A citation-based method for searching scientific literature

Masatoshi Inoue, Atsuya Takeuchi, Satoshi Manita, Shin-Ichiro Horigane, Masayuki Sakamoto, Ryosuke Kawakami, Kazushi Yamaguchi, Kouhei Otomo, Hiroyuki Yokoyama, Ryang Kim, Tatsushi Yokoyama, Sayaka Takemoto-Kimura, Manabu Abe, Michiko Okamura, Yayoi Kondo, Sean Quirin, Charu Ramakrishnan, Takeshi Imamura, Kenji Sakimura, Tomomi Nemoto, Masanobu Kano, Hajime Fujii, Karl Deisseroth, Kazuo Kitamura, Haruhiko Bito. Cell 2019
Times Cited: 87







List of co-cited articles
1205 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
60

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
264
57

Sensitive red protein calcium indicators for imaging neural activity.
Hod Dana, Boaz Mohar, Yi Sun, Sujatha Narayan, Andrew Gordus, Jeremy P Hasseman, Getahun Tsegaye, Graham T Holt, Amy Hu, Deepika Walpita,[...]. Elife 2016
411
45


Imaging neural activity in worms, flies and mice with improved GCaMP calcium indicators.
Lin Tian, S Andrew Hires, Tianyi Mao, Daniel Huber, M Eugenia Chiappe, Sreekanth H Chalasani, Leopoldo Petreanu, Jasper Akerboom, Sean A McKinney, Eric R Schreiter,[...]. Nat Methods 2009
33

Genetically encoded indicators of neuronal activity.
Michael Z Lin, Mark J Schnitzer. Nat Neurosci 2016
309
27

Ultrafast neuronal imaging of dopamine dynamics with designed genetically encoded sensors.
Tommaso Patriarchi, Jounhong Ryan Cho, Katharina Merten, Mark W Howe, Aaron Marley, Wei-Hong Xiong, Robert W Folk, Gerard Joey Broussard, Ruqiang Liang, Min Jee Jang,[...]. Science 2018
329
24

Optimization of a GCaMP calcium indicator for neural activity imaging.
Jasper Akerboom, Tsai-Wen Chen, Trevor J Wardill, Lin Tian, Jonathan S Marvin, Sevinç Mutlu, Nicole Carreras Calderón, Federico Esposti, Bart G Borghuis, Xiaonan Richard Sun,[...]. J Neurosci 2012
737
21

An expanded palette of genetically encoded Ca²⁺ indicators.
Yongxin Zhao, Satoko Araki, Jiahui Wu, Takayuki Teramoto, Yu-Fen Chang, Masahiro Nakano, Ahmed S Abdelfattah, Manabi Fujiwara, Takeshi Ishihara, Takeharu Nagai,[...]. Science 2011
799
21

A Genetically Encoded Fluorescent Sensor Enables Rapid and Specific Detection of Dopamine in Flies, Fish, and Mice.
Fangmiao Sun, Jianzhi Zeng, Miao Jing, Jingheng Zhou, Jiesi Feng, Scott F Owen, Yichen Luo, Funing Li, Huan Wang, Takashi Yamaguchi,[...]. Cell 2018
251
18

Two-photon laser scanning fluorescence microscopy.
W Denk, J H Strickler, W W Webb. Science 1990
18

Imaging calcium in neurons.
Christine Grienberger, Arthur Konnerth. Neuron 2012
617
18

A genetically encoded fluorescent sensor for in vivo imaging of GABA.
Jonathan S Marvin, Yoshiteru Shimoda, Vincent Magloire, Marco Leite, Takashi Kawashima, Thomas P Jensen, Ilya Kolb, Erika L Knott, Ondrej Novak, Kaspar Podgorski,[...]. Nat Methods 2019
113
17

Millisecond-timescale, genetically targeted optical control of neural activity.
Edward S Boyden, Feng Zhang, Ernst Bamberg, Georg Nagel, Karl Deisseroth. Nat Neurosci 2005
17

