A citation-based method for searching scientific literature

David Trombley McSwiggen, Anders S Hansen, Sheila S Teves, Hervé Marie-Nelly, Yvonne Hao, Alec Basil Heckert, Kayla K Umemoto, Claire Dugast-Darzacq, Robert Tjian, Xavier Darzacq. Elife 2019
Times Cited: 108







List of co-cited articles
1496 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
52

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
853
47

Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences.
David T McSwiggen, Mustafa Mir, Xavier Darzacq, Robert Tjian. Genes Dev 2019
206
47

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
515
41

Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
565
39

Imaging dynamic and selective low-complexity domain interactions that control gene transcription.
Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq,[...]. Science 2018
391
38

Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
761
35

Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
809
34

A Phase Separation Model for Transcriptional Control.
Denes Hnisz, Krishna Shrinivas, Richard A Young, Arup K Chakraborty, Phillip A Sharp. Cell 2017
746
33

Liquid-liquid phase separation in biology.
Anthony A Hyman, Christoph A Weber, Frank Jülicher. Annu Rev Cell Dev Biol 2014
33


Liquid phase condensation in cell physiology and disease.
Yongdae Shin, Clifford P Brangwynne. Science 2017
32

Coexisting Liquid Phases Underlie Nucleolar Subcompartments.
Marina Feric, Nilesh Vaidya, Tyler S Harmon, Diana M Mitrea, Lian Zhu, Tiffany M Richardson, Richard W Kriwacki, Rohit V Pappu, Clifford P Brangwynne. Cell 2016
763
28

Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.
Yang Eric Guo, John C Manteiga, Jonathan E Henninger, Benjamin R Sabari, Alessandra Dall'Agnese, Nancy M Hannett, Jan-Hendrik Spille, Lena K Afeyan, Alicia V Zamudio, Krishna Shrinivas,[...]. Nature 2019
219
28

Germline P granules are liquid droplets that localize by controlled dissolution/condensation.
Clifford P Brangwynne, Christian R Eckmann, David S Courson, Agata Rybarska, Carsten Hoege, Jöbin Gharakhani, Frank Jülicher, Anthony A Hyman. Science 2009
25

RNA polymerase II clustering through carboxy-terminal domain phase separation.
Marc Boehning, Claire Dugast-Darzacq, Marija Rankovic, Anders S Hansen, Taekyung Yu, Herve Marie-Nelly, David T McSwiggen, Goran Kokic, Gina M Dailey, Patrick Cramer,[...]. Nat Struct Mol Biol 2018
253
23

A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.
Avinash Patel, Hyun O Lee, Louise Jawerth, Shovamayee Maharana, Marcus Jahnel, Marco Y Hein, Stoyno Stoynov, Julia Mahamid, Shambaditya Saha, Titus M Franzmann,[...]. Cell 2015
22

Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes.
Clifford P Brangwynne, Timothy J Mitchison, Anthony A Hyman. Proc Natl Acad Sci U S A 2011
618
22

Phase transitions in the assembly of multivalent signalling proteins.
Pilong Li, Sudeep Banjade, Hui-Chun Cheng, Soyeon Kim, Baoyu Chen, Liang Guo, Marc Llaguno, Javoris V Hollingsworth, David S King, Salman F Banani,[...]. Nature 2012
22

Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation.
Fabian Erdel, Anne Rademacher, Rifka Vlijm, Jana Tünnermann, Lukas Frank, Robin Weinmann, Elisabeth Schweigert, Klaus Yserentant, Johan Hummert, Caroline Bauer,[...]. Mol Cell 2020
94
22

Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II.
Huasong Lu, Dan Yu, Anders S Hansen, Sourav Ganguly, Rongdiao Liu, Alec Heckert, Xavier Darzacq, Qiang Zhou. Nature 2018
244
20

