A citation-based method for searching scientific literature

Aaron J Plys, Christopher P Davis, Jongmin Kim, Gizem Rizki, Madeline M Keenen, Sharon K Marr, Robert E Kingston. Genes Dev 2019
Times Cited: 134







List of co-cited articles
1777 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Liquid droplet formation by HP1α suggests a role for phase separation in heterochromatin.
Adam G Larson, Daniel Elnatan, Madeline M Keenen, Michael J Trnka, Jonathan B Johnston, Alma L Burlingame, David A Agard, Sy Redding, Geeta J Narlikar. Nature 2017
734
65

Phase separation drives heterochromatin domain formation.
Amy R Strom, Alexander V Emelyanov, Mustafa Mir, Dmitry V Fyodorov, Xavier Darzacq, Gary H Karpen. Nature 2017
783
64

Nuclear condensates of the Polycomb protein chromobox 2 (CBX2) assemble through phase separation.
Roubina Tatavosian, Samantha Kent, Kyle Brown, Tingting Yao, Huy Nguyen Duc, Thao Ngoc Huynh, Chao Yu Zhen, Brian Ma, Haobin Wang, Xiaojun Ren. J Biol Chem 2019
136
62

Coactivator condensation at super-enhancers links phase separation and gene control.
Benjamin R Sabari, Alessandra Dall'Agnese, Ann Boija, Isaac A Klein, Eliot L Coffey, Krishna Shrinivas, Brian J Abraham, Nancy M Hannett, Alicia V Zamudio, John C Manteiga,[...]. Science 2018
809
42

Organization of Chromatin by Intrinsic and Regulated Phase Separation.
Bryan A Gibson, Lynda K Doolittle, Maximillian W G Schneider, Liv E Jensen, Nathan Gamarra, Lisa Henry, Daniel W Gerlich, Sy Redding, Michael K Rosen. Cell 2019
305
39

Biomolecular condensates: organizers of cellular biochemistry.
Salman F Banani, Hyun O Lee, Anthony A Hyman, Michael K Rosen. Nat Rev Mol Cell Biol 2017
32

Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.
Ann Boija, Isaac A Klein, Benjamin R Sabari, Alessandra Dall'Agnese, Eliot L Coffey, Alicia V Zamudio, Charles H Li, Krishna Shrinivas, John C Manteiga, Nancy M Hannett,[...]. Cell 2018
529
31

Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.
Won-Ki Cho, Jan-Hendrik Spille, Micca Hecht, Choongman Lee, Charles Li, Valentin Grube, Ibrahim I Cisse. Science 2018
488
30

A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping.
Suhas S P Rao, Miriam H Huntley, Neva C Durand, Elena K Stamenova, Ivan D Bochkov, James T Robinson, Adrian L Sanborn, Ido Machol, Arina D Omer, Eric S Lander,[...]. Cell 2014
28

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
28

SAM domain polymerization links subnuclear clustering of PRC1 to gene silencing.
Kyoichi Isono, Takaho A Endo, Manching Ku, Daisuke Yamada, Rie Suzuki, Jafar Sharif, Tomoyuki Ishikura, Tetsuro Toyoda, Bradley E Bernstein, Haruhiko Koseki. Dev Cell 2013
161
28

A Phase Separation Model for Transcriptional Control.
Denes Hnisz, Krishna Shrinivas, Richard A Young, Arup K Chakraborty, Phillip A Sharp. Cell 2017
711
28

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
26

Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation.
Sharmistha Kundu, Fei Ji, Hongjae Sunwoo, Gaurav Jain, Jeannie T Lee, Ruslan I Sadreyev, Job Dekker, Robert E Kingston. Mol Cell 2017
147
25

Histone Modifications Regulate Chromatin Compartmentalization by Contributing to a Phase Separation Mechanism.
Liang Wang, Yifei Gao, Xiangdong Zheng, Cuifang Liu, Shuangshuang Dong, Ru Li, Guanwei Zhang, Yixuan Wei, Hongyuan Qu, Yuhan Li,[...]. Mol Cell 2019
111
25

HP1 reshapes nucleosome core to promote phase separation of heterochromatin.
S Sanulli, M J Trnka, V Dharmarajan, R W Tibble, B D Pascal, A L Burlingame, P R Griffin, J D Gross, G J Narlikar. Nature 2019
165
25

Genome Regulation by Polycomb and Trithorax: 70 Years and Counting.
Bernd Schuettengruber, Henri-Marc Bourbon, Luciano Di Croce, Giacomo Cavalli. Cell 2017
412
24

