A citation-based method for searching scientific literature

Qianhua Xu, Yunlong Xiang, Qiujun Wang, Leyun Wang, Julie Brind'Amour, Aaron Blair Bogutz, Yu Zhang, Bingjie Zhang, Guang Yu, Weikun Xia, Zhenhai Du, Chunyi Huang, Jing Ma, Hui Zheng, Yuanyuan Li, Chao Liu, Cheryl Lyn Walker, Eric Jonasch, Louis Lefebvre, Min Wu, Matthew C Lorincz, Wei Li, Li Li, Wei Xie. Nat Genet 2019
Times Cited: 64







List of co-cited articles
819 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Allelic reprogramming of the histone modification H3K4me3 in early mammalian development.
Bingjie Zhang, Hui Zheng, Bo Huang, Wenzhi Li, Yunlong Xiang, Xu Peng, Jia Ming, Xiaotong Wu, Yu Zhang, Qianhua Xu,[...]. Nature 2016
258
31

Dnmt3L and the establishment of maternal genomic imprints.
D Bourc'his, G L Xu, C S Lin, B Bollman, T H Bestor. Science 2001
903
29

Dynamic changes in histone modifications precede de novo DNA methylation in oocytes.
Kathleen R Stewart, Lenka Veselovska, Jeesun Kim, Jiahao Huang, Heba Saadeh, Shin-ichi Tomizawa, Sébastien A Smallwood, Taiping Chen, Gavin Kelsey. Genes Dev 2015
103
29

Broad histone H3K4me3 domains in mouse oocytes modulate maternal-to-zygotic transition.
John Arne Dahl, Inkyung Jung, Håvard Aanes, Gareth D Greggains, Adeel Manaf, Mads Lerdrup, Guoqiang Li, Samantha Kuan, Bin Li, Ah Young Lee,[...]. Nature 2016
244
29

Resetting Epigenetic Memory by Reprogramming of Histone Modifications in Mammals.
Hui Zheng, Bo Huang, Bingjie Zhang, Yunlong Xiang, Zhenhai Du, Qianhua Xu, Yuanyuan Li, Qiujun Wang, Jing Ma, Xu Peng,[...]. Mol Cell 2016
149
28

Deep sequencing and de novo assembly of the mouse oocyte transcriptome define the contribution of transcription to the DNA methylation landscape.
Lenka Veselovska, Sebastien A Smallwood, Heba Saadeh, Kathleen R Stewart, Felix Krueger, Stéphanie Maupetit-Méhouas, Philippe Arnaud, Shin-Ichi Tomizawa, Simon Andrews, Gavin Kelsey. Genome Biol 2015
100
26

MLL2 conveys transcription-independent H3K4 trimethylation in oocytes.
Courtney W Hanna, Aaron Taudt, Jiahao Huang, Lenka Gahurova, Andrea Kranz, Simon Andrews, Wendy Dean, A Francis Stewart, Maria Colomé-Tatché, Gavin Kelsey. Nat Struct Mol Biol 2018
65
26

Maternal H3K27me3 controls DNA methylation-independent imprinting.
Azusa Inoue, Lan Jiang, Falong Lu, Tsukasa Suzuki, Yi Zhang. Nature 2017
163
26

Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Tuncay Baubec, Daniele F Colombo, Christiane Wirbelauer, Juliane Schmidt, Lukas Burger, Arnaud R Krebs, Altuna Akalin, Dirk Schübeler. Nature 2015
336
25

LTR retrotransposons transcribed in oocytes drive species-specific and heritable changes in DNA methylation.
Julie Brind'Amour, Hisato Kobayashi, Julien Richard Albert, Kenjiro Shirane, Akihiko Sakashita, Asuka Kamio, Aaron Bogutz, Tasuku Koike, Mohammad M Karimi, Louis Lefebvre,[...]. Nat Commun 2018
32
46

Contribution of intragenic DNA methylation in mouse gametic DNA methylomes to establish oocyte-specific heritable marks.
Hisato Kobayashi, Takayuki Sakurai, Misaki Imai, Nozomi Takahashi, Atsushi Fukuda, Obata Yayoi, Shun Sato, Kazuhiko Nakabayashi, Kenichiro Hata, Yusuke Sotomaru,[...]. PLoS Genet 2012
318
21

The histone mark H3K36me2 recruits DNMT3A and shapes the intergenic DNA methylation landscape.
Daniel N Weinberg, Simon Papillon-Cavanagh, Haifen Chen, Yuan Yue, Xiao Chen, Kartik N Rajagopalan, Cynthia Horth, John T McGuire, Xinjing Xu, Hamid Nikbakht,[...]. Nature 2019
99
21

Mouse oocyte methylomes at base resolution reveal genome-wide accumulation of non-CpG methylation and role of DNA methyltransferases.
Kenjiro Shirane, Hidehiro Toh, Hisato Kobayashi, Fumihito Miura, Hatsune Chiba, Takashi Ito, Tomohiro Kono, Hiroyuki Sasaki. PLoS Genet 2013
171
21