An optimized fluorescent probe for visualizing glutamate neurotransmission.
Jonathan S Marvin, Bart G Borghuis, Lin Tian, Joseph Cichon, Mark T Harnett, Jasper Akerboom, Andrew Gordus, Sabine L Renninger, Tsai-Wen Chen, Cornelia I Bargmann,[...]. Nat Methods 2013
488
17

Transgenic mice for intersectional targeting of neural sensors and effectors with high specificity and performance.
Linda Madisen, Aleena R Garner, Daisuke Shimaoka, Amy S Chuong, Nathan C Klapoetke, Lu Li, Alexander van der Bourg, Yusuke Niino, Ladan Egolf, Claudio Monetti,[...]. Neuron 2015
517
17

Bright and photostable chemigenetic indicators for extended in vivo voltage imaging.
Ahmed S Abdelfattah, Takashi Kawashima, Amrita Singh, Ondrej Novak, Hui Liu, Yichun Shuai, Yi-Chieh Huang, Luke Campagnola, Stephanie C Seeman, Jianing Yu,[...]. Science 2019
153
17

A large field of view two-photon mesoscope with subcellular resolution for in vivo imaging.
Nicholas James Sofroniew, Daniel Flickinger, Jonathan King, Karel Svoboda. Elife 2016
236
16

Fluorescent indicators for Ca2+ based on green fluorescent proteins and calmodulin.
A Miyawaki, J Llopis, R Heim, J M McCaffery, J A Adams, M Ikura, R Y Tsien. Nature 1997
16

A Genetically Encoded Fluorescent Sensor for Rapid and Specific In Vivo Detection of Norepinephrine.
Jiesi Feng, Changmei Zhang, Julieta E Lischinsky, Miao Jing, Jingheng Zhou, Huan Wang, Yajun Zhang, Ao Dong, Zhaofa Wu, Hao Wu,[...]. Neuron 2019
128
14

Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain.
Jeffrey N Stirman, Ikuko T Smith, Michael W Kudenov, Spencer L Smith. Nat Biotechnol 2016
143
14

Fast high-resolution miniature two-photon microscopy for brain imaging in freely behaving mice.
Weijian Zong, Runlong Wu, Mingli Li, Yanhui Hu, Yijun Li, Jinghang Li, Hao Rong, Haitao Wu, Yangyang Xu, Yang Lu,[...]. Nat Methods 2017
165
14

A Suite of Transgenic Driver and Reporter Mouse Lines with Enhanced Brain-Cell-Type Targeting and Functionality.
Tanya L Daigle, Linda Madisen, Travis A Hage, Matthew T Valley, Ulf Knoblich, Rylan S Larsen, Marc M Takeno, Lawrence Huang, Hong Gu, Rachael Larsen,[...]. Cell 2018
212
14

Genetically encoded calcium indicators for multi-color neural activity imaging and combination with optogenetics.
Jasper Akerboom, Nicole Carreras Calderón, Lin Tian, Sebastian Wabnig, Matthias Prigge, Johan Tolö, Andrew Gordus, Michael B Orger, Kristen E Severi, John J Macklin,[...]. Front Mol Neurosci 2013
414
14

In vivo three-photon imaging of activity of GCaMP6-labeled neurons deep in intact mouse brain.
Dimitre G Ouzounov, Tianyu Wang, Mengran Wang, Danielle D Feng, Nicholas G Horton, Jean C Cruz-Hernández, Yu-Ting Cheng, Jacob Reimer, Andreas S Tolias, Nozomi Nishimura,[...]. Nat Methods 2017
202
14

Ultrafast Two-Photon Imaging of a High-Gain Voltage Indicator in Awake Behaving Mice.
Vincent Villette, Mariya Chavarha, Ivan K Dimov, Jonathan Bradley, Lagnajeet Pradhan, Benjamin Mathieu, Stephen W Evans, Simon Chamberland, Dongqing Shi, Renzhi Yang,[...]. Cell 2019
96
14