Variant PRC1 complex-dependent H2A ubiquitylation drives PRC2 recruitment and polycomb domain formation.
Neil P Blackledge, Anca M Farcas, Takashi Kondo, Hamish W King, Joanna F McGouran, Lars L P Hanssen, Shinsuke Ito, Sarah Cooper, Kaori Kondo, Yoko Koseki,[...]. Cell 2014
432
21

PCGF homologs, CBX proteins, and RYBP define functionally distinct PRC1 family complexes.
Zhonghua Gao, Jin Zhang, Roberto Bonasio, Francesco Strino, Ayana Sawai, Fabio Parisi, Yuval Kluger, Danny Reinberg. Mol Cell 2012
526
21

Histone H2AK119 Mono-Ubiquitination Is Essential for Polycomb-Mediated Transcriptional Repression.
Simone Tamburri, Elisa Lavarone, Daniel Fernández-Pérez, Eric Conway, Marika Zanotti, Daria Manganaro, Diego Pasini. Mol Cell 2020
102
21

Mutation of a nucleosome compaction region disrupts Polycomb-mediated axial patterning.
Mei Sheng Lau, Matthew G Schwartz, Sharmistha Kundu, Andrej J Savol, Peggy I Wang, Sharon K Marr, Daniel J Grau, Patrick Schorderet, Ruslan I Sadreyev, Clifford J Tabin,[...]. Science 2017
74
28

Chromatin compaction by a polycomb group protein complex.
Nicole J Francis, Robert E Kingston, Christopher L Woodcock. Science 2004
547
21

Compaction of chromatin by diverse Polycomb group proteins requires localized regions of high charge.
Daniel J Grau, Brad A Chapman, Joe D Garlick, Mark Borowsky, Nicole J Francis, Robert E Kingston. Genes Dev 2011
135
21

Imaging dynamic and selective low-complexity domain interactions that control gene transcription.
Shasha Chong, Claire Dugast-Darzacq, Zhe Liu, Peng Dong, Gina M Dailey, Claudia Cattoglio, Alec Heckert, Sambashiva Banala, Luke Lavis, Xavier Darzacq,[...]. Science 2018
372
21

Histone H2A monoubiquitination promotes histone H3 methylation in Polycomb repression.
Reinhard Kalb, Sebastian Latwiel, H Irem Baymaz, Pascal W T C Jansen, Christoph W Müller, Michiel Vermeulen, Jürg Müller. Nat Struct Mol Biol 2014
253
20

Liquid Nuclear Condensates Mechanically Sense and Restructure the Genome.
Yongdae Shin, Yi-Che Chang, Daniel S W Lee, Joel Berry, David W Sanders, Pierre Ronceray, Ned S Wingreen, Mikko Haataja, Clifford P Brangwynne. Cell 2018
238
20

Pol II phosphorylation regulates a switch between transcriptional and splicing condensates.
Yang Eric Guo, John C Manteiga, Jonathan E Henninger, Benjamin R Sabari, Alessandra Dall'Agnese, Nancy M Hannett, Jan-Hendrik Spille, Lena K Afeyan, Alicia V Zamudio, Krishna Shrinivas,[...]. Nature 2019
209
20

Role of histone H3 lysine 27 methylation in Polycomb-group silencing.
Ru Cao, Liangjun Wang, Hengbin Wang, Li Xia, Hediye Erdjument-Bromage, Paul Tempst, Richard S Jones, Yi Zhang. Science 2002
19

PRC1 Catalytic Activity Is Central to Polycomb System Function.
Neil P Blackledge, Nadezda A Fursova, Jessica R Kelley, Miles K Huseyin, Angelika Feldmann, Robert J Klose. Mol Cell 2020
87
21

Liquid phase condensation in cell physiology and disease.
Yongdae Shin, Clifford P Brangwynne. Science 2017
19

Formation of Chromatin Subcompartments by Phase Separation.
Fabian Erdel, Karsten Rippe. Biophys J 2018
147
19

Evaluating phase separation in live cells: diagnosis, caveats, and functional consequences.
David T McSwiggen, Mustafa Mir, Xavier Darzacq, Robert Tjian. Genes Dev 2019
192
19


Synergy between Variant PRC1 Complexes Defines Polycomb-Mediated Gene Repression.
Nadezda A Fursova, Neil P Blackledge, Manabu Nakayama, Shinsuke Ito, Yoko Koseki, Anca M Farcas, Hamish W King, Haruhiko Koseki, Robert J Klose. Mol Cell 2019
94
19

Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation.
Fabian Erdel, Anne Rademacher, Rifka Vlijm, Jana Tünnermann, Lukas Frank, Robin Weinmann, Elisabeth Schweigert, Klaus Yserentant, Johan Hummert, Caroline Bauer,[...]. Mol Cell 2020
89
20

RNA polymerase II clustering through carboxy-terminal domain phase separation.
Marc Boehning, Claire Dugast-Darzacq, Marija Rankovic, Anders S Hansen, Taekyung Yu, Herve Marie-Nelly, David T McSwiggen, Goran Kokic, Gina M Dailey, Patrick Cramer,[...]. Nat Struct Mol Biol 2018
248
18

Liquid-liquid phase separation in biology.
Anthony A Hyman, Christoph A Weber, Frank Jülicher. Annu Rev Cell Dev Biol 2014
17

Protein Phase Separation: A New Phase in Cell Biology.
Steven Boeynaems, Simon Alberti, Nicolas L Fawzi, Tanja Mittag, Magdalini Polymenidou, Frederic Rousseau, Joost Schymkowitz, James Shorter, Benjamin Wolozin, Ludo Van Den Bosch,[...]. Trends Cell Biol 2018
718
17

Role of the polycomb protein EED in the propagation of repressive histone marks.
Raphael Margueron, Neil Justin, Katsuhito Ohno, Miriam L Sharpe, Jinsook Son, William J Drury, Philipp Voigt, Stephen R Martin, William R Taylor, Valeria De Marco,[...]. Nature 2009
753
16

Phase-separation mechanism for C-terminal hyperphosphorylation of RNA polymerase II.
Huasong Lu, Dan Yu, Anders S Hansen, Sourav Ganguly, Rongdiao Liu, Alec Heckert, Xavier Darzacq, Qiang Zhou. Nature 2018
238
16

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
15

Chromatin organization by an interplay of loop extrusion and compartmental segregation.
Johannes Nuebler, Geoffrey Fudenberg, Maxim Imakaev, Nezar Abdennur, Leonid A Mirny. Proc Natl Acad Sci U S A 2018
246
15

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
766
15

Cohesin Loss Eliminates All Loop Domains.
Suhas S P Rao, Su-Chen Huang, Brian Glenn St Hilaire, Jesse M Engreitz, Elizabeth M Perez, Kyong-Rim Kieffer-Kwon, Adrian L Sanborn, Sarah E Johnstone, Gavin D Bascom, Ivan D Bochkov,[...]. Cell 2017
721
15

Polycomb repressive complex PRC1 spatially constrains the mouse embryonic stem cell genome.
Stefan Schoenfelder, Robert Sugar, Andrew Dimond, Biola-Maria Javierre, Harry Armstrong, Borbala Mifsud, Emilia Dimitrova, Louise Matheson, Filipe Tavares-Cadete, Mayra Furlan-Magaril,[...]. Nat Genet 2015
205
15

Role of histone H2A ubiquitination in Polycomb silencing.
Hengbin Wang, Liangjun Wang, Hediye Erdjument-Bromage, Miguel Vidal, Paul Tempst, Richard S Jones, Yi Zhang. Nature 2004
15

Chromatin topology is coupled to Polycomb group protein subnuclear organization.
Ajazul H Wani, Alistair N Boettiger, Patrick Schorderet, Ayla Ergun, Christine Münger, Ruslan I Sadreyev, Xiaowei Zhuang, Robert E Kingston, Nicole J Francis. Nat Commun 2016
104
15

Coexisting Liquid Phases Underlie Nucleolar Subcompartments.
Marina Feric, Nilesh Vaidya, Tyler S Harmon, Diana M Mitrea, Lian Zhu, Tiffany M Richardson, Richard W Kriwacki, Rohit V Pappu, Clifford P Brangwynne. Cell 2016
745
15

Chromatin extrusion explains key features of loop and domain formation in wild-type and engineered genomes.
Adrian L Sanborn, Suhas S P Rao, Su-Chen Huang, Neva C Durand, Miriam H Huntley, Andrew I Jewett, Ivan D Bochkov, Dharmaraj Chinnappan, Ashok Cutkosky, Jian Li,[...]. Proc Natl Acad Sci U S A 2015
796
14

Multiscale 3D Genome Rewiring during Mouse Neural Development.
Boyan Bonev, Netta Mendelson Cohen, Quentin Szabo, Lauriane Fritsch, Giorgio L Papadopoulos, Yaniv Lubling, Xiaole Xu, Xiaodan Lv, Jean-Philippe Hugnot, Amos Tanay,[...]. Cell 2017
502
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.