A citation-based method for searching scientific literature

Chuna Kim, Jun Kim, Sunghyun Kim, Daniel E Cook, Kathryn S Evans, Erik C Andersen, Junho Lee. Genome Res 2019
Times Cited: 16







List of co-cited articles
122 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


CeNDR, the Caenorhabditis elegans natural diversity resource.
Daniel E Cook, Stefan Zdraljevic, Joshua P Roberts, Erik C Andersen. Nucleic Acids Res 2017
92
43

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
37

Recompleting the Caenorhabditis elegans genome.
Jun Yoshimura, Kazuki Ichikawa, Massa J Shoura, Karen L Artiles, Idan Gabdank, Lamia Wahba, Cheryl L Smith, Mark L Edgley, Ann E Rougvie, Andrew Z Fire,[...]. Genome Res 2019
30
31

Remarkably Divergent Regions Punctuate the Genome Assembly of the Caenorhabditis elegans Hawaiian Strain CB4856.
Owen A Thompson, L Basten Snoek, Harm Nijveen, Mark G Sterken, Rita J M Volkers, Rachel Brenchley, Arjen Van't Hof, Roel P J Bevers, Andrew R Cossins, Itai Yanai,[...]. Genetics 2015
58
31

Recombinational landscape and population genomics of Caenorhabditis elegans.
Matthew V Rockman, Leonid Kruglyak. PLoS Genet 2009
230
31

Selection at linked sites shapes heritable phenotypic variation in C. elegans.
Matthew V Rockman, Sonja S Skrovanek, Leonid Kruglyak. Science 2010
142
31

Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation.
Sergey Koren, Brian P Walenz, Konstantin Berlin, Jason R Miller, Nicholas H Bergman, Adam M Phillippy. Genome Res 2017
31





WormBase 2017: molting into a new stage.
Raymond Y N Lee, Kevin L Howe, Todd W Harris, Valerio Arnaboldi, Scott Cain, Juancarlos Chan, Wen J Chen, Paul Davis, Sibyl Gao, Christian Grove,[...]. Nucleic Acids Res 2018
109
18

A genome-wide library of CB4856/N2 introgression lines of Caenorhabditis elegans.
Agnieszka Doroszuk, L Basten Snoek, Emilie Fradin, Joost Riksen, Jan Kammenga. Nucleic Acids Res 2009
62
18


The natural history of Caenorhabditis elegans.
Marie-Anne Félix, Christian Braendle. Curr Biol 2010
231
18

Chromosome-scale selective sweeps shape Caenorhabditis elegans genomic diversity.
Erik C Andersen, Justin P Gerke, Joshua A Shapiro, Jonathan R Crissman, Rajarshi Ghosh, Joshua S Bloom, Marie-Anne Félix, Leonid Kruglyak. Nat Genet 2012
215
18

Quantitative mapping of a digenic behavioral trait implicates globin variation in C. elegans sensory behaviors.
Patrick T McGrath, Matthew V Rockman, Manuel Zimmer, Heeun Jang, Evan Z Macosko, Leonid Kruglyak, Cornelia I Bargmann. Neuron 2009
162
18

Shared Genomic Regions Underlie Natural Variation in Diverse Toxin Responses.
Kathryn S Evans, Shannon C Brady, Joshua S Bloom, Robyn E Tanny, Daniel E Cook, Sarah E Giuliani, Stephen W Hippleheuser, Mostafa Zamanian, Erik C Andersen. Genetics 2018
15
20

The laboratory domestication of Caenorhabditis elegans.
Mark G Sterken, L Basten Snoek, Jan E Kammenga, Erik C Andersen. Trends Genet 2015
87
18

Outbreeding depression with low genetic variation in selfing Caenorhabditis nematodes.
Clotilde Gimond, Richard Jovelin, Shery Han, Céline Ferrari, Asher D Cutter, Christian Braendle. Evolution 2013
30
18

On the origin of the eukaryotic chromosome: the role of noncanonical DNA structures in telomere evolution.
Miguel Garavís, Carlos González, Alfredo Villasante. Genome Biol Evol 2013
29
18

Retrotransposons that maintain chromosome ends.
Mary-Lou Pardue, P G DeBaryshe. Proc Natl Acad Sci U S A 2011
64
18

Telomerase lost?
James M Mason, Thomas A Randall, Radmila Capkova Frydrychova. Chromosoma 2016
34
18


Rapid expansion and functional divergence of subtelomeric gene families in yeasts.
Chris A Brown, Andrew W Murray, Kevin J Verstrepen. Curr Biol 2010
180
18

Contrasting evolutionary genome dynamics between domesticated and wild yeasts.
Jia-Xing Yue, Jing Li, Louise Aigrain, Johan Hallin, Karl Persson, Karen Oliver, Anders Bergström, Paul Coupland, Jonas Warringer, Marco Cosentino Lagomarsino,[...]. Nat Genet 2017
123
18

Break-induced telomere synthesis underlies alternative telomere maintenance.
Robert L Dilley, Priyanka Verma, Nam Woo Cho, Harrison D Winters, Anne R Wondisford, Roger A Greenberg. Nature 2016
194
18