Organization of Chromatin by Intrinsic and Regulated Phase Separation.
Bryan A Gibson, Lynda K Doolittle, Maximillian W G Schneider, Liv E Jensen, Nathan Gamarra, Lisa Henry, Daniel W Gerlich, Sy Redding, Michael K Rosen. Cell 2019
320
20

A Molecular Grammar Governing the Driving Forces for Phase Separation of Prion-like RNA Binding Proteins.
Jie Wang, Jeong-Mo Choi, Alex S Holehouse, Hyun O Lee, Xiaojie Zhang, Marcus Jahnel, Shovamayee Maharana, Régis Lemaitre, Andrei Pozniakovsky, David Drechsel,[...]. Cell 2018
610
20

Mediator Condensates Localize Signaling Factors to Key Cell Identity Genes.
Alicia V Zamudio, Alessandra Dall'Agnese, Jonathan E Henninger, John C Manteiga, Lena K Afeyan, Nancy M Hannett, Eliot L Coffey, Charles H Li, Ozgur Oksuz, Benjamin R Sabari,[...]. Mol Cell 2019
77
24

Formation of Chromatin Subcompartments by Phase Separation.
Fabian Erdel, Karsten Rippe. Biophys J 2018
153
19

Protein Phase Separation: A New Phase in Cell Biology.
Steven Boeynaems, Simon Alberti, Nicolas L Fawzi, Tanja Mittag, Magdalini Polymenidou, Frederic Rousseau, Joost Schymkowitz, James Shorter, Benjamin Wolozin, Ludo Van Den Bosch,[...]. Trends Cell Biol 2018
748
18

Nucleated transcriptional condensates amplify gene expression.
Ming-Tzo Wei, Yi-Che Chang, Shunsuke F Shimobayashi, Yongdae Shin, Amy R Strom, Clifford P Brangwynne. Nat Cell Biol 2020
57
29

Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome.
Yongdae Shin, Yi-Che Chang, Daniel S W Lee, Joel Berry, David W Sanders, Pierre Ronceray, Ned S Wingreen, Mikko Haataja, Clifford P Brangwynne. Cell 2018
247
16


Compositional Control of Phase-Separated Cellular Bodies.
Salman F Banani, Allyson M Rice, William B Peeples, Yuan Lin, Saumya Jain, Roy Parker, Michael K Rosen. Cell 2016
478
16

Phosphorylation-regulated binding of RNA polymerase II to fibrous polymers of low-complexity domains.
Ilmin Kwon, Masato Kato, Siheng Xiang, Leeju Wu, Pano Theodoropoulos, Hamid Mirzaei, Tina Han, Shanhai Xie, Jeffry L Corden, Steven L McKnight. Cell 2013
332
15

Single-molecule dynamics of enhanceosome assembly in embryonic stem cells.
Jiji Chen, Zhengjian Zhang, Li Li, Bi-Chang Chen, Andrey Revyakin, Bassam Hajj, Wesley Legant, Maxime Dahan, Timothée Lionnet, Eric Betzig,[...]. Cell 2014
345
15

Histone Modifications Regulate Chromatin Compartmentalization by Contributing to a Phase Separation Mechanism.
Liang Wang, Yifei Gao, Xiangdong Zheng, Cuifang Liu, Shuangshuang Dong, Ru Li, Guanwei Zhang, Yixuan Wei, Hongyuan Qu, Yuhan Li,[...]. Mol Cell 2019
117
15

HP1 reshapes nucleosome core to promote phase separation of heterochromatin.
S Sanulli, M J Trnka, V Dharmarajan, R W Tibble, B D Pascal, A L Burlingame, P R Griffin, J D Gross, G J Narlikar. Nature 2019
172
15

Composition-dependent thermodynamics of intracellular phase separation.
Joshua A Riback, Lian Zhu, Mylene C Ferrolino, Michele Tolbert, Diana M Mitrea, David W Sanders, Ming-Tzo Wei, Richard W Kriwacki, Clifford P Brangwynne. Nature 2020
153
15

