A citation-based method for searching scientific literature

Aparna Kishor, Sarah E Fritz, J Robert Hogg. Wiley Interdiscip Rev RNA 2019
Times Cited: 35







List of co-cited articles
442 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Quality and quantity control of gene expression by nonsense-mediated mRNA decay.
Tatsuaki Kurosaki, Maximilian W Popp, Lynne E Maquat. Nat Rev Mol Cell Biol 2019
183
42



Upf1 senses 3'UTR length to potentiate mRNA decay.
J Robert Hogg, Stephen P Goff. Cell 2010
217
28


Nonsense-Mediated mRNA Decay Begins Where Translation Ends.
Evangelos D Karousis, Oliver Mühlemann. Cold Spring Harb Perspect Biol 2019
62
25

Nonsense-mediated mRNA decay: an intricate machinery that shapes transcriptomes.
Søren Lykke-Andersen, Torben Heick Jensen. Nat Rev Mol Cell Biol 2015
374
22

Beyond quality control: The role of nonsense-mediated mRNA decay (NMD) in regulating gene expression.
Sofia Nasif, Lara Contu, Oliver Mühlemann. Semin Cell Dev Biol 2018
65
22

Binding of a novel SMG-1-Upf1-eRF1-eRF3 complex (SURF) to the exon junction complex triggers Upf1 phosphorylation and nonsense-mediated mRNA decay.
Isao Kashima, Akio Yamashita, Natsuko Izumi, Naoyuki Kataoka, Ryo Morishita, Shinichi Hoshino, Mutsuhito Ohno, Gideon Dreyfuss, Shigeo Ohno. Genes Dev 2006
401
22


Posttranscriptional gene regulation by spatial rearrangement of the 3' untranslated region.
Andrea B Eberle, Lukas Stalder, Hansruedi Mathys, Rodolfo Zamudio Orozco, Oliver Mühlemann. PLoS Biol 2008
207
22

Transcriptome-wide identification of NMD-targeted human mRNAs reveals extensive redundancy between SMG6- and SMG7-mediated degradation pathways.
Martino Colombo, Evangelos D Karousis, Joël Bourquin, Rémy Bruggmann, Oliver Mühlemann. RNA 2017
70
22

Global analyses of UPF1 binding and function reveal expanded scope of nonsense-mediated mRNA decay.
Jessica A Hurt, Alex D Robertson, Christopher B Burge. Genome Res 2013
149
20

Molecular mechanisms for the RNA-dependent ATPase activity of Upf1 and its regulation by Upf2.
Sutapa Chakrabarti, Uma Jayachandran, Fabien Bonneau, Francesca Fiorini, Claire Basquin, Silvia Domcke, Hervé Le Hir, Elena Conti. Mol Cell 2011
158
20

Mechanism and regulation of the nonsense-mediated decay pathway.
Nele Hug, Dasa Longman, Javier F Cáceres. Nucleic Acids Res 2016
240
20

Hyperphosphorylation amplifies UPF1 activity to resolve stalls in nonsense-mediated mRNA decay.
Sébastien Durand, Tobias M Franks, Jens Lykke-Andersen. Nat Commun 2016
38
20

Nonsense surveillance regulates expression of diverse classes of mammalian transcripts and mutes genomic noise.
Joshua T Mendell, Neda A Sharifi, Jennifer L Meyers, Francisco Martinez-Murillo, Harry C Dietz. Nat Genet 2004
590
20

Single-Molecule Imaging Uncovers Rules Governing Nonsense-Mediated mRNA Decay.
Tim A Hoek, Deepak Khuperkar, Rik G H Lindeboom, Stijn Sonneveld, Bram M P Verhagen, Sanne Boersma, Michiel Vermeulen, Marvin E Tanenbaum. Mol Cell 2019
46
20

How to get away with nonsense: Mechanisms and consequences of escape from nonsense-mediated RNA decay.
Michael C Dyle, Divya Kolakada, Michael A Cortazar, Sujatha Jagannathan. Wiley Interdiscip Rev RNA 2020
26
23

NMD factors UPF2 and UPF3 bridge UPF1 to the exon junction complex and stimulate its RNA helicase activity.
Hala Chamieh, Lionel Ballut, Fabien Bonneau, Hervé Le Hir. Nat Struct Mol Biol 2008
197
17

Translation-dependent displacement of UPF1 from coding sequences causes its enrichment in 3' UTRs.
David Zünd, Andreas R Gruber, Mihaela Zavolan, Oliver Mühlemann. Nat Struct Mol Biol 2013
102
17

Dual function of UPF3B in early and late translation termination.
Gabriele Neu-Yilik, Etienne Raimondeau, Boris Eliseev, Lahari Yeramala, Beate Amthor, Aurélien Deniaud, Karine Huard, Kathrin Kerschgens, Matthias W Hentze, Christiane Schaffitzel,[...]. EMBO J 2017
45
17

Exon-junction complex components specify distinct routes of nonsense-mediated mRNA decay with differential cofactor requirements.
Niels H Gehring, Joachim B Kunz, Gabriele Neu-Yilik, Stephen Breit, Marcelo H Viegas, Matthias W Hentze, Andreas E Kulozik. Mol Cell 2005
222
17

CLIP-seq of eIF4AIII reveals transcriptome-wide mapping of the human exon junction complex.
Jérôme Saulière, Valentine Murigneux, Zhen Wang, Emélie Marquenet, Isabelle Barbosa, Olivier Le Tonquèze, Yann Audic, Luc Paillard, Hugues Roest Crollius, Hervé Le Hir. Nat Struct Mol Biol 2012
129
17

