A citation-based method for searching scientific literature

Feda H Hamdan, Steven A Johnsen. Cancers (Basel) 2019
Times Cited: 10







List of co-cited articles
84 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
40

Identification of focally amplified lineage-specific super-enhancers in human epithelial cancers.
Xiaoyang Zhang, Peter S Choi, Joshua M Francis, Marcin Imielinski, Hideo Watanabe, Andrew D Cherniack, Matthew Meyerson. Nat Genet 2016
206
40

Histone H3K27ac separates active from poised enhancers and predicts developmental state.
Menno P Creyghton, Albert W Cheng, G Grant Welstead, Tristan Kooistra, Bryce W Carey, Eveline J Steine, Jacob Hanna, Michael A Lodato, Garrett M Frampton, Phillip A Sharp,[...]. Proc Natl Acad Sci U S A 2010
30

Selective inhibition of tumor oncogenes by disruption of super-enhancers.
Jakob Lovén, Heather A Hoke, Charles Y Lin, Ashley Lau, David A Orlando, Christopher R Vakoc, James E Bradner, Tong Ihn Lee, Richard A Young. Cell 2013
30

Enhancer RNA - P2RY2e induced by estrogen promotes malignant behaviors of bladder cancer.
Mengting Ding, Hengji Zhan, Xinhui Liao, Aolin Li, Yucheng Zhong, Qunjun Gao, Yuchen Liu, Weiren Huang, Zhiming Cai. Int J Biol Sci 2018
15
30

Enhancer RNAs and regulated transcriptional programs.
Michael T Y Lam, Wenbo Li, Michael G Rosenfeld, Christopher K Glass. Trends Biochem Sci 2014
326
30

Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Warren A Whyte, David A Orlando, Denes Hnisz, Brian J Abraham, Charles Y Lin, Michael H Kagey, Peter B Rahl, Tong Ihn Lee, Richard A Young. Cell 2013
30

Super-Enhancer-Driven Transcriptional Dependencies in Cancer.
Satyaki Sengupta, Rani E George. Trends Cancer 2017
118
30

Enhancer RNAs in cancer: regulation, mechanisms and therapeutic potential.
Joo-Hyung Lee, Feng Xiong, Wenbo Li. RNA Biol 2020
27
30

Widespread transcription at neuronal activity-regulated enhancers.
Tae-Kyung Kim, Martin Hemberg, Jesse M Gray, Allen M Costa, Daniel M Bear, Jing Wu, David A Harmin, Mike Laptewicz, Kellie Barbara-Haley, Scott Kuersten,[...]. Nature 2010
30

Transcription factor trapping by RNA in gene regulatory elements.
Alla A Sigova, Brian J Abraham, Xiong Ji, Benoit Molinie, Nancy M Hannett, Yang Eric Guo, Mohini Jangi, Cosmas C Giallourakis, Phillip A Sharp, Richard A Young. Science 2015
251
30

Enhancer RNAs participate in androgen receptor-driven looping that selectively enhances gene activation.
Chen-Lin Hsieh, Teng Fei, Yiwen Chen, Tiantian Li, Yanfei Gao, Xiaodong Wang, Tong Sun, Christopher J Sweeney, Gwo-Shu Mary Lee, Shaoyong Chen,[...]. Proc Natl Acad Sci U S A 2014
231
30

Enhanced Identification of Transcriptional Enhancers Provides Mechanistic Insights into Diseases.
Yasuhiro Murakawa, Masahito Yoshihara, Hideya Kawaji, Miki Nishikawa, Hatem Zayed, Harukazu Suzuki, Fantom Consortium, Yoshihide Hayashizaki. Trends Genet 2016
56
30

Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.
Fan Lai, Ulf A Orom, Matteo Cesaroni, Malte Beringer, Dylan J Taatjes, Gerd A Blobel, Ramin Shiekhattar. Nature 2013
592
30

Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation.
Wenbo Li, Dimple Notani, Qi Ma, Bogdan Tanasa, Esperanza Nunez, Aaron Yun Chen, Daria Merkurjev, Jie Zhang, Kenneth Ohgi, Xiaoyuan Song,[...]. Nature 2013
629
30

Enhancer RNA facilitates NELF release from immediate early genes.
Katie Schaukowitch, Jae-Yeol Joo, Xihui Liu, Jonathan K Watts, Carlos Martinez, Tae-Kyung Kim. Mol Cell 2014
255
30

Polyadenylation site-induced decay of upstream transcripts enforces promoter directionality.
Evgenia Ntini, Aino I Järvelin, Jette Bornholdt, Yun Chen, Mette Boyd, Mette Jørgensen, Robin Andersson, Ilka Hoof, Aleks Schein, Peter R Andersen,[...]. Nat Struct Mol Biol 2013
189
30

