A citation-based method for searching scientific literature

Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito, Richard M Gronostajski, Elana J Fertig, Loyal A Goff, Seth Blackshaw. Neuron 2019
Times Cited: 95







List of co-cited articles
1116 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Highly Parallel Genome-wide Expression Profiling of Individual Cells Using Nanoliter Droplets.
Evan Z Macosko, Anindita Basu, Rahul Satija, James Nemesh, Karthik Shekhar, Melissa Goldman, Itay Tirosh, Allison R Bialas, Nolan Kamitaki, Emily M Martersteck,[...]. Cell 2015
33

Single cell transcriptome profiling of retinal ganglion cells identifies cellular subtypes.
Bruce A Rheaume, Amyeo Jereen, Mohan Bolisetty, Muhammad S Sajid, Yue Yang, Kathleen Renna, Lili Sun, Paul Robson, Ephraim F Trakhtenberg. Nat Commun 2018
137
25


Integrating single-cell transcriptomic data across different conditions, technologies, and species.
Andrew Butler, Paul Hoffman, Peter Smibert, Efthymia Papalexi, Rahul Satija. Nat Biotechnol 2018
20

Comprehensive Classification of Retinal Bipolar Neurons by Single-Cell Transcriptomics.
Karthik Shekhar, Sylvain W Lapan, Irene E Whitney, Nicholas M Tran, Evan Z Macosko, Monika Kowalczyk, Xian Adiconis, Joshua Z Levin, James Nemesh, Melissa Goldman,[...]. Cell 2016
448
18


The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells.
Cole Trapnell, Davide Cacchiarelli, Jonna Grimsby, Prapti Pokharel, Shuqiang Li, Michael Morse, Niall J Lennon, Kenneth J Livak, Tarjei S Mikkelsen, John L Rinn. Nat Biotechnol 2014
17

Molecular Anatomy of the Developing Human Retina.
Akina Hoshino, Rinki Ratnapriya, Matthew J Brooks, Vijender Chaitankar, Matthew S Wilken, Chi Zhang, Margaret R Starostik, Linn Gieser, Anna La Torre, Mario Nishio,[...]. Dev Cell 2017
89
17

Molecular Classification and Comparative Taxonomics of Foveal and Peripheral Cells in Primate Retina.
Yi-Rong Peng, Karthik Shekhar, Wenjun Yan, Dustin Herrmann, Anna Sappington, Gregory S Bryman, Tavé van Zyl, Michael Tri H Do, Aviv Regev, Joshua R Sanes. Cell 2019
111
16

Dissecting the transcriptome landscape of the human fetal neural retina and retinal pigment epithelium by single-cell RNA-seq analysis.
Yuqiong Hu, Xiaoye Wang, Boqiang Hu, Yunuo Mao, Yidong Chen, Liying Yan, Jun Yong, Ji Dong, Yuan Wei, Wei Wang,[...]. PLoS Biol 2019
36
44

The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis.
Issam Aldiri, Beisi Xu, Lu Wang, Xiang Chen, Daniel Hiler, Lyra Griffiths, Marc Valentine, Abbas Shirinifard, Suresh Thiagarajan, Andras Sablauer,[...]. Neuron 2017
97
14

A single-cell transcriptome atlas of the adult human retina.
Samuel W Lukowski, Camden Y Lo, Alexei A Sharov, Quan Nguyen, Lyujie Fang, Sandy Sc Hung, Ling Zhu, Ting Zhang, Ulrike Grünert, Tu Nguyen,[...]. EMBO J 2019
56
25

Single-Cell Transcriptomic Comparison of Human Fetal Retina, hPSC-Derived Retinal Organoids, and Long-Term Retinal Cultures.
Akshayalakshmi Sridhar, Akina Hoshino, Connor R Finkbeiner, Alex Chitsazan, Li Dai, Alexandra K Haugan, Kayla M Eschenbacher, Dana L Jackson, Cole Trapnell, Olivia Bermingham-McDonogh,[...]. Cell Rep 2020
40
35

Genomic analysis of mouse retinal development.
Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho,[...]. PLoS Biol 2004
435
13

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
13

Cell fate determination in the vertebrate retina.
C L Cepko, C P Austin, X Yang, M Alexiades, D Ezzeddine. Proc Natl Acad Sci U S A 1996
747
13

Deconstructing Retinal Organoids: Single Cell RNA-Seq Reveals the Cellular Components of Human Pluripotent Stem Cell-Derived Retina.
Joseph Collin, Rachel Queen, Darin Zerti, Birthe Dorgau, Rafiqul Hussain, Jonathan Coxhead, Simon Cockell, Majlinda Lako. Stem Cells 2019
39
33

Thyroid hormone signaling specifies cone subtypes in human retinal organoids.
Kiara C Eldred, Sarah E Hadyniak, Katarzyna A Hussey, Boris Brenerman, Ping-Wu Zhang, Xitiz Chamling, Valentin M Sluch, Derek S Welsbie, Samer Hattar, James Taylor,[...]. Science 2018
67
17




Single-Cell Profiles of Retinal Ganglion Cells Differing in Resilience to Injury Reveal Neuroprotective Genes.
Nicholas M Tran, Karthik Shekhar, Irene E Whitney, Anne Jacobi, Inbal Benhar, Guosong Hong, Wenjun Yan, Xian Adiconis, McKinzie E Arnold, Jung Min Lee,[...]. Neuron 2019
84
14

