A citation-based method for searching scientific literature

Daniel Benjamin Callaghan, Sanja Rogic, Powell Patrick Cheng Tan, Kristina Calli, Ying Qiao, Robert Baldwin, Matthew Jacobson, Manuel Belmadani, Nathan Holmes, Chang Yu, Yanchen Li, Yingrui Li, Franz-Edward Kurtzke, Boris Kuzeljevic, An Yi Yu, Melissa Hudson, Amy J M Mcaughton, Yuchen Xu, Alexandre Dionne-Laporte, Simon Girard, Ping Liang, Evica Rajcan Separovic, Xudong Liu, Guy Rouleau, Paul Pavlidis, M E Suzanne Lewis. Clin Genet 2019
Times Cited: 8







List of co-cited articles
20 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Synaptic, transcriptional and chromatin genes disrupted in autism.
Silvia De Rubeis, Xin He, Arthur P Goldberg, Christopher S Poultney, Kaitlin Samocha, A Erucment Cicek, Yan Kou, Li Liu, Menachem Fromer, Susan Walker,[...]. Nature 2014
50

SFARI Gene 2.0: a community-driven knowledgebase for the autism spectrum disorders (ASDs).
Brett S Abrahams, Dan E Arking, Daniel B Campbell, Heather C Mefford, Eric M Morrow, Lauren A Weiss, Idan Menashe, Tim Wadkins, Sharmila Banerjee-Basu, Alan Packer. Mol Autism 2013
250
37


A general framework for estimating the relative pathogenicity of human genetic variants.
Martin Kircher, Daniela M Witten, Preti Jain, Brian J O'Roak, Gregory M Cooper, Jay Shendure. Nat Genet 2014
25

The contribution of de novo coding mutations to autism spectrum disorder.
Ivan Iossifov, Brian J O'Roak, Stephan J Sanders, Michael Ronemus, Niklas Krumm, Dan Levy, Holly A Stessman, Kali T Witherspoon, Laura Vives, Karynne E Patterson,[...]. Nature 2014
25

Multiplex targeted sequencing identifies recurrently mutated genes in autism spectrum disorders.
Brian J O'Roak, Laura Vives, Wenqing Fu, Jarrett D Egertson, Ian B Stanaway, Ian G Phelps, Gemma Carvill, Akash Kumar, Choli Lee, Katy Ankenman,[...]. Science 2012
773
25

Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism.
F Kyle Satterstrom, Jack A Kosmicki, Jiebiao Wang, Michael S Breen, Silvia De Rubeis, Joon-Yong An, Minshi Peng, Ryan Collins, Jakob Grove, Lambertus Klei,[...]. Cell 2020
310
25

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads.
Mihaela Pertea, Geo M Pertea, Corina M Antonescu, Tsung-Cheng Chang, Joshua T Mendell, Steven L Salzberg. Nat Biotechnol 2015
25

HISAT: a fast spliced aligner with low memory requirements.
Daehwan Kim, Ben Langmead, Steven L Salzberg. Nat Methods 2015
25

Insights into Autism Spectrum Disorder Genomic Architecture and Biology from 71 Risk Loci.
Stephan J Sanders, Xin He, A Jeremy Willsey, A Gulhan Ercan-Sencicek, Kaitlin E Samocha, A Ercument Cicek, Michael T Murtha, Vanessa H Bal, Somer L Bishop, Shan Dong,[...]. Neuron 2015
601
25

Whole-genome deep-learning analysis identifies contribution of noncoding mutations to autism risk.
Jian Zhou, Christopher Y Park, Chandra L Theesfeld, Aaron K Wong, Yuan Yuan, Claudia Scheckel, John J Fak, Julien Funk, Kevin Yao, Yoko Tajima,[...]. Nat Genet 2019
72
25

Genome-wide association study identifies 30 loci associated with bipolar disorder.
Eli A Stahl, Gerome Breen, Andreas J Forstner, Andrew McQuillin, Stephan Ripke, Vassily Trubetskoy, Manuel Mattheisen, Yunpeng Wang, Jonathan R I Coleman, Héléna A Gaspar,[...]. Nat Genet 2019
408
25

