A citation-based method for searching scientific literature

Adam P Croft, Joana Campos, Kathrin Jansen, Jason D Turner, Jennifer Marshall, Moustafa Attar, Loriane Savary, Corinna Wehmeyer, Amy J Naylor, Samuel Kemble, Jenefa Begum, Kerstin Dürholz, Harris Perlman, Francesca Barone, Helen M McGettrick, Douglas T Fearon, Kevin Wei, Soumya Raychaudhuri, Ilya Korsunsky, Michael B Brenner, Mark Coles, Stephen N Sansom, Andrew Filer, Christopher D Buckley. Nature 2019
Times Cited: 303







List of co-cited articles
795 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Defining inflammatory cell states in rheumatoid arthritis joint synovial tissues by integrating single-cell transcriptomics and mass cytometry.
Fan Zhang, Kevin Wei, Kamil Slowikowski, Chamith Y Fonseka, Deepak A Rao, Stephen Kelly, Susan M Goodman, Darren Tabechian, Laura B Hughes, Karen Salomon-Escoto,[...]. Nat Immunol 2019
402
45

Functionally distinct disease-associated fibroblast subsets in rheumatoid arthritis.
Fumitaka Mizoguchi, Kamil Slowikowski, Kevin Wei, Jennifer L Marshall, Deepak A Rao, Sook Kyung Chang, Hung N Nguyen, Erika H Noss, Jason D Turner, Brandon E Earp,[...]. Nat Commun 2018
225
42

Notch signalling drives synovial fibroblast identity and arthritis pathology.
Kevin Wei, Ilya Korsunsky, Jennifer L Marshall, Anqi Gao, Gerald F M Watts, Triin Major, Adam P Croft, Jordan Watts, Philip E Blazar, Jeffrey K Lange,[...]. Nature 2020
126
35

Distinct synovial tissue macrophage subsets regulate inflammation and remission in rheumatoid arthritis.
Stefano Alivernini, Lucy MacDonald, Aziza Elmesmari, Samuel Finlay, Barbara Tolusso, Maria Rita Gigante, Luca Petricca, Clara Di Mario, Laura Bui, Simone Perniola,[...]. Nat Med 2020
126
23

Locally renewing resident synovial macrophages provide a protective barrier for the joint.
Stephan Culemann, Anika Grüneboom, José Ángel Nicolás-Ávila, Daniela Weidner, Katrin Franziska Lämmle, Tobias Rothe, Juan A Quintana, Philipp Kirchner, Branislav Krljanac, Martin Eberhardt,[...]. Nature 2019
205
21

Single-cell RNA-seq of rheumatoid arthritis synovial tissue using low-cost microfluidic instrumentation.
William Stephenson, Laura T Donlin, Andrew Butler, Cristina Rozo, Bernadette Bracken, Ali Rashidfarrokhi, Susan M Goodman, Lionel B Ivashkiv, Vivian P Bykerk, Dana E Orange,[...]. Nat Commun 2018
160
18

HBEGF+ macrophages in rheumatoid arthritis induce fibroblast invasiveness.
David Kuo, Jennifer Ding, Ian S Cohn, Fan Zhang, Kevin Wei, Deepak A Rao, Cristina Rozo, Upneet K Sokhi, Sara Shanaj, David J Oliver,[...]. Sci Transl Med 2019
82
21

Molecular Portraits of Early Rheumatoid Arthritis Identify Clinical and Treatment Response Phenotypes.
Myles J Lewis, Michael R Barnes, Kevin Blighe, Katriona Goldmann, Sharmila Rana, Jason A Hackney, Nandhini Ramamoorthi, Christopher R John, David S Watson, Sarah K Kummerfeld,[...]. Cell Rep 2019
112
16

Rheumatoid arthritis.
Josef S Smolen, Daniel Aletaha, Anne Barton, Gerd R Burmester, Paul Emery, Gary S Firestein, Arthur Kavanaugh, Iain B McInnes, Daniel H Solomon, Vibeke Strand,[...]. Nat Rev Dis Primers 2018
763
15


Cross-tissue organization of the fibroblast lineage.
Matthew B Buechler, Rachana N Pradhan, Akshay T Krishnamurty, Christian Cox, Aslihan Karabacak Calviello, Amber W Wang, Yeqing Angela Yang, Lucinda Tam, Roger Caothien, Merone Roose-Girma,[...]. Nature 2021
111
12

