A citation-based method for searching scientific literature

Alejandro Saettone, Syed Nabeel-Shah, Jyoti Garg, Jean-Philippe Lambert, Ronald E Pearlman, Jeffrey Fillingham. Genes (Basel) 2019
Times Cited: 7







List of co-cited articles
48 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Proteomic Analysis of Histones H2A/H2B and Variant Hv1 in Tetrahymena thermophila Reveals an Ancient Network of Chaperones.
Kanwal Ashraf, Syed Nabeel-Shah, Jyoti Garg, Alejandro Saettone, Joanna Derynck, Anne-Claude Gingras, Jean-Philippe Lambert, Ronald E Pearlman, Jeffrey Fillingham. Mol Biol Evol 2019
9
85

The bromodomain-containing protein Ibd1 links multiple chromatin-related protein complexes to highly expressed genes in Tetrahymena thermophila.
Alejandro Saettone, Jyoti Garg, Jean-Philippe Lambert, Syed Nabeel-Shah, Marcelo Ponce, Alyson Burtch, Cristina Thuppu Mudalige, Anne-Claude Gingras, Ronald E Pearlman, Jeffrey Fillingham. Epigenetics Chromatin 2018
11
71

Conserved Asf1-importin β physical interaction in growth and sexual development in the ciliate Tetrahymena thermophila.
Jyoti Garg, Jean-Philippe Lambert, Abdel Karsou, Susanna Marquez, Syed Nabeel-Shah, Virginia Bertucci, Dashaini V Retnasothie, Ernest Radovani, Tony Pawson, Anne-Claude Gingras,[...]. J Proteomics 2013
15
71

SAINTexpress: improvements and additional features in Significance Analysis of INTeractome software.
Guoci Teo, Guomin Liu, Jianping Zhang, Alexey I Nesvizhskii, Anne-Claude Gingras, Hyungwon Choi. J Proteomics 2014
227
71

Integration of biological networks and gene expression data using Cytoscape.
Melissa S Cline, Michael Smoot, Ethan Cerami, Allan Kuchinsky, Nerius Landys, Chris Workman, Rowan Christmas, Iliana Avila-Campilo, Michael Creech, Benjamin Gross,[...]. Nat Protoc 2007
57

Tetrahymena thermophila, a unicellular eukaryote with separate germline and somatic genomes.
Eduardo Orias, Marcella D Cervantes, Eileen P Hamilton. Res Microbiol 2011
59
57

Conjugation in Tetrahymena thermophila. A temporal analysis of cytological stages.
D W Martindale, C D Allis, P J Bruns. Exp Cell Res 1982
159
57

Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote.
Jonathan A Eisen, Robert S Coyne, Martin Wu, Dongying Wu, Mathangi Thiagarajan, Jennifer R Wortman, Jonathan H Badger, Qinghu Ren, Paolo Amedeo, Kristie M Jones,[...]. PLoS Biol 2006
488
57

Microarray analyses of gene expression during the Tetrahymena thermophila life cycle.
Wei Miao, Jie Xiong, Josephine Bowen, Wei Wang, Yifan Liu, Olga Braguinets, Jorg Grigull, Ronald E Pearlman, Eduardo Orias, Martin A Gorovsky. PLoS One 2009
129
57

The Med31 Conserved Component of the Divergent Mediator Complex in Tetrahymena thermophila Participates in Developmental Regulation.
Jyoti Garg, Alejandro Saettone, Syed Nabeel-Shah, Matthew Cadorin, Marcelo Ponce, Susanna Marquez, Shuye Pu, Jack Greenblatt, Jean-Philippe Lambert, Ronald E Pearlman,[...]. Curr Biol 2019
7
57

Molecular genetic analysis of an SNF2/brahma-related gene in Tetrahymena thermophila suggests roles in growth and nuclear development.
Jeffrey S Fillingham, Jyoti Garg, Nora Tsao, Nama Vythilingum, Takamitsu Nishikawa, Ronald E Pearlman. Eukaryot Cell 2006
10
42