Single-molecule tracking in live cells reveals distinct target-search strategies of transcription factors in the nucleus.
Ignacio Izeddin, Vincent Récamier, Lana Bosanac, Ibrahim I Cissé, Lydia Boudarene, Claire Dugast-Darzacq, Florence Proux, Olivier Bénichou, Raphaël Voituriez, Olivier Bensaude,[...]. Elife 2014
174
13

Enhancer Features that Drive Formation of Transcriptional Condensates.
Krishna Shrinivas, Benjamin R Sabari, Eliot L Coffey, Isaac A Klein, Ann Boija, Alicia V Zamudio, Jurian Schuijers, Nancy M Hannett, Phillip A Sharp, Richard A Young,[...]. Mol Cell 2019
129
13

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
13

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
13

Phase Transitions Drive the Formation of Vesicular Stomatitis Virus Replication Compartments.
Bianca S Heinrich, Zoltan Maliga, David A Stein, Anthony A Hyman, Sean P J Whelan. mBio 2018
94
13

Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.
Roubina Tatavosian, Samantha Kent, Kyle Brown, Tingting Yao, Huy Nguyen Duc, Thao Ngoc Huynh, Chao Yu Zhen, Brian Ma, Haobin Wang, Xiaojun Ren. J Biol Chem 2019
143
13

Phase separation by low complexity domains promotes stress granule assembly and drives pathological fibrillization.
Amandine Molliex, Jamshid Temirov, Jihun Lee, Maura Coughlin, Anderson P Kanagaraj, Hong Joo Kim, Tanja Mittag, J Paul Taylor. Cell 2015
13

Cell-free formation of RNA granules: low complexity sequence domains form dynamic fibers within hydrogels.
Masato Kato, Tina W Han, Shanhai Xie, Kevin Shi, Xinlin Du, Leeju C Wu, Hamid Mirzaei, Elizabeth J Goldsmith, Jamie Longgood, Jimin Pei,[...]. Cell 2012
13

Liquid demixing of intrinsically disordered proteins is seeded by poly(ADP-ribose).
Matthias Altmeyer, Kai J Neelsen, Federico Teloni, Irina Pozdnyakova, Stefania Pellegrino, Merete Grøfte, Maj-Britt Druedahl Rask, Werner Streicher, Stephanie Jungmichel, Michael Lund Nielsen,[...]. Nat Commun 2015
308
13

RNA Polymerase II cluster dynamics predict mRNA output in living cells.
Won-Ki Cho, Namrata Jayanth, Brian P English, Takuma Inoue, J Owen Andrews, William Conway, Jonathan B Grimm, Jan-Hendrik Spille, Luke D Lavis, Timothée Lionnet,[...]. Elife 2016
133
13

Real-time dynamics of RNA polymerase II clustering in live human cells.
Ibrahim I Cisse, Ignacio Izeddin, Sebastien Z Causse, Lydia Boudarene, Adrien Senecal, Leila Muresan, Claire Dugast-Darzacq, Bassam Hajj, Maxime Dahan, Xavier Darzacq. Science 2013
256
13

Robust model-based analysis of single-particle tracking experiments with Spot-On.
Anders S Hansen, Maxime Woringer, Jonathan B Grimm, Luke D Lavis, Robert Tjian, Xavier Darzacq. Elife 2018
80
15

Dynamic multifactor hubs interact transiently with sites of active transcription in Drosophila embryos.
Mustafa Mir, Michael R Stadler, Stephan A Ortiz, Colleen E Hannon, Melissa M Harrison, Xavier Darzacq, Michael B Eisen. Elife 2018
73
16

Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
12

Spatiotemporal Control of Intracellular Phase Transitions Using Light-Activated optoDroplets.
Yongdae Shin, Joel Berry, Nicole Pannucci, Mikko P Haataja, Jared E Toettcher, Clifford P Brangwynne. Cell 2017
327
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.