A citation-based method for searching scientific literature

Judit Domingo-Prim, Martin Endara-Coll, Franziska Bonath, Sonia Jimeno, Rosario Prados-Carvajal, Marc R Friedländer, Pablo Huertas, Neus Visa. Nat Commun 2019
Times Cited: 44







List of co-cited articles
639 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


BRCA2 controls DNA:RNA hybrid level at DSBs by mediating RNase H2 recruitment.
Giuseppina D'Alessandro, Donna Rose Whelan, Sean Michael Howard, Valerio Vitelli, Xavier Renaudin, Marek Adamowicz, Fabio Iannelli, Corey Winston Jones-Weinert, MiYoung Lee, Valentina Matti,[...]. Nat Commun 2018
90
50

Senataxin resolves RNA:DNA hybrids forming at DNA double-strand breaks to prevent translocations.
Sarah Cohen, Nadine Puget, Yea-Lih Lin, Thomas Clouaire, Marion Aguirrebengoa, Vincent Rocher, Philippe Pasero, Yvan Canitrot, Gaëlle Legube. Nat Commun 2018
124
50

Transient RNA-DNA Hybrids Are Required for Efficient Double-Strand Break Repair.
Corina Ohle, Rafael Tesorero, Géza Schermann, Nikolay Dobrev, Irmgard Sinning, Tamás Fischer. Cell 2016
192
50

Human Rad52 Promotes XPG-Mediated R-loop Processing to Initiate Transcription-Associated Homologous Recombination Repair.
Takaaki Yasuhara, Reona Kato, Yoshihiko Hagiwara, Bunsyo Shiotani, Motohiro Yamauchi, Shinichiro Nakada, Atsushi Shibata, Kiyoshi Miyagawa. Cell 2018
118
45

Damage-induced lncRNAs control the DNA damage response through interaction with DDRNAs at individual double-strand breaks.
Flavia Michelini, Sethuramasundaram Pitchiaya, Valerio Vitelli, Sheetal Sharma, Ubaldo Gioia, Fabio Pessina, Matteo Cabrini, Yejun Wang, Ilaria Capozzo, Fabio Iannelli,[...]. Nat Cell Biol 2017
140
40

Drosha drives the formation of DNA:RNA hybrids around DNA break sites to facilitate DNA repair.
Wei-Ting Lu, Ben R Hawley, George L Skalka, Robert A Baldock, Ewan M Smith, Aldo S Bader, Michal Malewicz, Felicity Z Watts, Ania Wilczynska, Martin Bushell. Nat Commun 2018
93
38

Site-specific DICER and DROSHA RNA products control the DNA-damage response.
Sofia Francia, Flavia Michelini, Alka Saxena, Dave Tang, Michiel de Hoon, Viviana Anelli, Marina Mione, Piero Carninci, Fabrizio d'Adda di Fagagna. Nature 2012
330
36

DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.
Lei Li, Devon R Germain, Ho-Yin Poon, Matthew R Hildebrandt, Elizabeth A Monckton, Darin McDonald, Michael J Hendzel, Roseline Godbout. Mol Cell Biol 2016
69
31

Tyrosine kinase c-Abl couples RNA polymerase II transcription to DNA double-strand breaks.
Kaspar Burger, Margarita Schlackow, Monika Gullerova. Nucleic Acids Res 2019
36
38

ATM-dependent chromatin changes silence transcription in cis to DNA double-strand breaks.
Niraj M Shanbhag, Ilona U Rafalska-Metcalf, Carlo Balane-Bolivar, Susan M Janicki, Roger A Greenberg. Cell 2010
464
29

Human senataxin resolves RNA/DNA hybrids formed at transcriptional pause sites to promote Xrn2-dependent termination.
Konstantina Skourti-Stathaki, Nicholas J Proudfoot, Natalia Gromak. Mol Cell 2011
430
27


Transcript-RNA-templated DNA recombination and repair.
Havva Keskin, Ying Shen, Fei Huang, Mikir Patel, Taehwan Yang, Katie Ashley, Alexander V Mazin, Francesca Storici. Nature 2014
178
25