Essential role for de novo DNA methyltransferase Dnmt3a in paternal and maternal imprinting.
Masahiro Kaneda, Masaki Okano, Kenichiro Hata, Takashi Sado, Naomi Tsujimoto, En Li, Hiroyuki Sasaki. Nature 2004
867
21

Transcription is required for establishment of germline methylation marks at imprinted genes.
Mita Chotalia, Sebastien A Smallwood, Nico Ruf, Claire Dawson, Diana Lucifero, Marga Frontera, Katherine James, Wendy Dean, Gavin Kelsey. Genes Dev 2009
212
20

The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.
Arunkumar Dhayalan, Arumugam Rajavelu, Philipp Rathert, Raluca Tamas, Renata Z Jurkowska, Sergey Ragozin, Albert Jeltsch. J Biol Chem 2010
309
20

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Steen K T Ooi, Chen Qiu, Emily Bernstein, Keqin Li, Da Jia, Zhe Yang, Hediye Erdjument-Bromage, Paul Tempst, Shau-Ping Lin, C David Allis,[...]. Nature 2007
952
20

Resetting histone modifications during human parental-to-zygotic transition.
Weikun Xia, Jiawei Xu, Guang Yu, Guidong Yao, Kai Xu, Xueshan Ma, Nan Zhang, Bofeng Liu, Tong Li, Zili Lin,[...]. Science 2019
50
26

Dynamic CpG island methylation landscape in oocytes and preimplantation embryos.
Sébastien A Smallwood, Shin-Ichi Tomizawa, Felix Krueger, Nico Ruf, Natasha Carli, Anne Segonds-Pichon, Shun Sato, Kenichiro Hata, Simon R Andrews, Gavin Kelsey. Nat Genet 2011
418
18

Stella safeguards the oocyte methylome by preventing de novo methylation mediated by DNMT1.
Yingfeng Li, Zhuqiang Zhang, Jiayu Chen, Wenqiang Liu, Weiyi Lai, Baodong Liu, Xiang Li, Liping Liu, Shaohua Xu, Qiang Dong,[...]. Nature 2018
76
18

Histone H3K9 Methyltransferase G9a in Oocytes Is Essential for Preimplantation Development but Dispensable for CG Methylation Protection.
Wan Kin Au Yeung, Julie Brind'Amour, Yu Hatano, Kazuo Yamagata, Robert Feil, Matthew C Lorincz, Makoto Tachibana, Yoichi Shinkai, Hiroyuki Sasaki. Cell Rep 2019
25
48

Reprogramming of H3K9me3-dependent heterochromatin during mammalian embryo development.
Chenfei Wang, Xiaoyu Liu, Yawei Gao, Lei Yang, Chong Li, Wenqiang Liu, Chuan Chen, Xiaochen Kou, Yanhong Zhao, Jiayu Chen,[...]. Nat Cell Biol 2018
107
18


The histone mark H3K36me3 regulates human DNA mismatch repair through its interaction with MutSα.
Feng Li, Guogen Mao, Dan Tong, Jian Huang, Liya Gu, Wei Yang, Guo-Min Li. Cell 2013
338
17

Genome-wide analysis of DNA methylation dynamics during early human development.
Hiroaki Okae, Hatsune Chiba, Hitoshi Hiura, Hirotaka Hamada, Akiko Sato, Takafumi Utsunomiya, Hiroyuki Kikuchi, Hiroaki Yoshida, Atsushi Tanaka, Mikita Suyama,[...]. PLoS Genet 2014
140
15

Programming and inheritance of parental DNA methylomes in mammals.
Lu Wang, Jun Zhang, Jialei Duan, Xinxing Gao, Wei Zhu, Xingyu Lu, Lu Yang, Jing Zhang, Guoqiang Li, Weimin Ci,[...]. Cell 2014
277
15

In embryonic stem cells, ZFP57/KAP1 recognize a methylated hexanucleotide to affect chromatin and DNA methylation of imprinting control regions.
Simon Quenneville, Gaetano Verde, Andrea Corsinotti, Adamandia Kapopoulou, Johan Jakobsson, Sandra Offner, Ilaria Baglivo, Paolo V Pedone, Giovanna Grimaldi, Andrea Riccio,[...]. Mol Cell 2011
349
15

Intragenic DNA methylation prevents spurious transcription initiation.
Francesco Neri, Stefania Rapelli, Anna Krepelova, Danny Incarnato, Caterina Parlato, Giulia Basile, Mara Maldotti, Francesca Anselmi, Salvatore Oliviero. Nature 2017
269
15

Dual Chromatin and Cytoskeletal Remodeling by SETD2.
In Young Park, Reid T Powell, Durga Nand Tripathi, Ruhee Dere, Thai H Ho, T Lynne Blasius, Yun-Chen Chiang, Ian J Davis, Catherine C Fahey, Kathryn E Hacker,[...]. Cell 2016
101
15