BLAST+: architecture and applications.
Christiam Camacho, George Coulouris, Vahram Avagyan, Ning Ma, Jason Papadopoulos, Kevin Bealer, Thomas L Madden. BMC Bioinformatics 2009
18

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Felipe A Simão, Robert M Waterhouse, Panagiotis Ioannidis, Evgenia V Kriventseva, Evgeny M Zdobnov. Bioinformatics 2015
18

Pilon: an integrated tool for comprehensive microbial variant detection and genome assembly improvement.
Bruce J Walker, Thomas Abeel, Terrance Shea, Margaret Priest, Amr Abouelliel, Sharadha Sakthikumar, Christina A Cuomo, Qiandong Zeng, Jennifer Wortman, Sarah K Young,[...]. PLoS One 2014
18

A variant in the neuropeptide receptor npr-1 is a major determinant of Caenorhabditis elegans growth and physiology.
Erik C Andersen, Joshua S Bloom, Justin P Gerke, Leonid Kruglyak. PLoS Genet 2014
71
18


A wild C. elegans strain has enhanced epithelial immunity to a natural microsporidian parasite.
Keir M Balla, Erik C Andersen, Leonid Kruglyak, Emily R Troemel. PLoS Pathog 2015
31
18

Widespread genetic incompatibility in C. elegans maintained by balancing selection.
Hannah S Seidel, Matthew V Rockman, Leonid Kruglyak. Science 2008
175
18

MinION-based long-read sequencing and assembly extends the Caenorhabditis elegans reference genome.
John R Tyson, Nigel J O'Neil, Miten Jain, Hugh E Olsen, Philip Hieter, Terrance P Snutch. Genome Res 2018
57
12

Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel.
Luke M Noble, Ivo Chelo, Thiago Guzella, Bruno Afonso, David D Riccardi, Patrick Ammerman, Adel Dayarian, Sara Carvalho, Anna Crist, Ania Pino-Querido,[...]. Genetics 2017
22
12

The genetics of quantitative traits: challenges and prospects.
Trudy F C Mackay, Eric A Stone, Julien F Ayroles. Nat Rev Genet 2009
617
12

Genetic architecture of complex traits: large phenotypic effects and pervasive epistasis.
Haifeng Shao, Lindsay C Burrage, David S Sinasac, Annie E Hill, Sheila R Ernest, William O'Brien, Hayden-William Courtland, Karl J Jepsen, Andrew Kirby, E J Kulbokas,[...]. Proc Natl Acad Sci U S A 2008
180
12

Genetic mapping of variation in dauer larvae development in growing populations of Caenorhabditis elegans.
J W M Green, L B Snoek, J E Kammenga, S C Harvey. Heredity (Edinb) 2013
27
12


Epistasis and balanced polymorphism influencing complex trait variation.
Juergen Kroymann, Thomas Mitchell-Olds. Nature 2005
187
12

Natural variation in a single amino acid substitution underlies physiological responses to topoisomerase II poisons.
Stefan Zdraljevic, Christine Strand, Hannah S Seidel, Daniel E Cook, John G Doench, Erik C Andersen. PLoS Genet 2017
25
12


A Powerful New Quantitative Genetics Platform, Combining Caenorhabditis elegans High-Throughput Fitness Assays with a Large Collection of Recombinant Strains.
Erik C Andersen, Tyler C Shimko, Jonathan R Crissman, Rajarshi Ghosh, Joshua S Bloom, Hannah S Seidel, Justin P Gerke, Leonid Kruglyak. G3 (Bethesda) 2015
47
12

Dissecting the architecture of a quantitative trait locus in yeast.
Lars M Steinmetz, Himanshu Sinha, Dan R Richards, Jamie I Spiegelman, Peter J Oefner, John H McCusker, Ronald W Davis. Nature 2002
377
12

C. elegans outside the Petri dish.
Lise Frézal, Marie-Anne Félix. Elife 2015
159
12

Widespread genomic incompatibilities in Caenorhabditis elegans.
L Basten Snoek, Helen E Orbidans, Jana J Stastna, Aafke Aartse, Miriam Rodriguez, Joost A G Riksen, Jan E Kammenga, Simon C Harvey. G3 (Bethesda) 2014
28
12

An Expanded View of Complex Traits: From Polygenic to Omnigenic.
Evan A Boyle, Yang I Li, Jonathan K Pritchard. Cell 2017
956
12

Parallel evolution of domesticated Caenorhabditis species targets pheromone receptor genes.
Patrick T McGrath, Yifan Xu, Michael Ailion, Jennifer L Garrison, Rebecca A Butcher, Cornelia I Bargmann. Nature 2011
151
12

More than the sum of its parts: a complex epistatic network underlies natural variation in thermal preference behavior in Caenorhabditis elegans.
Bryn E Gaertner, Michelle D Parmenter, Matthew V Rockman, Leonid Kruglyak, Patrick C Phillips. Genetics 2012
42
12


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.