Classical non-homologous end-joining pathway utilizes nascent RNA for error-free double-strand break repair of transcribed genes.
Anirban Chakraborty, Nisha Tapryal, Tatiana Venkova, Nobuo Horikoshi, Raj K Pandita, Altaf H Sarker, Partha S Sarkar, Tej K Pandita, Tapas K Hazra. Nat Commun 2016
93
25

Transcription-coupled nucleotide excision repair factors promote R-loop-induced genome instability.
Julie Sollier, Caroline Townsend Stork, María L García-Rubio, Renee D Paulsen, Andrés Aguilera, Karlene A Cimprich. Mol Cell 2014
272
25

Functional transcription promoters at DNA double-strand breaks mediate RNA-driven phase separation of damage-response factors.
Fabio Pessina, Fabio Giavazzi, Yandong Yin, Ubaldo Gioia, Valerio Vitelli, Alessandro Galbiati, Sara Barozzi, Massimiliano Garre, Amanda Oldani, Andrew Flaus,[...]. Nat Cell Biol 2019
91
25

BRCA1 recruitment to transcriptional pause sites is required for R-loop-driven DNA damage repair.
Elodie Hatchi, Konstantina Skourti-Stathaki, Steffen Ventz, Luca Pinello, Angela Yen, Kinga Kamieniarz-Gdula, Stoil Dimitrov, Shailja Pathania, Kristine M McKinney, Matthew L Eaton,[...]. Mol Cell 2015
217
22

R-Loops as Cellular Regulators and Genomic Threats.
Madzia P Crossley, Michael Bocek, Karlene A Cimprich. Mol Cell 2019
184
22

R Loops: From Physiological to Pathological Roles.
Tatiana García-Muse, Andrés Aguilera. Cell 2019
123
22

The DNA-damage response in human biology and disease.
Stephen P Jackson, Jiri Bartek. Nature 2009
20

DNAPKcs-dependent arrest of RNA polymerase II transcription in the presence of DNA breaks.
Tibor Pankotai, Céline Bonhomme, David Chen, Evi Soutoglou. Nat Struct Mol Biol 2012
147
20

Sae2/CtIP prevents R-loop accumulation in eukaryotic cells.
Nodar Makharashvili, Sucheta Arora, Yizhi Yin, Qiong Fu, Xuemei Wen, Ji-Hoon Lee, Chung-Hsuan Kao, Justin Wc Leung, Kyle M Miller, Tanya T Paull. Elife 2018
32
28

RRP6/EXOSC10 is required for the repair of DNA double-strand breaks by homologous recombination.
Consuelo Marin-Vicente, Judit Domingo-Prim, Andrea B Eberle, Neus Visa. J Cell Sci 2015
27
33

A role for small RNAs in DNA double-strand break repair.
Wei Wei, Zhaoqing Ba, Min Gao, Yang Wu, Yanting Ma, Simon Amiard, Charles I White, Jannie Michaela Rendtlew Danielsen, Yun-Gui Yang, Yijun Qi. Cell 2012
374
20

Single-molecule imaging of transcription at damaged chromatin.
Alexandra C Vítor, Sreerama C Sridhara, João C Sabino, Ana I Afonso, Ana R Grosso, Robert M Martin, Sérgio F de Almeida. Sci Adv 2019
23
39


RNA exosome-regulated long non-coding RNA transcription controls super-enhancer activity.
Evangelos Pefanis, Jiguang Wang, Gerson Rothschild, Junghyun Lim, David Kazadi, Jianbo Sun, Alexander Federation, Jaime Chao, Oliver Elliott, Zhi-Ping Liu,[...]. Cell 2015
244
20

BRCA2 prevents R-loop accumulation and associates with TREX-2 mRNA export factor PCID2.
Vaibhav Bhatia, Sonia I Barroso, María L García-Rubio, Emanuela Tumini, Emilia Herrera-Moyano, Andrés Aguilera. Nature 2014
282
20

DNA damage during the G0/G1 phase triggers RNA-templated, Cockayne syndrome B-dependent homologous recombination.
Leizhen Wei, Satoshi Nakajima, Stefanie Böhm, Kara A Bernstein, Zhiyuan Shen, Michael Tsang, Arthur S Levine, Li Lan. Proc Natl Acad Sci U S A 2015
83
20