Transcriptomic analysis of autistic brain reveals convergent molecular pathology.
Irina Voineagu, Xinchen Wang, Patrick Johnston, Jennifer K Lowe, Yuan Tian, Steve Horvath, Jonathan Mill, Rita M Cantor, Benjamin J Blencowe, Daniel H Geschwind. Nature 2011
25

Mapping autism risk loci using genetic linkage and chromosomal rearrangements.
Peter Szatmari, Andrew D Paterson, Lonnie Zwaigenbaum, Wendy Roberts, Jessica Brian, Xiao-Qing Liu, John B Vincent, Jennifer L Skaug, Ann P Thompson, Lili Senman,[...]. Nat Genet 2007
948
25

Epigenetics and Autism Spectrum Disorder: Is There a Correlation?
Adrien A Eshraghi, George Liu, Sae-In Samantha Kay, Rebecca S Eshraghi, Jeenu Mittal, Baharak Moshiree, Rahul Mittal. Front Cell Neurosci 2018
19
25

Transcriptome analysis reveals dysregulation of innate immune response genes and neuronal activity-dependent genes in autism.
Simone Gupta, Shannon E Ellis, Foram N Ashar, Anna Moes, Joel S Bader, Jianan Zhan, Andrew B West, Dan E Arking. Nat Commun 2014
247
25

Genetic diagnosis of developmental disorders in the DDD study: a scalable analysis of genome-wide research data.
Caroline F Wright, Tomas W Fitzgerald, Wendy D Jones, Stephen Clayton, Jeremy F McRae, Margriet van Kogelenberg, Daniel A King, Kirsty Ambridge, Daniel M Barrett, Tanya Bayzetinova,[...]. Lancet 2015
363
25

Genome-wide de novo risk score implicates promoter variation in autism spectrum disorder.
Joon-Yong An, Kevin Lin, Lingxue Zhu, Donna M Werling, Shan Dong, Harrison Brand, Harold Z Wang, Xuefang Zhao, Grace B Schwartz, Ryan L Collins,[...]. Science 2018
79
25

Identification of common genetic risk variants for autism spectrum disorder.
Jakob Grove, Stephan Ripke, Thomas D Als, Manuel Mattheisen, Raymond K Walters, Hyejung Won, Jonatan Pallesen, Esben Agerbo, Ole A Andreassen, Richard Anney,[...]. Nat Genet 2019
437
25

Whole genome sequencing resource identifies 18 new candidate genes for autism spectrum disorder.
Ryan K C Yuen, Daniele Merico, Matt Bookman, Jennifer L Howe, Bhooma Thiruvahindrapuram, Rohan V Patel, Joe Whitney, Nicole Deflaux, Jonathan Bingham, Zhuozhi Wang,[...]. Nat Neurosci 2017
332
25

Dynamics and structural stability effects of germline PTEN mutations associated with cancer versus autism phenotypes.
Iris Nira Smith, Stetson Thacker, Ritika Jaini, Charis Eng. J Biomol Struct Dyn 2019
17
12


Regulation of Fab1 phosphatidylinositol 3-phosphate 5-kinase pathway by Vac7 protein and Fig4, a polyphosphoinositide phosphatase family member.
Jonathan D Gary, Trey K Sato, Christopher J Stefan, Cecilia J Bonangelino, Lois S Weisman, Scott D Emr. Mol Biol Cell 2002
123
12

A cycle of Vam7p release from and PtdIns 3-P-dependent rebinding to the yeast vacuole is required for homotypic vacuole fusion.
Christine Boeddinghaus, Alexey J Merz, Ricco Laage, Christian Ungermann. J Cell Biol 2002
83
12

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data.
Kai Wang, Mingyao Li, Hakon Hakonarson. Nucleic Acids Res 2010
12



Reversal of salt preference is directed by the insulin/PI3K and Gq/PKC signaling in Caenorhabditis elegans.
Takeshi Adachi, Hirofumi Kunitomo, Masahiro Tomioka, Hayao Ohno, Yoshifumi Okochi, Ikue Mori, Yuichi Iino. Genetics 2010
35
12

Phosphorylation of the PTEN tail acts as an inhibitory switch by preventing its recruitment into a protein complex.
F Vazquez, S R Grossman, Y Takahashi, M V Rokas, N Nakamura, W R Sellers. J Biol Chem 2001
323
12

