marangoni, Axel K M Rosendahl-Huber, Tyler A Landman, Frederic J de Sauvage, Richard M Locksley, Ophir D Klein. Nature 2018
104
24

Intestinal label-retaining cells are secretory precursors expressing Lgr5.
Simon J A Buczacki, Heather Ireland Zecchini, Anna M Nicholson, Roslin Russell, Louis Vermeulen, Richard Kemp, Douglas J Winton. Nature 2013
505
23

Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells.
Unmesh Jadhav, Madhurima Saxena, Nicholas K O'Neill, Assieh Saadatpour, Guo-Cheng Yuan, Zachary Herbert, Kazutaka Murata, Ramesh A Shivdasani. Cell Stem Cell 2017
124
21

Subepithelial telocytes are an important source of Wnts that supports intestinal crypts.
Michal Shoshkes-Carmel, Yue J Wang, Kirk J Wangensteen, Beáta Tóth, Ayano Kondo, Efi E Massasa, Shalev Itzkovitz, Klaus H Kaestner. Nature 2018
210
21

Intestinal crypt homeostasis results from neutral competition between symmetrically dividing Lgr5 stem cells.
Hugo J Snippert, Laurens G van der Flier, Toshiro Sato, Johan H van Es, Maaike van den Born, Carla Kroon-Veenboer, Nick Barker, Allon M Klein, Jacco van Rheenen, Benjamin D Simons,[...]. Cell 2010
21

Paneth Cell Multipotency Induced by Notch Activation following Injury.
Shiyan Yu, Kevin Tong, Yanlin Zhao, Iyshwarya Balasubramanian, George S Yap, Ronaldo P Ferraris, Edward M Bonder, Michael P Verzi, Nan Gao. Cell Stem Cell 2018
112
21

The intestinal stem cell markers Bmi1 and Lgr5 identify two functionally distinct populations.
Kelley S Yan, Luis A Chia, Xingnan Li, Akifumi Ootani, James Su, Josephine Y Lee, Nan Su, Yuling Luo, Sarah C Heilshorn, Manuel R Amieva,[...]. Proc Natl Acad Sci U S A 2012
534
20

Bmi1 is expressed in vivo in intestinal stem cells.
Eugenio Sangiorgi, Mario R Capecchi. Nat Genet 2008
872
20

A single-cell survey of the small intestinal epithelium.
Adam L Haber, Moshe Biton, Noga Rogel, Rebecca H Herbst, Karthik Shekhar, Christopher Smillie, Grace Burgin, Toni M Delorey, Michael R Howitt, Yarden Katz,[...]. Nature 2017
589
20

Interconversion between intestinal stem cell populations in distinct niches.
Norifumi Takeda, Rajan Jain, Matthew R LeBoeuf, Qiaohong Wang, Min Min Lu, Jonathan A Epstein. Science 2011
490
19

Self-organization and symmetry breaking in intestinal organoid development.
Denise Serra, Urs Mayr, Andrea Boni, Ilya Lukonin, Markus Rempfler, Ludivine Challet Meylan, Michael B Stadler, Petr Strnad, Panagiotis Papasaikas, Dario Vischi,[...]. Nature 2019
160
19

Paneth Cells Respond to Inflammation and Contribute to Tissue Regeneration by Acquiring Stem-like Features through SCF/c-Kit Signaling.
Mark Schmitt, Matthias Schewe, Andrea Sacchetti, Danny Feijtel, Wesley S van de Geer, Miriam Teeuwssen, Hein F Sleddens, Rosalie Joosten, Martin E van Royen, Harmen J G van de Werken,[...]. Cell Rep 2018
95
17

The pan-ErbB negative regulator Lrig1 is an intestinal stem cell marker that functions as a tumor suppressor.
Anne E Powell, Yang Wang, Yina Li, Emily J Poulin, Anna L Means, Mary K Washington, James N Higginbotham, Alwin Juchheim, Nripesh Prasad, Shawn E Levy,[...]. Cell 2012
457
17