A faux 3'-UTR promotes aberrant termination and triggers nonsense-mediated mRNA decay.
Nadia Amrani, Robin Ganesan, Stephanie Kervestin, David A Mangus, Shubhendu Ghosh, Allan Jacobson. Nature 2004
352
17

The rules and impact of nonsense-mediated mRNA decay in human cancers.
Rik G H Lindeboom, Fran Supek, Ben Lehner. Nat Genet 2016
172
17

Nonsense-mediated mRNA decay in humans at a glance.
Tatsuaki Kurosaki, Lynne E Maquat. J Cell Sci 2016
192
14

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.
Suzanne R Lee, Gabriel A Pratt, Fernando J Martinez, Gene W Yeo, Jens Lykke-Andersen. Mol Cell 2015
60
14

Phosphorylation of hUPF1 induces formation of mRNA surveillance complexes containing hSMG-5 and hSMG-7.
Tetsuo Ohnishi, Akio Yamashita, Isao Kashima, Thomas Schell, Kirk R Anders, Andrew Grimson, Takahisa Hachiya, Matthias W Hentze, Philip Anderson, Shigeo Ohno. Mol Cell 2003
235
14

hUPF2 silencing identifies physiologic substrates of mammalian nonsense-mediated mRNA decay.
Jürgen Wittmann, Elly M Hol, Hans-Martin Jäck. Mol Cell Biol 2006
175
14




SMG-8 and SMG-9, two novel subunits of the SMG-1 complex, regulate remodeling of the mRNA surveillance complex during nonsense-mediated mRNA decay.
Akio Yamashita, Natsuko Izumi, Isao Kashima, Tetsuo Ohnishi, Bonnie Saari, Yukiko Katsuhata, Reiko Muramatsu, Tomoko Morita, Akihiro Iwamatsu, Takahisa Hachiya,[...]. Genes Dev 2009
160
14

Nonsense-mediated decay in genetic disease: friend or foe?
Jake N Miller, David A Pearce. Mutat Res Rev Mutat Res 2014
116
14


The exon junction complex as a node of post-transcriptional networks.
Hervé Le Hir, Jérôme Saulière, Zhen Wang. Nat Rev Mol Cell Biol 2016
124
14

SMG6 promotes endonucleolytic cleavage of nonsense mRNA in human cells.
Andrea B Eberle, Søren Lykke-Andersen, Oliver Mühlemann, Torben Heick Jensen. Nat Struct Mol Biol 2009
262
14

A post-translational regulatory switch on UPF1 controls targeted mRNA degradation.
Tatsuaki Kurosaki, Wencheng Li, Mainul Hoque, Maximilian W-L Popp, Dmitri N Ermolenko, Bin Tian, Lynne E Maquat. Genes Dev 2014
97
14

Insights into the assembly and architecture of a Staufen-mediated mRNA decay (SMD)-competent mRNP.
Manjeera Gowravaram, Juliane Schwarz, Sana K Khilji, Henning Urlaub, Sutapa Chakrabarti. Nat Commun 2019
13
38

Dissecting the functions of SMG5, SMG7, and PNRC2 in nonsense-mediated mRNA decay of human cells.
Pamela Nicholson, Asimina Gkratsou, Christoph Josi, Martino Colombo, Oliver Mühlemann. RNA 2018
17
29

Identification of SMG6 cleavage sites and a preferred RNA cleavage motif by global analysis of endogenous NMD targets in human cells.
Skye A Schmidt, Patricia L Foley, Dong-Hoon Jeong, Linda A Rymarquis, Francis Doyle, Scott A Tenenbaum, Joel G Belasco, Pamela J Green. Nucleic Acids Res 2015
64
14

Phospho-dependent and phospho-independent interactions of the helicase UPF1 with the NMD factors SMG5-SMG7 and SMG6.
Sutapa Chakrabarti, Fabien Bonneau, Steffen Schüssler, Elfriede Eppinger, Elena Conti. Nucleic Acids Res 2014
59
14

PABP enhances release factor recruitment and stop codon recognition during translation termination.
Alexandr Ivanov, Tatyana Mikhailova, Boris Eliseev, Lahari Yeramala, Elizaveta Sokolova, Denis Susorov, Alexey Shuvalov, Christiane Schaffitzel, Elena Alkalaeva. Nucleic Acids Res 2016
53
14


Human nonsense-mediated RNA decay initiates widely by endonucleolysis and targets snoRNA host genes.
Søren Lykke-Andersen, Yun Chen, Britt R Ardal, Berit Lilje, Johannes Waage, Albin Sandelin, Torben Heick Jensen. Genes Dev 2014
103
14

Human Upf1 is a highly processive RNA helicase and translocase with RNP remodelling activities.
Francesca Fiorini, Debjani Bagchi, Hervé Le Hir, Vincent Croquette. Nat Commun 2015
68
11

mRNP quality control goes regulatory.
Oliver Mühlemann, Torben Heick Jensen. Trends Genet 2012
34
11

Nonsense-mediated mRNA decay: novel mechanistic insights and biological impact.
Evangelos D Karousis, Sofia Nasif, Oliver Mühlemann. Wiley Interdiscip Rev RNA 2016
104
11

Alternative splicing as a regulator of development and tissue identity.
Francisco E Baralle, Jimena Giudice. Nat Rev Mol Cell Biol 2017
371
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.