Nuclear Excluded Autism-Associated Phosphatase and Tensin Homolog Mutations Dysregulate Neuronal Growth.
Catherine J Fricano-Kugler, Stephanie A Getz, Michael R Williams, Ashley A Zurawel, Tyrone DeSpenza, Paul W Frazel, Meijie Li, Alistair J O'Malley, Erika L Moen, Bryan W Luikart. Biol Psychiatry 2018
11
12

Hyperactivity of newborn Pten knock-out neurons results from increased excitatory synaptic drive.
Michael R Williams, Tyrone DeSpenza, Meijie Li, Allan T Gulledge, Bryan W Luikart. J Neurosci 2015
62
12

PTEN functions by recruitment to cytoplasmic vesicles.
Adam Naguib, Gyula Bencze, Hyejin Cho, Wu Zheng, Ante Tocilj, Elad Elkayam, Christopher R Faehnle, Nadia Jaber, Christopher P Pratt, Muhan Chen,[...]. Mol Cell 2015
53
12

The biology and clinical relevance of the PTEN tumor suppressor pathway.
Isabelle Sansal, William R Sellers. J Clin Oncol 2004
702
12

COSMIC: the Catalogue Of Somatic Mutations In Cancer.
John G Tate, Sally Bamford, Harry C Jubb, Zbyslaw Sondka, David M Beare, Nidhi Bindal, Harry Boutselakis, Charlotte G Cole, Celestino Creatore, Elisabeth Dawson,[...]. Nucleic Acids Res 2019
934
12


Phosphorylation keeps PTEN phosphatase closed for business.
Alonzo H Ross, Arne Gericke. Proc Natl Acad Sci U S A 2009
62
12

The ExAC browser: displaying reference data information from over 60 000 exomes.
Konrad J Karczewski, Ben Weisburd, Brett Thomas, Matthew Solomonson, Douglas M Ruderfer, David Kavanagh, Tymor Hamamsy, Monkol Lek, Kaitlin E Samocha, Beryl B Cummings,[...]. Nucleic Acids Res 2017
264
12


Better prediction of functional effects for sequence variants.
Maximilian Hecht, Yana Bromberg, Burkhard Rost. BMC Genomics 2015
195
12

Suppression of cellular proliferation and invasion by the concerted lipid and protein phosphatase activities of PTEN.
L Davidson, H Maccario, N M Perera, X Yang, L Spinelli, P Tibarewal, B Glancy, A Gray, C J Weijer, C P Downes,[...]. Oncogene 2010
91
12


High-throughput behavioral analysis in C. elegans.
Nicholas A Swierczek, Andrew C Giles, Catharine H Rankin, Rex A Kerr. Nat Methods 2011
200
12


Cancer-associated PTEN mutants act in a dominant-negative manner to suppress PTEN protein function.
Antonella Papa, Lixin Wan, Massimo Bonora, Leonardo Salmena, Min Sup Song, Robin M Hobbs, Andrea Lunardi, Kaitlyn Webster, Christopher Ng, Ryan H Newton,[...]. Cell 2014
165
12

A high-sugar diet produces obesity and insulin resistance in wild-type Drosophila.
Laura Palanker Musselman, Jill L Fink, Kirk Narzinski, Prasanna Venkatesh Ramachandran, Sumitha Sukumar Hathiramani, Ross L Cagan, Thomas J Baranski. Dis Model Mech 2011
252
12


Sensory processing in autism spectrum disorders and Fragile X syndrome-From the clinic to animal models.
D Sinclair, B Oranje, K A Razak, S J Siegel, S Schmid. Neurosci Biobehav Rev 2017
61
12

Discovery and functional characterization of a neomorphic PTEN mutation.
Helio A Costa, Michael G Leitner, Martin L Sos, Angeliki Mavrantoni, Anna Rychkova, Jeffrey R Johnson, Billy W Newton, Muh-Ching Yee, Francisco M De La Vega, James M Ford,[...]. Proc Natl Acad Sci U S A 2015
25
12

Yeast homotypic vacuole fusion requires the Ccz1-Mon1 complex during the tethering/docking stage.
Chao-Wen Wang, Per E Stromhaug, Emily J Kauffman, Lois S Weisman, Daniel J Klionsky. J Cell Biol 2003
86
12



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.