Mouse telomerase reverse transcriptase (mTert) expression marks slowly cycling intestinal stem cells.
Robert K Montgomery, Diana L Carlone, Camilla A Richmond, Loredana Farilla, Mariette E G Kranendonk, Daniel E Henderson, Nana Yaa Baffour-Awuah, Dana M Ambruzs, Laura K Fogli, Selma Algra,[...]. Proc Natl Acad Sci U S A 2011
362
17

Lgr5+ stem cells are indispensable for radiation-induced intestinal regeneration.
Ciara Metcalfe, Noelyn M Kljavin, Ryan Ybarra, Frederic J de Sauvage. Cell Stem Cell 2014
336
17

The Lgr5 intestinal stem cell signature: robust expression of proposed quiescent '+4' cell markers.
Javier Muñoz, Daniel E Stange, Arnout G Schepers, Marc van de Wetering, Bon-Kyoung Koo, Shalev Itzkovitz, Richard Volckmann, Kevin S Kung, Jan Koster, Sorina Radulescu,[...]. EMBO J 2012
487
16

Identification of Lgr5-independent spheroid-generating progenitors of the mouse fetal intestinal epithelium.
Roxana C Mustata, Gabriela Vasile, Valeria Fernandez-Vallone, Sandra Strollo, Anne Lefort, Frédérick Libert, Daniel Monteyne, David Pérez-Morga, Gilbert Vassart, Marie-Isabelle Garcia. Cell Rep 2013
122
16

GLI1-expressing mesenchymal cells form the essential Wnt-secreting niche for colon stem cells.
Bahar Degirmenci, Tomas Valenta, Slavica Dimitrieva, George Hausmann, Konrad Basler. Nature 2018
151
16

Distinct Mesenchymal Cell Populations Generate the Essential Intestinal BMP Signaling Gradient.
Neil McCarthy, Elisa Manieri, Elaine E Storm, Assieh Saadatpour, Adrienne M Luoma, Varun N Kapoor, Shariq Madha, Liam T Gaynor, Christian Cox, Shilpa Keerthivasan,[...]. Cell Stem Cell 2020
77
20

Phospho-regulation of ATOH1 Is Required for Plasticity of Secretory Progenitors and Tissue Regeneration.
Goran Tomic, Edward Morrissey, Sarah Kozar, Shani Ben-Moshe, Alice Hoyle, Roberta Azzarelli, Richard Kemp, Chandra Sekhar Reddy Chilamakuri, Shalev Itzkovitz, Anna Philpott,[...]. Cell Stem Cell 2018
45
33

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.
James Kinchen, Hannah H Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar,[...]. Cell 2018
201
15

PDGFRα+ pericryptal stromal cells are the critical source of Wnts and RSPO3 for murine intestinal stem cells in vivo.
Gediminas Greicius, Zahra Kabiri, Kristmundur Sigmundsson, Chao Liang, Ralph Bunte, Manvendra K Singh, David M Virshup. Proc Natl Acad Sci U S A 2018
134
15

Restriction of intestinal stem cell expansion and the regenerative response by YAP.
Evan R Barry, Teppei Morikawa, Brian L Butler, Kriti Shrestha, Rosemarie de la Rosa, Kelley S Yan, Charles S Fuchs, Scott T Magness, Ron Smits, Shuji Ogino,[...]. Nature 2013
372
14

A gp130-Src-YAP module links inflammation to epithelial regeneration.
Koji Taniguchi, Li-Wha Wu, Sergei I Grivennikov, Petrus R de Jong, Ian Lian, Fa-Xing Yu, Kepeng Wang, Samuel B Ho, Brigid S Boland, John T Chang,[...]. Nature 2015
378
14

Tales from the crypt: new insights into intestinal stem cells.
Helmuth Gehart, Hans Clevers. Nat Rev Gastroenterol Hepatol 2019
272
14

Redundant sources of Wnt regulate intestinal stem cells and promote formation of Paneth cells.
Henner F Farin, Johan H Van Es, Hans Clevers. Gastroenterology 2012
393
14