Dynamics of the epigenetic landscape during the maternal-to-zygotic transition.
Melanie A Eckersley-Maslin, Celia Alda-Catalinas, Wolf Reik. Nat Rev Mol Cell Biol 2018
108
15

Histone H3 lysine 36 methyltransferase Hypb/Setd2 is required for embryonic vascular remodeling.
Ming Hu, Xiao-Jian Sun, Yuan-Liang Zhang, Ying Kuang, Chao-Quan Hu, Wei-Li Wu, Shu-Hong Shen, Ting-Ting Du, Hong Li, Fei He,[...]. Proc Natl Acad Sci U S A 2010
88
15

Genomic imprinting of Xist by maternal H3K27me3.
Azusa Inoue, Lan Jiang, Falong Lu, Yi Zhang. Genes Dev 2017
58
17


Allelic H3K27me3 to allelic DNA methylation switch maintains noncanonical imprinting in extraembryonic cells.
Zhiyuan Chen, Qiangzong Yin, Azusa Inoue, Chunxia Zhang, Yi Zhang. Sci Adv 2019
22
45

Polycomb Group Proteins Regulate Chromatin Architecture in Mouse Oocytes and Early Embryos.
Zhenhai Du, Hui Zheng, Yumiko K Kawamura, Ke Zhang, Johanna Gassler, Sean Powell, Qianhua Xu, Zili Lin, Kai Xu, Qian Zhou,[...]. Mol Cell 2020
28
35

A DNMT3A PWWP mutation leads to methylation of bivalent chromatin and growth retardation in mice.
Gintarė Sendžikaitė, Courtney W Hanna, Kathleen R Stewart-Morgan, Elena Ivanova, Gavin Kelsey. Nat Commun 2019
34
26

Gain-of-function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions.
Patricia Heyn, Clare V Logan, Adeline Fluteau, Rachel C Challis, Tatsiana Auchynnikava, Carol-Anne Martin, Joseph A Marsh, Francesca Taglini, Fiona Kilanowski, David A Parry,[...]. Nat Genet 2019
47
19

Single-cell DNA methylome sequencing of human preimplantation embryos.
Ping Zhu, Hongshan Guo, Yixin Ren, Yu Hou, Ji Dong, Rong Li, Ying Lian, Xiaoying Fan, Boqiang Hu, Yun Gao,[...]. Nat Genet 2018
111
14

The DNA methyltransferase DNMT3C protects male germ cells from transposon activity.
Joan Barau, Aurélie Teissandier, Natasha Zamudio, Stéphanie Roy, Valérie Nalesso, Yann Hérault, Florian Guillou, Déborah Bourc'his. Science 2016
141
14

Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.
Anne E Peaston, Alexei V Evsikov, Joel H Graber, Wilhelmine N de Vries, Andrea E Holbrook, Davor Solter, Barbara B Knowles. Dev Cell 2004
404
14

A maternal-zygotic effect gene, Zfp57, maintains both maternal and paternal imprints.
Xiajun Li, Mitsuteru Ito, Fen Zhou, Neil Youngson, Xiaopan Zuo, Philip Leder, Anne C Ferguson-Smith. Dev Cell 2008
393
14


Methyltransferase SETD2-Mediated Methylation of STAT1 Is Critical for Interferon Antiviral Activity.
Kun Chen, Juan Liu, Shuxun Liu, Meng Xia, Xiaomin Zhang, Dan Han, Yingming Jiang, Chunmei Wang, Xuetao Cao. Cell 2017
115
14

MLL2 is required in oocytes for bulk histone 3 lysine 4 trimethylation and transcriptional silencing.
Claudia V Andreu-Vieyra, Ruihong Chen, Julio E Agno, Stefan Glaser, Konstantinos Anastassiadis, A Francis Stewart, Martin M Matzuk. PLoS Biol 2010
157
14


Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
12

The dynamics of genome-wide DNA methylation reprogramming in mouse primordial germ cells.
Stefanie Seisenberger, Simon Andrews, Felix Krueger, Julia Arand, Jörn Walter, Fátima Santos, Christian Popp, Bernard Thienpont, Wendy Dean, Wolf Reik. Mol Cell 2012
543
12

DNA methylation dynamics of the human preimplantation embryo.
Zachary D Smith, Michelle M Chan, Kathryn C Humm, Rahul Karnik, Shila Mekhoubad, Aviv Regev, Kevin Eggan, Alexander Meissner. Nature 2014
327
12

ZNF445 is a primary regulator of genomic imprinting.
Nozomi Takahashi, Andrea Coluccio, Christian W Thorball, Evarist Planet, Hui Shi, Sandra Offner, Priscilla Turelli, Michael Imbeault, Anne C Ferguson-Smith, Didier Trono. Genes Dev 2019
50
16

A unique regulatory phase of DNA methylation in the early mammalian embryo.
Zachary D Smith, Michelle M Chan, Tarjei S Mikkelsen, Hongcang Gu, Andreas Gnirke, Aviv Regev, Alexander Meissner. Nature 2012
618
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.