A citation-based method for searching scientific literature

Nathan W Gouwens, Staci A Sorensen, Jim Berg, Changkyu Lee, Tim Jarsky, Jonathan Ting, Susan M Sunkin, David Feng, Costas A Anastassiou, Eliza Barkan, Kris Bickley, Nicole Blesie, Thomas Braun, Krissy Brouner, Agata Budzillo, Shiella Caldejon, Tamara Casper, Dan Castelli, Peter Chong, Kirsten Crichton, Christine Cuhaciyan, Tanya L Daigle, Rachel Dalley, Nick Dee, Tsega Desta, Song-Lin Ding, Samuel Dingman, Alyse Doperalski, Nadezhda Dotson, Tom Egdorf, Michael Fisher, Rebecca A de Frates, Emma Garren, Marissa Garwood, Amanda Gary, Nathalie Gaudreault, Keith Godfrey, Melissa Gorham, Hong Gu, Caroline Habel, Kristen Hadley, James Harrington, Julie A Harris, Alex Henry, DiJon Hill, Sam Josephsen, Sara Kebede, Lisa Kim, Matthew Kroll, Brian Lee, Tracy Lemon, Katherine E Link, Xiaoxiao Liu, Brian Long, Rusty Mann, Medea McGraw, Stefan Mihalas, Alice Mukora, Gabe J Murphy, Lindsay Ng, Kiet Ngo, Thuc Nghi Nguyen, Philip R Nicovich, Aaron Oldre, Daniel Park, Sheana Parry, Jed Perkins, Lydia Potekhina, David Reid, Miranda Robertson, David Sandman, Martin Schroedter, Cliff Slaughterbeck, Gilberto Soler-Llavina, Josef Sulc, Aaron Szafer, Bosiljka Tasic, Naz Taskin, Corinne Teeter, Nivretta Thatra, Herman Tung, Wayne Wakeman, Grace Williams, Rob Young, Zhi Zhou, Colin Farrell, Hanchuan Peng, Michael J Hawrylycz, Ed Lein, Lydia Ng, Anton Arkhipov, Amy Bernard, John W Phillips, Hongkui Zeng, Christof Koch. Nat Neurosci 2019
Times Cited: 86







List of co-cited articles
768 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Shared and distinct transcriptomic cell types across neocortical areas.
Bosiljka Tasic, Zizhen Yao, Lucas T Graybuck, Kimberly A Smith, Thuc Nghi Nguyen, Darren Bertagnolli, Jeff Goldy, Emma Garren, Michael N Economo, Sarada Viswanathan,[...]. Nature 2018
372
38

Adult mouse cortical cell taxonomy revealed by single cell transcriptomics.
Bosiljka Tasic, Vilas Menon, Thuc Nghi Nguyen, Tae Kyung Kim, Tim Jarsky, Zizhen Yao, Boaz Levi, Lucas T Gray, Staci A Sorensen, Tim Dolbeare,[...]. Nat Neurosci 2016
695
27

Principles of connectivity among morphologically defined cell types in adult neocortex.
Xiaolong Jiang, Shan Shen, Cathryn R Cadwell, Philipp Berens, Fabian Sinz, Alexander S Ecker, Saumil Patel, Andreas S Tolias. Science 2015
346
26

GABAergic Interneurons in the Neocortex: From Cellular Properties to Circuits.
Robin Tremblay, Soohyun Lee, Bernardo Rudy. Neuron 2016
575
25


Petilla terminology: nomenclature of features of GABAergic interneurons of the cerebral cortex.
Giorgio A Ascoli, Lidia Alonso-Nanclares, Stewart A Anderson, German Barrionuevo, Ruth Benavides-Piccione, Andreas Burkhalter, György Buzsáki, Bruno Cauli, Javier Defelipe, Alfonso Fairén,[...]. Nat Rev Neurosci 2008
912
22

Reconstruction and Simulation of Neocortical Microcircuitry.
Henry Markram, Eilif Muller, Srikanth Ramaswamy, Michael W Reimann, Marwan Abdellah, Carlos Aguado Sanchez, Anastasia Ailamaki, Lidia Alonso-Nanclares, Nicolas Antille, Selim Arsever,[...]. Cell 2015
473
19

Conserved cell types with divergent features in human versus mouse cortex.
Rebecca D Hodge, Trygve E Bakken, Jeremy A Miller, Kimberly A Smith, Eliza R Barkan, Lucas T Graybuck, Jennie L Close, Brian Long, Nelson Johansen, Osnat Penn,[...]. Nature 2019
305
19

New insights into the classification and nomenclature of cortical GABAergic interneurons.
Javier DeFelipe, Pedro L López-Cruz, Ruth Benavides-Piccione, Concha Bielza, Pedro Larrañaga, Stewart Anderson, Andreas Burkhalter, Bruno Cauli, Alfonso Fairén, Dirk Feldmeyer,[...]. Nat Rev Neurosci 2013
439
18

