A citation-based method for searching scientific literature

Marta Bueno, Daniel Zank, Ivette Buendia-Roldán, Kaitlin Fiedler, Brenton G Mays, Diana Alvarez, John Sembrat, Brian Kimball, Jordan K Bullock, James L Martin, Mehdi Nouraie, Brett A Kaufman, Mauricio Rojas, Annie Pardo, Moisés Selman, Ana L Mora. PLoS One 2019
Times Cited: 27







List of co-cited articles
322 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


PINK1 deficiency impairs mitochondrial homeostasis and promotes lung fibrosis.
Marta Bueno, Yen-Chun Lai, Yair Romero, Judith Brands, Claudette M St Croix, Christelle Kamga, Catherine Corey, Jose D Herazo-Maya, John Sembrat, Janet S Lee,[...]. J Clin Invest 2015
264
59

ATF3 represses PINK1 gene transcription in lung epithelial cells to control mitochondrial homeostasis.
Marta Bueno, Judith Brands, Lauren Voltz, Kaitlin Fiedler, Brenton Mays, Claudette St Croix, John Sembrat, Rama K Mallampalli, Mauricio Rojas, Ana L Mora. Aging Cell 2018
48
48

Extracellular Mitochondrial DNA Is Generated by Fibroblasts and Predicts Death in Idiopathic Pulmonary Fibrosis.
Changwan Ryu, Huanxing Sun, Mridu Gulati, Jose D Herazo-Maya, Yonglin Chen, Awo Osafo-Addo, Caitlin Brandsdorfer, Julia Winkler, Christina Blaul, Jaden Faunce,[...]. Am J Respir Crit Care Med 2017
80
40

Mitochondria in the spotlight of aging and idiopathic pulmonary fibrosis.
Ana L Mora, Marta Bueno, Mauricio Rojas. J Clin Invest 2017
98
37

Epithelial cell mitochondrial dysfunction and PINK1 are induced by transforming growth factor-beta1 in pulmonary fibrosis.
Avignat S Patel, Jin Woo Song, Sarah G Chu, Kenji Mizumura, Juan C Osorio, Ying Shi, Souheil El-Chemaly, Chun Geun Lee, Ivan O Rosas, Jack A Elias,[...]. PLoS One 2015
105
37

SIRT3 deficiency promotes lung fibrosis by augmenting alveolar epithelial cell mitochondrial DNA damage and apoptosis.
Renea P Jablonski, Seok-Jo Kim, Paul Cheresh, David B Williams, Luisa Morales-Nebreda, Yuan Cheng, Anjana Yeldandi, Sangeeta Bhorade, Annie Pardo, Moises Selman,[...]. FASEB J 2017
59
33

Cellular senescence mediates fibrotic pulmonary disease.
Marissa J Schafer, Thomas A White, Koji Iijima, Andrew J Haak, Giovanni Ligresti, Elizabeth J Atkinson, Ann L Oberg, Jodie Birch, Hanna Salmonowicz, Yi Zhu,[...]. Nat Commun 2017
499
33

Telomerase mutations in families with idiopathic pulmonary fibrosis.
Mary Y Armanios, Julian J-L Chen, Joy D Cogan, Jonathan K Alder, Roxann G Ingersoll, Cheryl Markin, William E Lawson, Mingyi Xie, Irma Vulto, John A Phillips,[...]. N Engl J Med 2007
801
29

Thyroid hormone inhibits lung fibrosis in mice by improving epithelial mitochondrial function.
Guoying Yu, Argyris Tzouvelekis, Rong Wang, Jose D Herazo-Maya, Gabriel H Ibarra, Anup Srivastava, Joao Pedro Werneck de Castro, Giuseppe DeIuliis, Farida Ahangari, Tony Woolard,[...]. Nat Med 2018
132
29

Telomere dysfunction in alveolar epithelial cells causes lung remodeling and fibrosis.
Ram P Naikawadi, Supparerk Disayabutr, Benat Mallavia, Matthew L Donne, Gary Green, Janet L La, Jason R Rock, Mark R Looney, Paul J Wolters. JCI Insight 2016
116
25

IPF lung fibroblasts have a senescent phenotype.
Diana Álvarez, Nayra Cárdenes, Jacobo Sellarés, Marta Bueno, Catherine Corey, Vidya Sagar Hanumanthu, Yating Peng, Hannah D'Cunha, John Sembrat, Mehdi Nouraie,[...]. Am J Physiol Lung Cell Mol Physiol 2017
117
25