Data Independent Acquisition analysis in ProHits 4.0.
Guomin Liu, James D R Knight, Jian Ping Zhang, Chih-Chiang Tsou, Jian Wang, Jean-Philippe Lambert, Brett Larsen, Mike Tyers, Brian Raught, Nuno Bandeira,[...]. J Proteomics 2016
28
42

Tetrahymena as a Unicellular Model Eukaryote: Genetic and Genomic Tools.
Marisa D Ruehle, Eduardo Orias, Chad G Pearson. Genetics 2016
42
42

Nucleus-specific linker histones Hho1 and Mlh1 form distinct protein interactions during growth, starvation and development in Tetrahymena thermophila.
Syed Nabeel-Shah, Kanwal Ashraf, Alejandro Saettone, Jyoti Garg, Joanna Derynck, Jean-Philippe Lambert, Ronald E Pearlman, Jeffrey Fillingham. Sci Rep 2020
4
75

Class I histone deacetylase Thd1p affects nuclear integrity in Tetrahymena thermophila.
Emily A Wiley, Tamara Myers, Kathryn Parker, Theodore Braun, Meng-Chao Yao. Eukaryot Cell 2005
11
28

Gene network landscape of the ciliate Tetrahymena thermophila.
Jie Xiong, Dongxia Yuan, Jeffrey S Fillingham, Jyoti Garg, Xingyi Lu, Yue Chang, Yifan Liu, Chengjie Fu, Ronald E Pearlman, Wei Miao. PLoS One 2011
20
28

deepTools: a flexible platform for exploring deep-sequencing data.
Fidel Ramírez, Friederike Dündar, Sarah Diehl, Björn A Grüning, Thomas Manke. Nucleic Acids Res 2014
863
28

Computational correction of copy number effect improves specificity of CRISPR-Cas9 essentiality screens in cancer cells.
Robin M Meyers, Jordan G Bryan, James M McFarland, Barbara A Weir, Ann E Sizemore, Han Xu, Neekesh V Dharia, Phillip G Montgomery, Glenn S Cowley, Sasha Pantel,[...]. Nat Genet 2017
475
28

Transcriptome analysis of the model protozoan, Tetrahymena thermophila, using Deep RNA sequencing.
Jie Xiong, Xingyi Lu, Zhemin Zhou, Yue Chang, Dongxia Yuan, Miao Tian, Zhigang Zhou, Lei Wang, Chengjie Fu, Eduardo Orias,[...]. PLoS One 2012
72
28

Class I histone deacetylase Thd1p promotes global chromatin condensation in Tetrahymena thermophila.
Kathryn Parker, Julia Maxson, Alissa Mooney, Emily A Wiley. Eukaryot Cell 2007
9
28


NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
28

20 years of the SMART protein domain annotation resource.
Ivica Letunic, Peer Bork. Nucleic Acids Res 2018
658
28

The I-TASSER Suite: protein structure and function prediction.
Jianyi Yang, Renxiang Yan, Ambrish Roy, Dong Xu, Jonathan Poisson, Yang Zhang. Nat Methods 2015
28

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.
Sudhir Kumar, Glen Stecher, Koichiro Tamura. Mol Biol Evol 2016
28

The PSIPRED Protein Analysis Workbench: 20 years on.
Daniel W A Buchan, David T Jones. Nucleic Acids Res 2019
286
28

The program for processing newly synthesized histones H3.1 and H4.
Eric I Campos, Jeffrey Fillingham, Guohong Li, Haiyan Zheng, Philipp Voigt, Wei-Hung W Kuo, Harshika Seepany, Zhonghua Gao, Loren A Day, Jack F Greenblatt,[...]. Nat Struct Mol Biol 2010
145
28

Histone supply: Multitiered regulation ensures chromatin dynamics throughout the cell cycle.
Shweta Mendiratta, Alberto Gatto, Genevieve Almouzni. J Cell Biol 2019
24
28


Regulation of chromatin and gene expression by metabolic enzymes and metabolites.
Xinjian Li, Gabor Egervari, Yugang Wang, Shelley L Berger, Zhimin Lu. Nat Rev Mol Cell Biol 2018
123
28


Molecular evolution of NASP and conserved histone H3/H4 transport pathway.
Syed Nabeel-Shah, Kanwal Ashraf, Ronald E Pearlman, Jeffrey Fillingham. BMC Evol Biol 2014
17
28

