A citation-based method for searching scientific literature

Olivier Ganier, Paulina Prorok, Ildem Akerman, Marcel Méchali. Curr Opin Cell Biol 2019
Times Cited: 22







List of co-cited articles
257 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Replication landscape of the human genome.
Nataliya Petryk, Malik Kahli, Yves d'Aubenton-Carafa, Yan Jaszczyszyn, Yimin Shen, Maud Silvain, Claude Thermes, Chun-Long Chen, Olivier Hyrien. Nat Commun 2016
148
36

Unraveling cell type-specific and reprogrammable human replication origin signatures associated with G-quadruplex consensus motifs.
Emilie Besnard, Amélie Babled, Laure Lapasset, Ollivier Milhavet, Hugues Parrinello, Christelle Dantec, Jean-Michel Marin, Jean-Marc Lemaitre. Nat Struct Mol Biol 2012
254
36

DNA replication origins-where do we begin?
Marie-Noëlle Prioleau, David M MacAlpine. Genes Dev 2016
96
31


Genome-wide analysis of the spatiotemporal regulation of firing and dormant replication origins in human cells.
Nozomi Sugimoto, Kazumitsu Maehara, Kazumasa Yoshida, Yasuyuki Ohkawa, Masatoshi Fujita. Nucleic Acids Res 2018
35
31

Genome-wide mapping of human DNA-replication origins: levels of transcription at ORC1 sites regulate origin selection and replication timing.
Gaetano Ivan Dellino, Davide Cittaro, Rossana Piccioni, Lucilla Luzi, Stefania Banfi, Simona Segalla, Matteo Cesaroni, Ramiro Mendoza-Maldonado, Mauro Giacca, Pier Giuseppe Pelicci. Genome Res 2013
101
31

Involvement of G-quadruplex regions in mammalian replication origin activity.
Paulina Prorok, Marie Artufel, Antoine Aze, Philippe Coulombe, Isabelle Peiffer, Laurent Lacroix, Aurore Guédin, Jean-Louis Mergny, Julia Damaschke, Aloys Schepers,[...]. Nat Commun 2019
62
31

Genome-scale analysis of metazoan replication origins reveals their organization in specific but flexible sites defined by conserved features.
Christelle Cayrou, Philippe Coulombe, Alice Vigneron, Slavica Stanojcic, Olivier Ganier, Isabelle Peiffer, Eric Rivals, Aurore Puy, Sabine Laurent-Chabalier, Romain Desprat,[...]. Genome Res 2011
220
27

DNA replication origin activation in space and time.
Michalis Fragkos, Olivier Ganier, Philippe Coulombe, Marcel Méchali. Nat Rev Mol Cell Biol 2015
262
27

The chromatin environment shapes DNA replication origin organization and defines origin classes.
Christelle Cayrou, Benoit Ballester, Isabelle Peiffer, Romain Fenouil, Philippe Coulombe, Jean-Christophe Andrau, Jacques van Helden, Marcel Méchali. Genome Res 2015
94
27

G4 motifs affect origin positioning and efficiency in two vertebrate replicators.
Anne-Laure Valton, Vahideh Hassan-Zadeh, Ingrid Lema, Nicole Boggetto, Patrizia Alberti, Carole Saintomé, Jean-Francois Riou, Marie-Noëlle Prioleau. EMBO J 2014
119
27

Mechanisms and regulation of DNA replication initiation in eukaryotes.
Matthew W Parker, Michael R Botchan, James M Berger. Crit Rev Biochem Mol Biol 2017
91
22

Transcription initiation activity sets replication origin efficiency in mammalian cells.
Joana Sequeira-Mendes, Ramón Díaz-Uriarte, Anwyn Apedaile, Derek Huntley, Neil Brockdorff, María Gómez. PLoS Genet 2009
169
22

Genome-wide studies highlight indirect links between human replication origins and gene regulation.
Jean-Charles Cadoret, Françoise Meisch, Vahideh Hassan-Zadeh, Isabelle Luyten, Claire Guillet, Laurent Duret, Hadi Quesneville, Marie-Noëlle Prioleau. Proc Natl Acad Sci U S A 2008
208
22


New insights into replication origin characteristics in metazoans.
Christelle Cayrou, Philippe Coulombe, Aurore Puy, Stephanie Rialle, Noam Kaplan, Eran Segal, Marcel Méchali. Cell Cycle 2012
119
22

Genome-wide identification and characterisation of human DNA replication origins by initiation site sequencing (ini-seq).
Alexander R Langley, Stefan Gräf, James C Smith, Torsten Krude. Nucleic Acids Res 2016
45
22

Origins of DNA replication.
Babatunde Ekundayo, Franziska Bleichert. PLoS Genet 2019
32
22

Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication.
Arkaitz Ibarra, Etienne Schwob, Juan Méndez. Proc Natl Acad Sci U S A 2008
318
18

Replication timing is regulated by the number of MCMs loaded at origins.
Shankar P Das, Tyler Borrman, Victor W T Liu, Scott C-H Yang, John Bechhoefer, Nicholas Rhind. Genome Res 2015
52
18

Dormant origins, the licensing checkpoint, and the response to replicative stresses.
Debbie McIntosh, J Julian Blow. Cold Spring Harb Perspect Biol 2012
83
18

Eukaryotic DNA Replication Fork.
Peter M J Burgers, Thomas A Kunkel. Annu Rev Biochem 2017
245
18