An atlas of active enhancers across human cell types and tissues.
Robin Andersson, Claudia Gebhard, Irene Miguel-Escalada, Ilka Hoof, Jette Bornholdt, Mette Boyd, Yun Chen, Xiaobei Zhao, Christian Schmidl, Takahiro Suzuki,[...]. Nature 2014
30

Transcriptional landscape and clinical utility of enhancer RNAs for eRNA-targeted therapy in cancer.
Zhao Zhang, Joo-Hyung Lee, Hang Ruan, Youqiong Ye, Joanna Krakowiak, Qingsong Hu, Yu Xiang, Jing Gong, Bingying Zhou, Li Wang,[...]. Nat Commun 2019
82
30

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
20

GREAT improves functional interpretation of cis-regulatory regions.
Cory Y McLean, Dave Bristor, Michael Hiller, Shoa L Clarke, Bruce T Schaar, Craig B Lowe, Aaron M Wenger, Gill Bejerano. Nat Biotechnol 2010
20

Hotspots of aberrant enhancer activity punctuate the colorectal cancer epigenome.
Andrea J Cohen, Alina Saiakhova, Olivia Corradin, Jennifer M Luppino, Katreya Lovrenert, Cynthia F Bartels, James J Morrow, Stephen C Mack, Gursimran Dhillon, Lydia Beard,[...]. Nat Commun 2017
64
20


Hallmarks of cancer: the next generation.
Douglas Hanahan, Robert A Weinberg. Cell 2011
20

BRD4 and Cancer: going beyond transcriptional regulation.
Benedetta Donati, Eugenia Lorenzini, Alessia Ciarrocchi. Mol Cancer 2018
211
20

CTD tyrosine phosphorylation impairs termination factor recruitment to RNA polymerase II.
Andreas Mayer, Martin Heidemann, Michael Lidschreiber, Amelie Schreieck, Mai Sun, Corinna Hintermair, Elisabeth Kremmer, Dirk Eick, Patrick Cramer. Science 2012
180
20

Small-molecule targeting of brachyury transcription factor addiction in chordoma.
Tanaz Sharifnia, Mathias J Wawer, Ting Chen, Qing-Yuan Huang, Barbara A Weir, Ann Sizemore, Matthew A Lawlor, Amy Goodale, Glenn S Cowley, Francisca Vazquez,[...]. Nat Med 2019
65
20

Covalent targeting of remote cysteine residues to develop CDK12 and CDK13 inhibitors.
Tinghu Zhang, Nicholas Kwiatkowski, Calla M Olson, Sarah E Dixon-Clarke, Brian J Abraham, Ann K Greifenberg, Scott B Ficarro, Jonathan M Elkins, Yanke Liang, Nancy M Hannett,[...]. Nat Chem Biol 2016
158
20

Diversity and Emerging Roles of Enhancer RNA in Regulation of Gene Expression and Cell Fate.
Preston R Arnold, Andrew D Wells, Xian C Li. Front Cell Dev Biol 2020
74
20

A novel enhancer RNA, Hmrhl, positively regulates its host gene, phkb, in chronic myelogenous leukemia.
Roshan Fatima, Subhendu Roy Choudhury, Divya T R, Utsa Bhaduri, M R S Rao. Noncoding RNA Res 2019
6
33

AP001056.1, A Prognosis-Related Enhancer RNA in Squamous Cell Carcinoma of the Head and Neck.
Xiaolian Gu, Lixiao Wang, Linda Boldrup, Philip J Coates, Robin Fahraeus, Nicola Sgaramella, Torben Wilms, Karin Nylander. Cancers (Basel) 2019
26
20

Enhancer-associated RNAs as therapeutic targets.
Nicolas Léveillé, Carlos A Melo, Reuven Agami. Expert Opin Biol Ther 2015
18
20

Transcriptional control by enhancers and enhancer RNAs.
Michael W Lewis, Shen Li, Hector L Franco. Transcription 2019
27
20

Genome-wide dose-dependent inhibition of histone deacetylases studies reveal their roles in enhancer remodeling and suppression of oncogenic super-enhancers.
Gilson J Sanchez, Phillip A Richmond, Eric N Bunker, Samuel S Karman, Joseph Azofeifa, Aaron T Garnett, Quanbin Xu, Graycen E Wheeler, Cathryn M Toomey, Qinghong Zhang,[...]. Nucleic Acids Res 2018
34
20

Transcriptional Addiction in Cancer.
James E Bradner, Denes Hnisz, Richard A Young. Cell 2017
492
20