Kilohertz frame-rate two-photon tomography.
Abbas Kazemipour, Ondrej Novak, Daniel Flickinger, Jonathan S Marvin, Ahmed S Abdelfattah, Jonathan King, Philip M Borden, Jeong Jun Kim, Sarah H Al-Abdullatif, Parker E Deal,[...]. Nat Methods 2019
57
22

A genetically encoded near-infrared fluorescent calcium ion indicator.
Yong Qian, Kiryl D Piatkevich, Benedict Mc Larney, Ahmed S Abdelfattah, Sohum Mehta, Mitchell H Murdock, Sven Gottschalk, Rosana S Molina, Wei Zhang, Yingche Chen,[...]. Nat Methods 2019
75
16

Stability, affinity, and chromatic variants of the glutamate sensor iGluSnFR.
Jonathan S Marvin, Benjamin Scholl, Daniel E Wilson, Kaspar Podgorski, Abbas Kazemipour, Johannes Alexander Müller, Susanne Schoch, Francisco José Urra Quiroz, Nelson Rebola, Huan Bao,[...]. Nat Methods 2018
136
13

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
477
13

Circularly permuted green fluorescent proteins engineered to sense Ca2+.
T Nagai, A Sawano, E S Park, A Miyawaki. Proc Natl Acad Sci U S A 2001
705
13

Voltage imaging and optogenetics reveal behaviour-dependent changes in hippocampal dynamics.
Yoav Adam, Jeong J Kim, Shan Lou, Yongxin Zhao, Michael E Xie, Daan Brinks, Hao Wu, Mohammed A Mostajo-Radji, Simon Kheifets, Vicente Parot,[...]. Nature 2019
113
13

A genetically encoded fluorescent acetylcholine indicator for in vitro and in vivo studies.
Miao Jing, Peng Zhang, Guangfu Wang, Jiesi Feng, Lukas Mesik, Jianzhi Zeng, Huoqing Jiang, Shaohua Wang, Jess C Looby, Nick A Guagliardo,[...]. Nat Biotechnol 2018
133
12

Rational design of a high-affinity, fast, red calcium indicator R-CaMP2.
Masatoshi Inoue, Atsuya Takeuchi, Shin-ichiro Horigane, Masamichi Ohkura, Keiko Gengyo-Ando, Hajime Fujii, Satoshi Kamijo, Sayaka Takemoto-Kimura, Masanobu Kano, Junichi Nakai,[...]. Nat Methods 2015
147
12

Fast, in vivo voltage imaging using a red fluorescent indicator.
Madhuvanthi Kannan, Ganesh Vasan, Cheng Huang, Simon Haziza, Jin Zhong Li, Hakan Inan, Mark J Schnitzer, Vincent A Pieribone. Nat Methods 2018
57
17

Population imaging of neural activity in awake behaving mice.
Kiryl D Piatkevich, Seth Bensussen, Hua-An Tseng, Sanaya N Shroff, Violeta Gisselle Lopez-Huerta, Demian Park, Erica E Jung, Or A Shemesh, Christoph Straub, Howard J Gritton,[...]. Nature 2019
84
11

A genetically encoded Ca2+ indicator based on circularly permutated sea anemone red fluorescent protein eqFP578.
Yi Shen, Hod Dana, Ahmed S Abdelfattah, Ronak Patel, Jamien Shea, Rosana S Molina, Bijal Rawal, Vladimir Rancic, Yu-Fen Chang, Lanshi Wu,[...]. BMC Biol 2018
48
20

Independent optical excitation of distinct neural populations.
Nathan C Klapoetke, Yasunobu Murata, Sung Soo Kim, Stefan R Pulver, Amanda Birdsey-Benson, Yong Ku Cho, Tania K Morimoto, Amy S Chuong, Eric J Carpenter, Zhijian Tian,[...]. Nat Methods 2014
948
11