Pathologically expanded peripheral T helper cell subset drives B cells in rheumatoid arthritis.
Deepak A Rao, Michael F Gurish, Jennifer L Marshall, Kamil Slowikowski, Chamith Y Fonseka, Yanyan Liu, Laura T Donlin, Lauren A Henderson, Kevin Wei, Fumitaka Mizoguchi,[...]. Nature 2017
472
11

The pathogenesis of rheumatoid arthritis.
Iain B McInnes, Georg Schett. N Engl J Med 2011
11


RNA Identification of PRIME Cells Predicting Rheumatoid Arthritis Flares.
Dana E Orange, Vicky Yao, Kirsty Sawicka, John Fak, Mayu O Frank, Salina Parveen, Nathalie E Blachere, Caryn Hale, Fan Zhang, Soumya Raychaudhuri,[...]. N Engl J Med 2020
57
17

Fibroblasts as immune regulators in infection, inflammation and cancer.
Sarah Davidson, Mark Coles, Tom Thomas, George Kollias, Burkhard Ludewig, Shannon Turley, Michael Brenner, Christopher D Buckley. Nat Rev Immunol 2021
57
17

Structural Remodeling of the Human Colonic Mesenchyme in Inflammatory Bowel Disease.
James Kinchen, Hannah H Chen, Kaushal Parikh, Agne Antanaviciute, Marta Jagielowicz, David Fawkner-Corbett, Neil Ashley, Laura Cubitt, Esther Mellado-Gomez, Moustafa Attar,[...]. Cell 2018
226
9

Comprehensive Integration of Single-Cell Data.
Tim Stuart, Andrew Butler, Paul Hoffman, Christoph Hafemeister, Efthymia Papalexi, William M Mauck, Yuhan Hao, Marlon Stoeckius, Peter Smibert, Rahul Satija. Cell 2019
9

Methods for high-dimensional analysis of cells dissociated from cryopreserved synovial tissue
Laura T Donlin, Deepak A Rao, Kevin Wei, Kamil Slowikowski, Mandy J McGeachy, Jason D Turner, Nida Meednu, Fumitaka Mizoguchi, Maria Gutierrez-Arcelus, David J Lieb,[...]. Arthritis Res Ther 2018
63
14

Rituximab versus tocilizumab in anti-TNF inadequate responder patients with rheumatoid arthritis (R4RA): 16-week outcomes of a stratified, biopsy-driven, multicentre, open-label, phase 4 randomised controlled trial.
Frances Humby, Patrick Durez, Maya H Buch, Myles J Lewis, Hasan Rizvi, Felice Rivellese, Alessandra Nerviani, Giovanni Giorli, Arti Mahto, Carlomaurizio Montecucco,[...]. Lancet 2021
54
16

Synovial cellular and molecular signatures stratify clinical response to csDMARD therapy and predict radiographic progression in early rheumatoid arthritis patients.
Frances Humby, Myles Lewis, Nandhini Ramamoorthi, Jason A Hackney, Michael R Barnes, Michele Bombardieri, A Francesca Setiadi, Stephen Kelly, Fabiola Bene, Maria DiCicco,[...]. Ann Rheum Dis 2019
111
8

Synovial phenotypes in rheumatoid arthritis correlate with response to biologic therapeutics.
Glynn Dennis, Cécile T J Holweg, Sarah K Kummerfeld, David F Choy, A Francesca Setiadi, Jason A Hackney, Peter M Haverty, Houston Gilbert, Wei Yu Lin, Lauri Diehl,[...]. Arthritis Res Ther 2014
215
8

Critical Role of Glucose Metabolism in Rheumatoid Arthritis Fibroblast-like Synoviocytes.
Ricard Garcia-Carbonell, Ajit S Divakaruni, Alessia Lodi, Ildefonso Vicente-Suarez, Arindam Saha, Hilde Cheroutre, Gerry R Boss, Stefano Tiziani, Anne N Murphy, Monica Guma. Arthritis Rheumatol 2016
137
8

Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis.
Christopher S Smillie, Moshe Biton, Jose Ordovas-Montanes, Keri M Sullivan, Grace Burgin, Daniel B Graham, Rebecca H Herbst, Noga Rogel, Michal Slyper, Julia Waldman,[...]. Cell 2019
350
8

Skin fibrosis. Identification and isolation of a dermal lineage with intrinsic fibrogenic potential.
Yuval Rinkevich, Graham G Walmsley, Michael S Hu, Zeshaan N Maan, Aaron M Newman, Micha Drukker, Michael Januszyk, Geoffrey W Krampitz, Geoffrey C Gurtner, H Peter Lorenz,[...]. Science 2015
359
7

Fast, sensitive and accurate integration of single-cell data with Harmony.
Ilya Korsunsky, Nghia Millard, Jean Fan, Kamil Slowikowski, Fan Zhang, Kevin Wei, Yuriy Baglaenko, Michael Brenner, Po-Ru Loh, Soumya Raychaudhuri. Nat Methods 2019
792
7

Synovial tissue signatures enhance clinical classification and prognostic/treatment response algorithms in early inflammatory arthritis and predict requirement for subsequent biological therapy: results from the pathobiology of early arthritis cohort (PEAC).
Gloria Lliso-Ribera, Frances Humby, Myles Lewis, Alessandra Nerviani, Daniele Mauro, Felice Rivellese, Stephen Kelly, Rebecca Hands, Fabiola Bene, Nandhini Ramamoorthi,[...]. Ann Rheum Dis 2019
45
15


Immunopathogenesis of Rheumatoid Arthritis.
Gary S Firestein, Iain B McInnes. Immunity 2017
472
7

RANKL expressed on synovial fibroblasts is primarily responsible for bone erosions during joint inflammation.
Lynett Danks, Noriko Komatsu, Matteo M Guerrini, Shinichiro Sawa, Marietta Armaka, George Kollias, Tomoki Nakashima, Hiroshi Takayanagi. Ann Rheum Dis 2016
119
7

Epigenetically-driven anatomical diversity of synovial fibroblasts guides joint-specific fibroblast functions.
Mojca Frank-Bertoncelj, Michelle Trenkmann, Kerstin Klein, Emmanuel Karouzakis, Hubert Rehrauer, Anna Bratus, Christoph Kolling, Maria Armaka, Andrew Filer, Beat A Michel,[...]. Nat Commun 2017
85
8

The complement system drives local inflammatory tissue priming by metabolic reprogramming of synovial fibroblasts.
Jasna Friščić, Martin Böttcher, Christiane Reinwald, Heiko Bruns, Benjamin Wirth, Samantha-Josefine Popp, Kellie Irene Walker, Jochen A Ackermann, Xi Chen, Jason Turner,[...]. Immunity 2021
33
21

Collagen-producing lung cell atlas identifies multiple subsets with distinct localization and relevance to fibrosis.
Tatsuya Tsukui, Kai-Hui Sun, Joseph B Wetter, John R Wilson-Kanamori, Lisa A Hazelwood, Neil C Henderson, Taylor S Adams, Jonas C Schupp, Sergio D Poli, Ivan O Rosas,[...]. Nat Commun 2020
124
7

Single-Cell RNA Sequencing Reveals Stromal Evolution into LRRC15+ Myofibroblasts as a Determinant of Patient Response to Cancer Immunotherapy.
Claudia X Dominguez, Sören Müller, Shilpa Keerthivasan, Hartmut Koeppen, Jeffrey Hung, Sarah Gierke, Beatrice Breart, Oded Foreman, Travis W Bainbridge, Alessandra Castiglioni,[...]. Cancer Discov 2020
211
6

Single-cell analysis reveals fibroblast heterogeneity and myeloid-derived adipocyte progenitors in murine skin wounds.
Christian F Guerrero-Juarez, Priya H Dedhia, Suoqin Jin, Rolando Ruiz-Vega, Dennis Ma, Yuchen Liu, Kosuke Yamaga, Olga Shestova, Denise L Gay, Zaixin Yang,[...]. Nat Commun 2019
187
6

Distinct fibroblast lineages determine dermal architecture in skin development and repair.
Ryan R Driskell, Beate M Lichtenberger, Esther Hoste, Kai Kretzschmar, Ben D Simons, Marika Charalambous, Sacri R Ferron, Yann Herault, Guillaume Pavlovic, Anne C Ferguson-Smith,[...]. Nature 2013
634
6