Cell fate determination in the vertebrate retina.
Erin A Bassett, Valerie A Wallace. Trends Neurosci 2012
157
11

A conserved regulatory logic controls temporal identity in mouse neural progenitors.
Pierre Mattar, Johan Ericson, Seth Blackshaw, Michel Cayouette. Neuron 2015
65
16

Reversed graph embedding resolves complex single-cell trajectories.
Xiaojie Qiu, Qi Mao, Ying Tang, Li Wang, Raghav Chawla, Hannah A Pliner, Cole Trapnell. Nat Methods 2017
688
11

Generation, transcriptome profiling, and functional validation of cone-rich human retinal organoids.
Sangbae Kim, Albert Lowe, Rachayata Dharmat, Seunghoon Lee, Leah A Owen, Jun Wang, Akbar Shakoor, Yumei Li, Denise J Morgan, Andre A Hejazi,[...]. Proc Natl Acad Sci U S A 2019
42
26

Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
29
37

Transcriptional regulation of photoreceptor development and homeostasis in the mammalian retina.
Anand Swaroop, Douglas Kim, Douglas Forrest. Nat Rev Neurosci 2010
319
10


Timing and topography of cell genesis in the rat retina.
David H Rapaport, Lily L Wong, Eric D Wood, Douglas Yasumura, Matthew M LaVail. J Comp Neurol 2004
263
10

Molecular characterization of foveal versus peripheral human retina by single-cell RNA sequencing.
A P Voigt, S S Whitmore, M J Flamme-Wiese, M J Riker, L A Wiley, B A Tucker, E M Stone, R F Mullins, T E Scheetz. Exp Eye Res 2019
38
26

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
10

Reconstruction of rat retinal progenitor cell lineages in vitro reveals a surprising degree of stochasticity in cell fate decisions.
Francisco L A F Gomes, Gen Zhang, Felix Carbonell, José A Correa, William A Harris, Benjamin D Simons, Michel Cayouette. Development 2011
106
10

Gene regulation logic in retinal ganglion cell development: Isl1 defines a critical branch distinct from but overlapping with Pou4f2.
Xiuqian Mu, Xueyao Fu, Phillip D Beremand, Terry L Thomas, William H Klein. Proc Natl Acad Sci U S A 2008
103
10

Math5 is required for retinal ganglion cell and optic nerve formation.
N L Brown, S Patel, J Brzezinski, T Glaser. Development 2001
363
10

Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
64
14

Ptf1a determines horizontal and amacrine cell fates during mouse retinal development.
Yoshio Fujitani, Shuko Fujitani, Huijun Luo, Feng Qiu, Jared Burlison, Qiaoming Long, Yoshiya Kawaguchi, Helena Edlund, Raymond J MacDonald, Takahisa Furukawa,[...]. Development 2006
165
9

RNA velocity of single cells.
Gioele La Manno, Ruslan Soldatov, Amit Zeisel, Emelie Braun, Hannah Hochgerner, Viktor Petukhov, Katja Lidschreiber, Maria E Kastriti, Peter Lönnerberg, Alessandro Furlan,[...]. Nature 2018
588
9

Single-cell mRNA quantification and differential analysis with Census.
Xiaojie Qiu, Andrew Hill, Jonathan Packer, Dejun Lin, Yi-An Ma, Cole Trapnell. Nat Methods 2017
372
9

An integrated transcriptional analysis of the developing human retina.
Carla B Mellough, Roman Bauer, Joseph Collin, Birthe Dorgau, Darin Zerti, David W P Dolan, Carl M Jones, Osagie G Izuogu, Min Yu, Dean Hallam,[...]. Development 2019
30
30

The functional diversity of retinal ganglion cells in the mouse.
Tom Baden, Philipp Berens, Katrin Franke, Miroslav Román Rosón, Matthias Bethge, Thomas Euler. Nature 2016
369
9

Two transcription factors, Pou4f2 and Isl1, are sufficient to specify the retinal ganglion cell fate.
Fuguo Wu, Tadeusz J Kaczynski, Santhosh Sethuramanujam, Renzhong Li, Varsha Jain, Malcolm Slaughter, Xiuqian Mu. Proc Natl Acad Sci U S A 2015
53
16

Ikaros confers early temporal competence to mouse retinal progenitor cells.
Jimmy Elliott, Christine Jolicoeur, Vasanth Ramamurthy, Michel Cayouette. Neuron 2008
119
9

Single-cell transcriptional logic of cell-fate specification and axon guidance in early-born retinal neurons.
Quentin Lo Giudice, Marion Leleu, Gioele La Manno, Pierre J Fabre. Development 2019
16
56

Generation of three-dimensional retinal tissue with functional photoreceptors from human iPSCs.
Xiufeng Zhong, Christian Gutierrez, Tian Xue, Christopher Hampton, M Natalia Vergara, Li-Hui Cao, Ann Peters, Tea Soon Park, Elias T Zambidis, Jason S Meyer,[...]. Nat Commun 2014
397
9

Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
398
9

How variable clones build an invariant retina.
Jie He, Gen Zhang, Alexandra D Almeida, Michel Cayouette, Benjamin D Simons, William A Harris. Neuron 2012
133
9

Math5 encodes a murine basic helix-loop-helix transcription factor expressed during early stages of retinal neurogenesis.
N L Brown, S Kanekar, M L Vetter, P K Tucker, D L Gemza, T Glaser. Development 1998
248
9




Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.