CDK7 inhibition suppresses super-enhancer-linked oncogenic transcription in MYCN-driven cancer.
Edmond Chipumuro, Eugenio Marco, Camilla L Christensen, Nicholas Kwiatkowski, Tinghu Zhang, Clark M Hatheway, Brian J Abraham, Bandana Sharma, Caleb Yeung, Abigail Altabef,[...]. Cell 2014
366
20

Super-enhancer function and its application in cancer targeted therapy.
Faqing Tang, Zongbei Yang, Yuan Tan, Yuejin Li. NPJ Precis Oncol 2020
32
20

Enhancer transcription: what, where, when, and why?
Nathaniel D Tippens, Anniina Vihervaara, John T Lis. Genes Dev 2018
49
20

Targeting Oncogenic Super Enhancers in MYC-Dependent AML Using a Small Molecule Activator of NR4A Nuclear Receptors.
S Greg Call, Ryan P Duren, Anil K Panigrahi, Loc Nguyen, Pablo R Freire, Sandra L Grimm, Cristian Coarfa, Orla M Conneely. Sci Rep 2020
12
20

A Myc enhancer cluster regulates normal and leukaemic haematopoietic stem cell hierarchies.
Carsten Bahr, Lisa von Paleske, Veli V Uslu, Silvia Remeseiro, Naoya Takayama, Stanley W Ng, Alex Murison, Katja Langenfeld, Massimo Petretich, Roberta Scognamiglio,[...]. Nature 2018
141
20

A Pan-Cancer Analysis of Enhancer Expression in Nearly 9000 Patient Samples.
Han Chen, Chunyan Li, Xinxin Peng, Zhicheng Zhou, John N Weinstein, Han Liang. Cell 2018
131
20

Transcribed enhancers lead waves of coordinated transcription in transitioning mammalian cells.
Erik Arner, Carsten O Daub, Kristoffer Vitting-Seerup, Robin Andersson, Berit Lilje, Finn Drabløs, Andreas Lennartsson, Michelle Rönnerblad, Olga Hrydziuszko, Morana Vitezic,[...]. Science 2015
347
20

RNA Stabilizes Transcription-Dependent Chromatin Loops Induced By Nuclear Hormones.
Antonio Pezone, Candida Zuchegna, Alfonso Tramontano, Antonella Romano, Giusi Russo, Mariarosaria de Rosa, Maria Vinciguerra, Antonio Porcellini, Max E Gottesman, Enrico Vittorio Avvedimento. Sci Rep 2019
10
20

RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.
Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, David Kazadi, Jianbo Sun, Alexander Federation, Jaime Chao, Oliver Elliott, Zhi-Ping Liu,[...]. Cell 2015
266
20

Epstein-Barr virus super-enhancer eRNAs are essential for MYC oncogene expression and lymphoblast proliferation.
Jun Liang, Hufeng Zhou, Catherine Gerdt, Min Tan, Tyler Colson, Kenneth M Kaye, Elliott Kieff, Bo Zhao. Proc Natl Acad Sci U S A 2016
53
20

The enhancer RNA ARIEL activates the oncogenic transcriptional program in T-cell acute lymphoblastic leukemia.
Shi Hao Tan, Wei Zhong Leong, Phuong Cao Thi Ngoc, Tze King Tan, Fatima Carla Bertulfo, Mei Chee Lim, Omer An, Zhenhua Li, Allen Eng Juh Yeoh, Melissa J Fullwood,[...]. Blood 2019
28
20

HPSE enhancer RNA promotes cancer progression through driving chromatin looping and regulating hnRNPU/p300/EGR1/HPSE axis.
Wanju Jiao, Yajun Chen, Huajie Song, Dan Li, Hong Mei, Feng Yang, Erhu Fang, Xiaojing Wang, Kai Huang, Liduan Zheng,[...]. Oncogene 2018
49
20

Visualization of Enhancer-Derived Noncoding RNA.
Youtaro Shibayama, Stephanie Fanucchi, Musa M Mhlanga. Methods Mol Biol 2017
8
25

eRNAs are required for p53-dependent enhancer activity and gene transcription.
Carlos A Melo, Jarno Drost, Patrick J Wijchers, Harmen van de Werken, Elzo de Wit, Joachim A F Oude Vrielink, Ran Elkon, Sónia A Melo, Nicolas Léveillé, Raghu Kalluri,[...]. Mol Cell 2013
374
20

Identification and characterization of enhancers controlling the inflammatory gene expression program in macrophages.
Serena Ghisletti, Iros Barozzi, Flore Mietton, Sara Polletti, Francesca De Santa, Elisa Venturini, Lorna Gregory, Lorne Lonie, Adeline Chew, Chia-Lin Wei,[...]. Immunity 2010
462
20


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.