Mechanism of replication-coupled DNA interstrand crosslink repair.
Markus Räschle, Puck Knipscheer, Milica Enoiu, Todor Angelov, Jingchuan Sun, Jack D Griffith, Tom E Ellenberger, Orlando D Schärer, Johannes C Walter. Cell 2008
369
18

Concerted loading of Mcm2-7 double hexamers around DNA during DNA replication origin licensing.
Dirk Remus, Fabienne Beuron, Gökhan Tolun, Jack D Griffith, Edward P Morris, John F X Diffley. Cell 2009
436
18

Interaction of Chk1 with Treslin negatively regulates the initiation of chromosomal DNA replication.
Cai Guo, Akiko Kumagai, Katharina Schlacher, Anna Shevchenko, Andrej Shevchenko, William G Dunphy. Mol Cell 2015
65
18


Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
18

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
18

The spatiotemporal program of DNA replication is associated with specific combinations of chromatin marks in human cells.
Franck Picard, Jean-Charles Cadoret, Benjamin Audit, Alain Arneodo, Adriana Alberti, Christophe Battail, Laurent Duret, Marie-Noelle Prioleau. PLoS Genet 2014
85
18

Distinct epigenetic features of differentiation-regulated replication origins.
Owen K Smith, RyanGuk Kim, Haiqing Fu, Melvenia M Martin, Chii Mei Lin, Koichi Utani, Ya Zhang, Anna B Marks, Marc Lalande, Stormy Chamberlain,[...]. Epigenetics Chromatin 2016
34
18

Genome-wide depletion of replication initiation events in highly transcribed regions.
Melvenia M Martin, Michael Ryan, RyangGuk Kim, Anna L Zakas, Haiqing Fu, Chii Mei Lin, William C Reinhold, Sean R Davis, Sven Bilke, Hongfang Liu,[...]. Genome Res 2011
91
18

A new class of disordered elements controls DNA replication through initiator self-assembly.
Matthew W Parker, Maren Bell, Mustafa Mir, Jonchee A Kao, Xavier Darzacq, Michael R Botchan, James M Berger. Elife 2019
45
18

deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
18

An ATR and CHK1 kinase signaling mechanism that limits origin firing during unperturbed DNA replication.
Tatiana N Moiseeva, Yandong Yin, Michael J Calderon, Chenao Qian, Sandra Schamus-Haynes, Norie Sugitani, Hatice U Osmanbeyoglu, Eli Rothenberg, Simon C Watkins, Christopher J Bakkenist. Proc Natl Acad Sci U S A 2019
55
18

A predictable conserved DNA base composition signature defines human core DNA replication origins.
Ildem Akerman, Bahar Kasaai, Alina Bazarova, Pau Biak Sang, Isabelle Peiffer, Marie Artufel, Romain Derelle, Gabrielle Smith, Marta Rodriguez-Martinez, Manuela Romano,[...]. Nat Commun 2020
10
40

Excess Mcm2-7 license dormant origins of replication that can be used under conditions of replicative stress.
Anna M Woodward, Thomas Göhler, M Gloria Luciani, Maren Oehlmann, Xinquan Ge, Anton Gartner, Dean A Jackson, J Julian Blow. J Cell Biol 2006
261
13



Identifying cis Elements for Spatiotemporal Control of Mammalian DNA Replication.
Jiao Sima, Abhijit Chakraborty, Vishnu Dileep, Marco Michalski, Kyle N Klein, Nicolas P Holcomb, Jesse L Turner, Michelle T Paulsen, Juan Carlos Rivera-Mulia, Claudia Trevilla-Garcia,[...]. Cell 2019
79
13

How dormant origins promote complete genome replication.
J Julian Blow, Xin Quan Ge, Dean A Jackson. Trends Biochem Sci 2011
150
13

Cell type-specific responses of human cells to inhibition of replication licensing.
S Shreeram, Alison Sparks, David P Lane, J Julian Blow. Oncogene 2002
149
13

Mechanisms for initiating cellular DNA replication.
Franziska Bleichert, Michael R Botchan, James M Berger. Science 2017
108
13


Regulated eukaryotic DNA replication origin firing with purified proteins.
Joseph T P Yeeles, Tom D Deegan, Agnieszka Janska, Anne Early, John F X Diffley. Nature 2015
300
13

A double-hexameric MCM2-7 complex is loaded onto origin DNA during licensing of eukaryotic DNA replication.
Cecile Evrin, Pippa Clarke, Juergen Zech, Rudi Lurz, Jingchuan Sun, Stefan Uhle, Huilin Li, Bruce Stillman, Christian Speck. Proc Natl Acad Sci U S A 2009
366
13


An ATR- and Cdc7-dependent DNA damage checkpoint that inhibits initiation of DNA replication.
Vincenzo Costanzo, David Shechter, Patrick J Lupardus, Karlene A Cimprich, Max Gottesman, Jean Gautier. Mol Cell 2003
281
13

Chk1 regulates the density of active replication origins during the vertebrate S phase.
Apolinar Maya-Mendoza, Eva Petermann, David A F Gillespie, Keith W Caldecott, Dean A Jackson. EMBO J 2007
188
13

ATR and ATM regulate the timing of DNA replication origin firing.
David Shechter, Vincenzo Costanzo, Jean Gautier. Nat Cell Biol 2004
294
13



Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.