Electrophysiological, transcriptomic and morphologic profiling of single neurons using Patch-seq.
Cathryn R Cadwell, Athanasia Palasantza, Xiaolong Jiang, Philipp Berens, Qiaolin Deng, Marlene Yilmaz, Jacob Reimer, Shan Shen, Matthias Bethge, Kimberley F Tolias,[...]. Nat Biotechnol 2016
220
17

Brain structure. Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq.
Amit Zeisel, Ana B Muñoz-Manchado, Simone Codeluppi, Peter Lönnerberg, Gioele La Manno, Anna Juréus, Sueli Marques, Hermany Munguba, Liqun He, Christer Betsholtz,[...]. Science 2015
17

Interneurons of the neocortical inhibitory system.
Henry Markram, Maria Toledo-Rodriguez, Yun Wang, Anirudh Gupta, Gilad Silberberg, Caizhi Wu. Nat Rev Neurosci 2004
15

The neocortical circuit: themes and variations.
Kenneth D Harris, Gordon M G Shepherd. Nat Neurosci 2015
389
15

Integration of electrophysiological recordings with single-cell RNA-seq data identifies neuronal subtypes.
János Fuzik, Amit Zeisel, Zoltán Máté, Daniela Calvigioni, Yuchio Yanagawa, Gábor Szabó, Sten Linnarsson, Tibor Harkany. Nat Biotechnol 2016
184
15

The largest group of superficial neocortical GABAergic interneurons expresses ionotropic serotonin receptors.
SooHyun Lee, Jens Hjerling-Leffler, Edward Zagha, Gord Fishell, Bernardo Rudy. J Neurosci 2010
355
12

Inhibition of inhibition in visual cortex: the logic of connections between molecularly distinct interneurons.
Carsten K Pfeffer, Mingshan Xue, Miao He, Z Josh Huang, Massimo Scanziani. Nat Neurosci 2013
637
12

Molecular Architecture of the Mouse Nervous System.
Amit Zeisel, Hannah Hochgerner, Peter Lönnerberg, Anna Johnsson, Fatima Memic, Job van der Zwan, Martin Häring, Emelie Braun, Lars E Borm, Gioele La Manno,[...]. Cell 2018
672
12

Molecular Diversity and Specializations among the Cells of the Adult Mouse Brain.
Arpiar Saunders, Evan Z Macosko, Alec Wysoker, Melissa Goldman, Fenna M Krienen, Heather de Rivera, Elizabeth Bien, Matthew Baum, Laura Bortolin, Shuyu Wang,[...]. Cell 2018
394
11

Cortical interneurons that specialize in disinhibitory control.
Hyun-Jae Pi, Balázs Hangya, Duda Kvitsiani, Joshua I Sanders, Z Josh Huang, Adam Kepecs. Nature 2013
540
9

A cortical circuit for gain control by behavioral state.
Yu Fu, Jason M Tucciarone, J Sebastian Espinosa, Nengyin Sheng, Daniel P Darcy, Roger A Nicoll, Z Josh Huang, Michael P Stryker. Cell 2014
449
9

Characterizing VIP Neurons in the Barrel Cortex of VIPcre/tdTomato Mice Reveals Layer-Specific Differences.
Alvar Prönneke, Bianca Scheuer, Robin J Wagener, Martin Möck, Mirko Witte, Jochen F Staiger. Cereb Cortex 2015
88
9

Anatomical characterization of Cre driver mice for neural circuit mapping and manipulation.
Julie A Harris, Karla E Hirokawa, Staci A Sorensen, Hong Gu, Maya Mills, Lydia L Ng, Phillip Bohn, Marty Mortrud, Benjamin Ouellette, Jolene Kidney,[...]. Front Neural Circuits 2014
195
9

A robust and high-throughput Cre reporting and characterization system for the whole mouse brain.
Linda Madisen, Theresa A Zwingman, Susan M Sunkin, Seung Wook Oh, Hatim A Zariwala, Hong Gu, Lydia L Ng, Richard D Palmiter, Michael J Hawrylycz, Allan R Jones,[...]. Nat Neurosci 2010
9

Functional specificity of local synaptic connections in neocortical networks.
Ho Ko, Sonja B Hofer, Bruno Pichler, Katherine A Buchanan, P Jesper Sjöström, Thomas D Mrsic-Flogel. Nature 2011
443
9

Diversity of Interneurons in the Dorsal Striatum Revealed by Single-Cell RNA Sequencing and PatchSeq.
Ana B Muñoz-Manchado, Carolina Bengtsson Gonzales, Amit Zeisel, Hermany Munguba, Bo Bekkouche, Nathan G Skene, Peter Lönnerberg, Jesper Ryge, Kenneth D Harris, Sten Linnarsson,[...]. Cell Rep 2018
65
12

Classes and continua of hippocampal CA1 inhibitory neurons revealed by single-cell transcriptomics.
Kenneth D Harris, Hannah Hochgerner, Nathan G Skene, Lorenza Magno, Linda Katona, Carolina Bengtsson Gonzales, Peter Somogyi, Nicoletta Kessaris, Sten Linnarsson, Jens Hjerling-Leffler. PLoS Biol 2018
95
9