Paracrine orchestration of intestinal tumorigenesis by a mesenchymal niche.
Manolis Roulis, Aimilios Kaklamanos, Marina Schernthanner, Piotr Bielecki, Jun Zhao, Eleanna Kaffe, Laura-Sophie Frommelt, Rihao Qu, Marlene S Knapp, Ana Henriques,[...]. Nature 2020
86
16


Cellular Plasticity in Intestinal Homeostasis and Disease.
Felipe de Sousa E Melo, Frederic J de Sauvage. Cell Stem Cell 2019
64
20

CD34+ mesenchymal cells are a major component of the intestinal stem cells niche at homeostasis and after injury.
Igor Stzepourginski, Giulia Nigro, Jean-Marie Jacob, Sophie Dulauroy, Philippe J Sansonetti, Gérard Eberl, Lucie Peduto. Proc Natl Acad Sci U S A 2017
142
13

Long-Term Culture Captures Injury-Repair Cycles of Colonic Stem Cells.
Yi Wang, I-Ling Chiang, Takahiro E Ohara, Satoru Fujii, Jiye Cheng, Brian D Muegge, Aaron Ver Heul, Nathan D Han, Qiuhe Lu, Shanshan Xiong,[...]. Cell 2019
62
20

T Helper Cell Cytokines Modulate Intestinal Stem Cell Renewal and Differentiation.
Moshe Biton, Adam L Haber, Noga Rogel, Grace Burgin, Semir Beyaz, Alexandra Schnell, Orr Ashenberg, Chien-Wen Su, Christopher Smillie, Karthik Shekhar,[...]. Cell 2018
178
12

Wnt/beta-catenin is essential for intestinal homeostasis and maintenance of intestinal stem cells.
Tea Fevr, Sylvie Robine, Daniel Louvard, Joerg Huelsken. Mol Cell Biol 2007
410
12

Interleukin-22 promotes intestinal-stem-cell-mediated epithelial regeneration.
Caroline A Lindemans, Marco Calafiore, Anna M Mertelsmann, Margaret H O'Connor, Jarrod A Dudakov, Robert R Jenq, Enrico Velardi, Lauren F Young, Odette M Smith, Gillian Lawrence,[...]. Nature 2015
518
12

The Hippo signaling pathway restricts the oncogenic potential of an intestinal regeneration program.
Jing Cai, Nailing Zhang, Yonggang Zheng, Roeland F de Wilde, Anirban Maitra, Duojia Pan. Genes Dev 2010
344
12

De novo crypt formation and juvenile polyposis on BMP inhibition in mouse intestine.
Anna-Pavlina G Haramis, Harry Begthel, Maaike van den Born, Johan van Es, Suzanne Jonkheer, G Johan A Offerhaus, Hans Clevers. Science 2004
517
12

BMP signaling inhibits intestinal stem cell self-renewal through suppression of Wnt-beta-catenin signaling.
Xi C He, Jiwang Zhang, Wei-Gang Tong, Ossama Tawfik, Jason Ross, David H Scoville, Qiang Tian, Xin Zeng, Xi He, Leanne M Wiedemann,[...]. Nat Genet 2004
742
12

Intestinal stem cell replacement follows a pattern of neutral drift.
Carlos Lopez-Garcia, Allon M Klein, Benjamin D Simons, Douglas J Winton. Science 2010
419
12

Intestinal crypt homeostasis revealed at single-stem-cell level by in vivo live imaging.
Laila Ritsma, Saskia I J Ellenbroek, Anoek Zomer, Hugo J Snippert, Frederic J de Sauvage, Benjamin D Simons, Hans Clevers, Jacco van Rheenen. Nature 2014
301
12

Crypt stem cells as the cells-of-origin of intestinal cancer.
Nick Barker, Rachel A Ridgway, Johan H van Es, Marc van de Wetering, Harry Begthel, Maaike van den Born, Esther Danenberg, Alan R Clarke, Owen J Sansom, Hans Clevers. Nature 2009
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.