Crystal structure of the nucleosome core particle at 2.8 A resolution.
K Luger, A W Mäder, R K Richmond, D F Sargent, T J Richmond. Nature 1997
28

Dynamics of histone H3 deposition in vivo reveal a nucleosome gap-filling mechanism for H3.3 to maintain chromatin integrity.
Dominique Ray-Gallet, Adam Woolfe, Isabelle Vassias, Céline Pellentz, Nicolas Lacoste, Aastha Puri, David C Schultz, Nikolay A Pchelintsev, Peter D Adams, Lars E T Jansen,[...]. Mol Cell 2011
234
28

Emerging roles of linker histones in regulating chromatin structure and function.
Dmitry V Fyodorov, Bing-Rui Zhou, Arthur I Skoultchi, Yawen Bai. Nat Rev Mol Cell Biol 2018
141
28

H3-H4 Histone Chaperone Pathways.
Prerna Grover, Jonathon S Asa, Eric I Campos. Annu Rev Genet 2018
24
28

Diverse functions of WD40 repeat proteins in histone recognition.
Tamaki Suganuma, Samantha G Pattenden, Jerry L Workman. Genes Dev 2008
52
28

Deposition and function of histone H3 variants in Tetrahymena thermophila.
Bowen Cui, Yifan Liu, Martin A Gorovsky. Mol Cell Biol 2006
53
28

Conservation of deposition-related acetylation sites in newly synthesized histones H3 and H4.
R E Sobel, R G Cook, C A Perry, A T Annunziato, C D Allis. Proc Natl Acad Sci U S A 1995
396
28


A DP-like transcription factor protein interacts with E2fl1 to regulate meiosis in Tetrahymena thermophila.
Jing Zhang, Guanxiong Yan, Miao Tian, Yang Ma, Jie Xiong, Wei Miao. Cell Cycle 2018
5
40

RACS: rapid analysis of ChIP-Seq data for contig based genomes.
Alejandro Saettone, Marcelo Ponce, Syed Nabeel-Shah, Jeffrey Fillingham. BMC Bioinformatics 2019
2
100

Nucleosomal DNA regulates the core-histone-binding subunit of the human Hat1 acetyltransferase.
A Verreault, P D Kaufman, R Kobayashi, B Stillman. Curr Biol 1998
267
28

The DREAM complex: master coordinator of cell cycle-dependent gene expression.
Subhashini Sadasivam, James A DeCaprio. Nat Rev Cancer 2013
251
28

Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome.
Eileen P Hamilton, Aurélie Kapusta, Piroska E Huvos, Shelby L Bidwell, Nikhat Zafar, Haibao Tang, Michalis Hadjithomas, Vivek Krishnakumar, Jonathan H Badger, Elisabet V Caler,[...]. Elife 2016
72
28

Exploring the Histone Acetylation Cycle in the Protozoan Model Tetrahymena thermophila.
Suzanne Wahab, Alejandro Saettone, Syed Nabeel-Shah, Nora Dannah, Jeffrey Fillingham. Front Cell Dev Biol 2020
2
100

ProHits-viz: a suite of web tools for visualizing interaction proteomics data.
James D R Knight, Hyungwon Choi, Gagan D Gupta, Laurence Pelletier, Brian Raught, Alexey I Nesvizhskii, Anne-Claude Gingras. Nat Methods 2017
54
28

Biolistic transformation of macro- and micronuclei.
P J Bruns, D Cassidy-Hanley. Methods Cell Biol 2000
70
28

A high resolution protein interaction map of the yeast Mediator complex.
Benjamin Guglielmi, Nynke L van Berkum, Benjamin Klapholz, Theo Bijma, Muriel Boube, Claire Boschiero, Henri-Marc Bourbon, Frank C P Holstege, Michel Werner. Nucleic Acids Res 2004
161
14

Genetic interactions of DST1 in Saccharomyces cerevisiae suggest a role of TFIIS in the initiation-elongation transition.
Francisco Malagon, Amy H Tong, Brenda K Shafer, Jeffrey N Strathern. Genetics 2004
42
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.