Three groups of interneurons account for nearly 100% of neocortical GABAergic neurons.
Bernardo Rudy, Gordon Fishell, SooHyun Lee, Jens Hjerling-Leffler. Dev Neurobiol 2011
684
9

Integrated Morphoelectric and Transcriptomic Classification of Cortical GABAergic Cells.
Nathan W Gouwens, Staci A Sorensen, Fahimeh Baftizadeh, Agata Budzillo, Brian R Lee, Tim Jarsky, Lauren Alfiler, Katherine Baker, Eliza Barkan, Kyla Berry,[...]. Cell 2020
33
24


Transcriptional Architecture of Synaptic Communication Delineates GABAergic Neuron Identity.
Anirban Paul, Megan Crow, Ricardo Raudales, Miao He, Jesse Gillis, Z Josh Huang. Cell 2017
168
8

A resource of Cre driver lines for genetic targeting of GABAergic neurons in cerebral cortex.
Hiroki Taniguchi, Miao He, Priscilla Wu, Sangyong Kim, Raehum Paik, Ken Sugino, Duda Kvitsiani, Yu Fu, Jiangteng Lu, Ying Lin,[...]. Neuron 2011
963
8


A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
8

Systematic generation of biophysically detailed models for diverse cortical neuron types.
Nathan W Gouwens, Jim Berg, David Feng, Staci A Sorensen, Hongkui Zeng, Michael J Hawrylycz, Christof Koch, Anton Arkhipov. Nat Commun 2018
34
20

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain.
Johan Winnubst, Erhan Bas, Tiago A Ferreira, Zhuhao Wu, Michael N Economo, Patrick Edson, Ben J Arthur, Christopher Bruns, Konrad Rokicki, David Schauder,[...]. Cell 2019
87
8

Layer 4 of mouse neocortex differs in cell types and circuit organization between sensory areas.
Federico Scala, Dmitry Kobak, Shen Shan, Yves Bernaerts, Sophie Laturnus, Cathryn Rene Cadwell, Leonard Hartmanis, Emmanouil Froudarakis, Jesus Ramon Castro, Zheng Huan Tan,[...]. Nat Commun 2019
14
50

Interneuron cell types are fit to function.
Adam Kepecs, Gordon Fishell. Nature 2014
536
8

Selective attention. Long-range and local circuits for top-down modulation of visual cortex processing.
Siyu Zhang, Min Xu, Tsukasa Kamigaki, Johnny Phong Hoang Do, Wei-Cheng Chang, Sean Jenvay, Kazunari Miyamichi, Liqun Luo, Yang Dan. Science 2014
346
6

Layer-specific modulation of neocortical dendritic inhibition during active wakefulness.
William Muñoz, Robin Tremblay, Daniel Levenstein, Bernardo Rudy. Science 2017
130
6

A disinhibitory circuit mediates motor integration in the somatosensory cortex.
Soohyun Lee, Illya Kruglikov, Z Josh Huang, Gord Fishell, Bernardo Rudy. Nat Neurosci 2013
379
6

Sparse recurrent excitatory connectivity in the microcircuit of the adult mouse and human cortex.
Stephanie C Seeman, Luke Campagnola, Pasha A Davoudian, Alex Hoggarth, Travis A Hage, Alice Bosma-Moody, Christopher A Baker, Jung Hoon Lee, Stefan Mihalas, Corinne Teeter,[...]. Elife 2018
33
18

A neural circuit for spatial summation in visual cortex.
Hillel Adesnik, William Bruns, Hiroki Taniguchi, Z Josh Huang, Massimo Scanziani. Nature 2012
345
6

Thalamocortical Innervation Pattern in Mouse Auditory and Visual Cortex: Laminar and Cell-Type Specificity.
Xu-Ying Ji, Brian Zingg, Lukas Mesik, Zhongju Xiao, Li I Zhang, Huizhong W Tao. Cereb Cortex 2016
73
8


Transcriptomic and morphophysiological evidence for a specialized human cortical GABAergic cell type.
Eszter Boldog, Trygve E Bakken, Rebecca D Hodge, Mark Novotny, Brian D Aevermann, Judith Baka, Sándor Bordé, Jennie L Close, Francisco Diez-Fuertes, Song-Lin Ding,[...]. Nat Neurosci 2018
77
7

NeuroMorpho.Org: a central resource for neuronal morphologies.
Giorgio A Ascoli, Duncan E Donohue, Maryam Halavi. J Neurosci 2007
293
6


STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
6

Objective Morphological Classification of Neocortical Pyramidal Cells.
Lida Kanari, Srikanth Ramaswamy, Ying Shi, Sebastien Morand, Julie Meystre, Rodrigo Perin, Marwan Abdellah, Yun Wang, Kathryn Hess, Henry Markram. Cereb Cortex 2019
13
46

A platform for brain-wide imaging and reconstruction of individual neurons.
Michael N Economo, Nathan G Clack, Luke D Lavis, Charles R Gerfen, Karel Svoboda, Eugene W Myers, Jayaram Chandrashekar. Elife 2016
170
6


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.