ATM and ATR substrate analysis reveals extensive protein networks responsive to DNA damage.
Shuhei Matsuoka, Bryan A Ballif, Agata Smogorzewska, E Robert McDonald, Kristen E Hurov, Ji Luo, Corey E Bakalarski, Zhenming Zhao, Nicole Solimini, Yaniv Lerenthal,[...]. Science 2007
18

Mechanism and regulation of DNA end resection in eukaryotes.
Lorraine S Symington. Crit Rev Biochem Mol Biol 2016
198
18

XRN2 Links Transcription Termination to DNA Damage and Replication Stress.
Julio C Morales, Patricia Richard, Praveen L Patidar, Edward A Motea, Tuyen T Dang, James L Manley, David A Boothman. PLoS Genet 2016
54
18

Rad52 Inverse Strand Exchange Drives RNA-Templated DNA Double-Strand Break Repair.
Olga M Mazina, Havva Keskin, Kritika Hanamshet, Francesca Storici, Alexander V Mazin. Mol Cell 2017
65
18

Depletion of the RNA binding protein HNRNPD impairs homologous recombination by inhibiting DNA-end resection and inducing R-loop accumulation.
Luigi Alfano, Antonella Caporaso, Angela Altieri, Milena Dell'Aquila, Claudia Landi, Luca Bini, Francesca Pentimalli, Antonio Giordano. Nucleic Acids Res 2019
16
50

The regulation and functions of the nuclear RNA exosome complex.
Cornelia Kilchert, Sina Wittmann, Lidia Vasiljeva. Nat Rev Mol Cell Biol 2016
180
18

RNase H enables efficient repair of R-loop induced DNA damage.
Jeremy D Amon, Douglas Koshland. Elife 2016
68
18

Next-generation sequencing reveals two populations of damage-induced small RNAs at endogenous DNA double-strand breaks.
Franziska Bonath, Judit Domingo-Prim, Marcel Tarbier, Marc R Friedländer, Neus Visa. Nucleic Acids Res 2018
33
24

The role of RNA and RNA-related proteins in the regulation of DNA double strand break repair pathway choice.
Sonia Jimeno, Rosario Prados-Carvajal, Pablo Huertas. DNA Repair (Amst) 2019
15
53


Ribonuclease H: the enzymes in eukaryotes.
Susana M Cerritelli, Robert J Crouch. FEBS J 2009
419
18


A genome-wide homologous recombination screen identifies the RNA-binding protein RBMX as a component of the DNA-damage response.
Britt Adamson, Agata Smogorzewska, Frederic D Sigoillot, Randall W King, Stephen J Elledge. Nat Cell Biol 2012
266
15

RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination.
Claudia Ribeiro de Almeida, Somdutta Dhir, Ashish Dhir, Amin E Moghaddam, Quentin Sattentau, Anton Meinhart, Nicholas J Proudfoot. Mol Cell 2018
72
15

DNA damage triggers SAF-A and RNA biogenesis factors exclusion from chromatin coupled to R-loops removal.
Sébastien Britton, Emma Dernoncourt, Christine Delteil, Carine Froment, Odile Schiltz, Bernard Salles, Philippe Frit, Patrick Calsou. Nucleic Acids Res 2014
101
15

MRE11-RAD50-NBS1 promotes Fanconi Anemia R-loop suppression at transcription-replication conflicts.
Emily Yun-Chia Chang, Shuhe Tsai, Maria J Aristizabal, James P Wells, Yan Coulombe, Franciele F Busatto, Yujia A Chan, Arun Kumar, Yi Dan Zhu, Alan Ying-Hsu Wang,[...]. Nat Commun 2019
23
30



How RNA transcripts coordinate DNA recombination and repair.
Shane McDevitt, Timur Rusanov, Tatiana Kent, Gurushankar Chandramouly, Richard T Pomerantz. Nat Commun 2018
29
20

Ago2 facilitates Rad51 recruitment and DNA double-strand break repair by homologous recombination.
Min Gao, Wei Wei, Ming-Ming Li, Yong-Sheng Wu, Zhaoqing Ba, Kang-Xuan Jin, Miao-Miao Li, You-Qi Liao, Samir Adhikari, Zechen Chong,[...]. Cell Res 2014
118
13


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.