Idiopathic pulmonary fibrosis.
Fernando J Martinez, Harold R Collard, Annie Pardo, Ganesh Raghu, Luca Richeldi, Moises Selman, Jeffrey J Swigris, Hiroyuki Taniguchi, Athol U Wells. Nat Rev Dis Primers 2017
294
25

Macrophage Akt1 Kinase-Mediated Mitophagy Modulates Apoptosis Resistance and Pulmonary Fibrosis.
Jennifer L Larson-Casey, Jessy S Deshane, Alan J Ryan, Victor J Thannickal, A Brent Carter. Immunity 2016
160
25

Oxidized mitochondrial DNA activates the NLRP3 inflammasome during apoptosis.
Kenichi Shimada, Timothy R Crother, Justin Karlin, Jargalsaikhan Dagvadorj, Norika Chiba, Shuang Chen, V Krishnan Ramanujan, Andrea J Wolf, Laurent Vergnes, David M Ojcius,[...]. Immunity 2012
22

Single-cell RNA sequencing identifies diverse roles of epithelial cells in idiopathic pulmonary fibrosis.
Yan Xu, Takako Mizuno, Anusha Sridharan, Yina Du, Minzhe Guo, Jie Tang, Kathryn A Wikenheiser-Brokamp, Anne-Karina T Perl, Vincent A Funari, Jason J Gokey,[...]. JCI Insight 2016
249
22

Senolytic drugs target alveolar epithelial cell function and attenuate experimental lung fibrosis ex vivo.
Mareike Lehmann, Martina Korfei, Kathrin Mutze, Stephan Klee, Wioletta Skronska-Wasek, Hani N Alsafadi, Chiharu Ota, Rita Costa, Herbert B Schiller, Michael Lindner,[...]. Eur Respir J 2017
150
22

A phase 3 trial of pirfenidone in patients with idiopathic pulmonary fibrosis.
Talmadge E King, Williamson Z Bradford, Socorro Castro-Bernardini, Elizabeth A Fagan, Ian Glaspole, Marilyn K Glassberg, Eduard Gorina, Peter M Hopkins, David Kardatzke, Lisa Lancaster,[...]. N Engl J Med 2014
22

Mitochondrial catalase overexpressed transgenic mice are protected against lung fibrosis in part via preventing alveolar epithelial cell mitochondrial DNA damage.
Seok-Jo Kim, Paul Cheresh, Renea P Jablonski, Luisa Morales-Nebreda, Yuan Cheng, Erin Hogan, Anjana Yeldandi, Monica Chi, Raul Piseaux, Karen Ridge,[...]. Free Radic Biol Med 2016
40
22

Efficacy and safety of nintedanib in idiopathic pulmonary fibrosis.
Luca Richeldi, Roland M du Bois, Ganesh Raghu, Arata Azuma, Kevin K Brown, Ulrich Costabel, Vincent Cottin, Kevin R Flaherty, David M Hansell, Yoshikazu Inoue,[...]. N Engl J Med 2014
22

Involvement of PARK2-Mediated Mitophagy in Idiopathic Pulmonary Fibrosis Pathogenesis.
Kenji Kobayashi, Jun Araya, Shunsuke Minagawa, Hiromichi Hara, Nayuta Saito, Tsukasa Kadota, Nahoko Sato, Masahiro Yoshida, Kazuya Tsubouchi, Yusuke Kurita,[...]. J Immunol 2016
63
22

Mitochondrial dysfunction contributes to the senescent phenotype of IPF lung fibroblasts.
Michael Schuliga, Dmitri V Pechkovsky, Jane Read, David W Waters, Kaj E C Blokland, Andrew T Reid, Cory M Hogaboam, Nasreen Khalil, Janette K Burgess, Cecilia M Prêle,[...]. J Cell Mol Med 2018
36
22

Metformin reverses established lung fibrosis in a bleomycin model.
Sunad Rangarajan, Nathaniel B Bone, Anna A Zmijewska, Shaoning Jiang, Dae Won Park, Karen Bernard, Morgan L Locy, Saranya Ravi, Jessy Deshane, Roslyn B Mannon,[...]. Nat Med 2018
180
18

Deregulation of selective autophagy during aging and pulmonary fibrosis: the role of TGFβ1.
Meredith L Sosulski, Rafael Gongora, Svitlana Danchuk, Chunmin Dong, Fayong Luo, Cecilia G Sanchez. Aging Cell 2015
97
18

Mitochondria-targeted Ogg1 and aconitase-2 prevent oxidant-induced mitochondrial DNA damage in alveolar epithelial cells.
Seok-Jo Kim, Paul Cheresh, David Williams, Yuan Cheng, Karen Ridge, Paul T Schumacker, Sigmund Weitzman, Vilhelm A Bohr, David W Kamp. J Biol Chem 2014
60
18