Improved calcium sensor GCaMP-X overcomes the calcium channel perturbations induced by the calmodulin in GCaMP.
Yaxiong Yang, Nan Liu, Yuanyuan He, Yuxia Liu, Lin Ge, Linzhi Zou, Sen Song, Wei Xiong, Xiaodong Liu. Nat Commun 2018
74
13

Volumetric Ca2+ Imaging in the Mouse Brain Using Hybrid Multiplexed Sculpted Light Microscopy.
Siegfried Weisenburger, Frank Tejera, Jeffrey Demas, Brandon Chen, Jason Manley, Fraser T Sparks, Francisca Martínez Traub, Tanya Daigle, Hongkui Zeng, Attila Losonczy,[...]. Cell 2019
62
14

Imaging large-scale cellular activity in spinal cord of freely behaving mice.
Kohei J Sekiguchi, Pavel Shekhtmeyster, Katharina Merten, Alexander Arena, Daniela Cook, Elizabeth Hoffman, Alexander Ngo, Axel Nimmerjahn. Nat Commun 2016
60
15

High-speed recording of neural spikes in awake mice and flies with a fluorescent voltage sensor.
Yiyang Gong, Cheng Huang, Jin Zhong Li, Benjamin F Grewe, Yanping Zhang, Stephan Eismann, Mark J Schnitzer. Science 2015
239
10

Improved methods for marking active neuron populations.
Benjamien Moeyaert, Graham Holt, Rajtarun Madangopal, Alberto Perez-Alvarez, Brenna C Fearey, Nicholas F Trojanowski, Julia Ledderose, Timothy A Zolnik, Aniruddha Das, Davina Patel,[...]. Nat Commun 2018
46
19

Neural circuits. Labeling of active neural circuits in vivo with designed calcium integrators.
Benjamin F Fosque, Yi Sun, Hod Dana, Chao-Tsung Yang, Tomoko Ohyama, Michael R Tadross, Ronak Patel, Marta Zlatic, Douglas S Kim, Misha B Ahrens,[...]. Science 2015
219
10

Simultaneous all-optical manipulation and recording of neural circuit activity with cellular resolution in vivo.
Adam M Packer, Lloyd E Russell, Henry W P Dalgleish, Michael Häusser. Nat Methods 2015
265
10

CaImAn an open source tool for scalable calcium imaging data analysis.
Andrea Giovannucci, Johannes Friedrich, Pat Gunn, Jérémie Kalfon, Brandon L Brown, Sue Ann Koay, Jiannis Taxidis, Farzaneh Najafi, Jeffrey L Gauthier, Pengcheng Zhou,[...]. Elife 2019
152
10

High-speed, miniaturized fluorescence microscopy in freely moving mice.
Benjamin A Flusberg, Axel Nimmerjahn, Eric D Cocker, Eran A Mukamel, Robert P J Barretto, Tony H Ko, Laurie D Burns, Juergen C Jung, Mark J Schnitzer. Nat Methods 2008
221
9

Simultaneous fast measurement of circuit dynamics at multiple sites across the mammalian brain.
Christina K Kim, Samuel J Yang, Nandini Pichamoorthy, Noah P Young, Isaac Kauvar, Joshua H Jennings, Talia N Lerner, Andre Berndt, Soo Yeun Lee, Charu Ramakrishnan,[...]. Nat Methods 2016
168
9

Simultaneous Optogenetics and Cellular Resolution Calcium Imaging During Active Behavior Using a Miniaturized Microscope.
Alice M Stamatakis, Mike J Schachter, Srishti Gulati, Kevin T Zitelli, Sam Malanowski, Arash Tajik, Christopher Fritz, Mark Trulson, Stephani L Otte. Front Neurosci 2018
34
23

In vivo three-photon microscopy of subcortical structures within an intact mouse brain.
Nicholas G Horton, Ke Wang, Demirhan Kobat, Catharine G Clark, Frank W Wise, Chris B Schaffer, Chris Xu. Nat Photonics 2013
533
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.