A Pauci-Immune Synovial Pathotype Predicts Inadequate Response to TNFα-Blockade in Rheumatoid Arthritis Patients.
Alessandra Nerviani, Maria Di Cicco, Arti Mahto, Gloria Lliso-Ribera, Felice Rivellese, Georgina Thorborn, Rebecca Hands, Mattia Bellan, Daniele Mauro, Marie-Astrid Boutet,[...]. Front Immunol 2020
29
20

Massively parallel digital transcriptional profiling of single cells.
Grace X Y Zheng, Jessica M Terry, Phillip Belgrader, Paul Ryvkin, Zachary W Bent, Ryan Wilson, Solongo B Ziraldo, Tobias D Wheeler, Geoff P McDermott, Junjie Zhu,[...]. Nat Commun 2017
6

Macrophage heterogeneity in the context of rheumatoid arthritis.
Irina A Udalova, Alberto Mantovani, Marc Feldmann. Nat Rev Rheumatol 2016
298
6

GC/TOF-MS-based metabolomic profiling in cultured fibroblast-like synoviocytes from rheumatoid arthritis.
Joong Kyong Ahn, Sooah Kim, Jiwon Hwang, Jungyeon Kim, Kyoung Heon Kim, Hoon-Suk Cha. Joint Bone Spine 2016
50
12

Disentangling inflammatory from fibrotic disease activity by fibroblast activation protein imaging.
Christian Schmidkonz, Simon Rauber, Armin Atzinger, Rahul Agarwal, Theresa Ida Götz, Alina Soare, Michael Cordes, Olaf Prante, Christina Bergmann, Arnd Kleyer,[...]. Ann Rheum Dis 2020
55
10

Single-cell transcriptome analysis of human skin identifies novel fibroblast subpopulation and enrichment of immune subsets in atopic dermatitis.
Helen He, Hemant Suryawanshi, Pavel Morozov, Jesús Gay-Mimbrera, Ester Del Duca, Hyun Je Kim, Naoya Kameyama, Yeriel Estrada, Evan Der, James G Krueger,[...]. J Allergy Clin Immunol 2020
111
6

Genetics of rheumatoid arthritis contributes to biology and drug discovery.
Yukinori Okada, Di Wu, Gosia Trynka, Towfique Raj, Chikashi Terao, Katsunori Ikari, Yuta Kochi, Koichiro Ohmura, Akari Suzuki, Shinji Yoshida,[...]. Nature 2014
6

Synovial tissue research: a state-of-the-art review.
Carl Orr, Elsa Vieira-Sousa, David L Boyle, Maya H Buch, Christopher D Buckley, Juan D Cañete, Anca I Catrina, Ernest H S Choy, Paul Emery, Ursula Fearon,[...]. Nat Rev Rheumatol 2017
113
6

Fibroblast pathology in inflammatory joint disease.
Lucy-Jayne Marsh, Samuel Kemble, Patricia Reis Nisa, Ruchir Singh, Adam P Croft. Immunol Rev 2021
11
54

Cadherin-11 in synovial lining formation and pathology in arthritis.
David M Lee, Hans P Kiener, Sandeep K Agarwal, Erika H Noss, Gerald F M Watts, Osamu Chisaka, Masatoshi Takeichi, Michael B Brenner. Science 2007
277
6

Fibroblast-Like Synoviocytes Glucose Metabolism as a Therapeutic Target in Rheumatoid Arthritis.
Patricia Gnieslaw de Oliveira, Mirian Farinon, Elsa Sanchez-Lopez, Shigeki Miyamoto, Monica Guma. Front Immunol 2019
45
13

EULAR recommendations for the management of rheumatoid arthritis with synthetic and biological disease-modifying antirheumatic drugs: 2019 update.
Josef S Smolen, Robert B M Landewé, Johannes W J Bijlsma, Gerd R Burmester, Maxime Dougados, Andreas Kerschbaumer, Iain B McInnes, Alexandre Sepriano, Ronald F van Vollenhoven, Maarten de Wit,[...]. Ann Rheum Dis 2020
990
6

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2.
Michael I Love, Wolfgang Huber, Simon Anders. Genome Biol 2014
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.