Asbestos-induced pulmonary fibrosis is augmented in 8-oxoguanine DNA glycosylase knockout mice.
Paul Cheresh, Luisa Morales-Nebreda, Seok-Jo Kim, Anjana Yeldandi, David B Williams, Yuan Cheng, Gökhan M Mutlu, G R Scott Budinger, Karen Ridge, Paul T Schumacker,[...]. Am J Respir Cell Mol Biol 2015
31
18

Monocyte-derived alveolar macrophages drive lung fibrosis and persist in the lung over the life span.
Alexander V Misharin, Luisa Morales-Nebreda, Paul A Reyfman, Carla M Cuda, James M Walter, Alexandra C McQuattie-Pimentel, Ching-I Chen, Kishore R Anekalla, Nikita Joshi, Kinola J N Williams,[...]. J Exp Med 2017
353
18

STING-dependent sensing of self-DNA drives silica-induced lung inflammation.
Sulayman Benmerzoug, Stéphanie Rose, Badreddine Bounab, David Gosset, Laure Duneau, Pauline Chenuet, Lucile Mollet, Marc Le Bert, Christopher Lambers, Silvana Geleff,[...]. Nat Commun 2018
73
18

Circulating mitochondrial DAMPs cause inflammatory responses to injury.
Qin Zhang, Mustafa Raoof, Yu Chen, Yuka Sumi, Tolga Sursal, Wolfgang Junger, Karim Brohi, Kiyoshi Itagaki, Carl J Hauser. Nature 2010
18

Mitochondrial DNA that escapes from autophagy causes inflammation and heart failure.
Takafumi Oka, Shungo Hikoso, Osamu Yamaguchi, Manabu Taneike, Toshihiro Takeda, Takahito Tamai, Jota Oyabu, Tomokazu Murakawa, Hiroyuki Nakayama, Kazuhiko Nishida,[...]. Nature 2012
645
14

Short telomeres are a risk factor for idiopathic pulmonary fibrosis.
Jonathan K Alder, Julian J-L Chen, Lisa Lancaster, Sonye Danoff, Shu-chih Su, Joy D Cogan, Irma Vulto, Mingyi Xie, Xiaodong Qi, Rubin M Tuder,[...]. Proc Natl Acad Sci U S A 2008
464
14

Telomere dysfunction causes alveolar stem cell failure.
Jonathan K Alder, Christina E Barkauskas, Nathachit Limjunyawong, Susan E Stanley, Frant Kembou, Rubin M Tuder, Brigid L M Hogan, Wayne Mitzner, Mary Armanios. Proc Natl Acad Sci U S A 2015
167
14


Resequencing Study Confirms That Host Defense and Cell Senescence Gene Variants Contribute to the Risk of Idiopathic Pulmonary Fibrosis.
Camille Moore, Rachel Z Blumhagen, Ivana V Yang, Avram Walts, Julie Powers, Tarik Walker, Makenna Bishop, Pamela Russell, Brian Vestal, Jonathan Cardwell,[...]. Am J Respir Crit Care Med 2019
39
14

Exome sequencing links mutations in PARN and RTEL1 with familial pulmonary fibrosis and telomere shortening.
Bridget D Stuart, Jungmin Choi, Samir Zaidi, Chao Xing, Brody Holohan, Rui Chen, Mihwa Choi, Pooja Dharwadkar, Fernando Torres, Carlos E Girod,[...]. Nat Genet 2015
242
14

Genome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.
Tasha E Fingerlin, Elissa Murphy, Weiming Zhang, Anna L Peljto, Kevin K Brown, Mark P Steele, James E Loyd, Gregory P Cosgrove, David Lynch, Steve Groshong,[...]. Nat Genet 2013
414
14

Muc5b overexpression causes mucociliary dysfunction and enhances lung fibrosis in mice.
Laura A Hancock, Corinne E Hennessy, George M Solomon, Evgenia Dobrinskikh, Alani Estrella, Naoko Hara, David B Hill, William J Kissner, Matthew R Markovetz, Diane E Grove Villalon,[...]. Nat Commun 2018
67
14

Adult-onset pulmonary fibrosis caused by mutations in telomerase.
Kalliopi D Tsakiri, Jennifer T Cronkhite, Phillip J Kuan, Chao Xing, Ganesh Raghu, Jonathan C Weissler, Randall L Rosenblatt, Jerry W Shay, Christine Kim Garcia. Proc Natl Acad Sci U S A 2007
562
14

The hallmarks of aging.
Carlos López-Otín, Maria A Blasco, Linda Partridge, Manuel Serrano, Guido Kroemer. Cell 2013
14

Single-Cell Transcriptomic Analysis of Human Lung Provides Insights into the Pathobiology of Pulmonary Fibrosis.
Paul A Reyfman, James M Walter, Nikita Joshi, Kishore R Anekalla, Alexandra C McQuattie-Pimentel, Stephen Chiu, Ramiro Fernandez, Mahzad Akbarpour, Ching-I Chen, Ziyou Ren,[...]. Am J Respir Crit Care Med 2019
327
14

Reversal of persistent fibrosis in aging by targeting Nox4-Nrf2 redox imbalance.
Louise Hecker, Naomi J Logsdon, Deepali Kurundkar, Ashish Kurundkar, Karen Bernard, Thomas Hock, Eric Meldrum, Yan Y Sanders, Victor J Thannickal. Sci Transl Med 2014
372
14

Incidence and prevalence of idiopathic pulmonary fibrosis.
Ganesh Raghu, Derek Weycker, John Edelsberg, Williamson Z Bradford, Gerry Oster. Am J Respir Crit Care Med 2006
791
14

An official ATS/ERS/JRS/ALAT statement: idiopathic pulmonary fibrosis: evidence-based guidelines for diagnosis and management.
Ganesh Raghu, Harold R Collard, Jim J Egan, Fernando J Martinez, Juergen Behr, Kevin K Brown, Thomas V Colby, Jean-François Cordier, Kevin R Flaherty, Joseph A Lasky,[...]. Am J Respir Crit Care Med 2011
14

Senolytics in idiopathic pulmonary fibrosis: Results from a first-in-human, open-label, pilot study.
Jamie N Justice, Anoop M Nambiar, Tamar Tchkonia, Nathan K LeBrasseur, Rodolfo Pascual, Shahrukh K Hashmi, Larissa Prata, Michal M Masternak, Stephen B Kritchevsky, Nicolas Musi,[...]. EBioMedicine 2019
296
14

Epithelial endoplasmic reticulum stress and apoptosis in sporadic idiopathic pulmonary fibrosis.
Martina Korfei, Clemens Ruppert, Poornima Mahavadi, Ingrid Henneke, Philipp Markart, Miriam Koch, Gyoergy Lang, Ludger Fink, Rainer-Maria Bohle, Werner Seeger,[...]. Am J Respir Crit Care Med 2008
335
14

Mitophagy-dependent necroptosis contributes to the pathogenesis of COPD.
Kenji Mizumura, Suzanne M Cloonan, Kiichi Nakahira, Abhiram R Bhashyam, Morgan Cervo, Tohru Kitada, Kimberly Glass, Caroline A Owen, Ashfaq Mahmood, George R Washko,[...]. J Clin Invest 2014
292
14

Metabolic heterogeneity of idiopathic pulmonary fibrosis: a metabolomic study.
Yidan D Zhao, Li Yin, Stephen Archer, Catherine Lu, George Zhao, Yan Yao, Licun Wu, Michael Hsin, Thomas K Waddell, Shaf Keshavjee,[...]. BMJ Open Respir Res 2017
66
14

NOX4 modulates macrophage phenotype and mitochondrial biogenesis in asbestosis.
Chao He, Jennifer L Larson-Casey, Dana Davis, Vidya Sagar Hanumanthu, Ana Leda F Longhini, Victor J Thannickal, Linlin Gu, A Brent Carter. JCI Insight 2019
17
23

TLR9 differentiates rapidly from slowly progressing forms of idiopathic pulmonary fibrosis.
Glenda Trujillo, Alessia Meneghin, Kevin R Flaherty, Lynette M Sholl, Jeffrey L Myers, Ella A Kazerooni, Barry H Gross, Sameer R Oak, Ana Lucia Coelho, Holly Evanoff,[...]. Sci Transl Med 2010
101
14

Mitofusins regulate lipid metabolism to mediate the development of lung fibrosis.
Kuei-Pin Chung, Chia-Lang Hsu, Li-Chao Fan, Ziling Huang, Divya Bhatia, Yi-Jung Chen, Shu Hisata, Soo Jung Cho, Kiichi Nakahira, Mitsuru Imamura,[...]. Nat Commun 2019
29
14

Endoplasmic reticulum stress in the pathogenesis of fibrotic disease.
Jonathan A Kropski, Timothy S Blackwell. J Clin Invest 2018
68
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.