A citation-based method for searching scientific literature

Deeksha Munnur, Edward Bartlett, Petra Mikolčević, Ilsa T Kirby, Johannes Gregor Matthias Rack, Andreja Mikoč, Michael S Cohen, Ivan Ahel. Nucleic Acids Res 2019
Times Cited: 65







List of co-cited articles
1061 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Reversible mono-ADP-ribosylation of DNA breaks.
Deeksha Munnur, Ivan Ahel. FEBS J 2017
89
58

Family-wide analysis of poly(ADP-ribose) polymerase activity.
Sejal Vyas, Ivan Matic, Lilen Uchima, Jenny Rood, Roko Zaja, Ronald T Hay, Ivan Ahel, Paul Chang. Nat Commun 2014
272
44

Poly(ADP-ribose) polymerases covalently modify strand break termini in DNA fragments in vitro.
Ibtissam Talhaoui, Natalia A Lebedeva, Gabriella Zarkovic, Christine Saint-Pierre, Mikhail M Kutuzov, Maria V Sukhanova, Bakhyt T Matkarimov, Didier Gasparutto, Murat K Saparbaev, Olga I Lavrik,[...]. Nucleic Acids Res 2016
76
41

Serine ADP-ribosylation reversal by the hydrolase ARH3.
Pietro Fontana, Juan José Bonfiglio, Luca Palazzo, Edward Bartlett, Ivan Matic, Ivan Ahel. Elife 2017
117
41

A family of macrodomain proteins reverses cellular mono-ADP-ribosylation.
Gytis Jankevicius, Markus Hassler, Barbara Golia, Vladimir Rybin, Martin Zacharias, Gyula Timinszky, Andreas G Ladurner. Nat Struct Mol Biol 2013
215
36


Characterization of DNA ADP-ribosyltransferase activities of PARP2 and PARP3: new insights into DNA ADP-ribosylation.
Gabriella Zarkovic, Ekaterina A Belousova, Ibtissam Talhaoui, Christine Saint-Pierre, Mikhail M Kutuzov, Bakhyt T Matkarimov, Denis Biard, Didier Gasparutto, Olga I Lavrik, Alexander A Ishchenko. Nucleic Acids Res 2018
67
36

Macrodomains: Structure, Function, Evolution, and Catalytic Activities.
Johannes Gregor Matthias Rack, Dragutin Perina, Ivan Ahel. Annu Rev Biochem 2016
123
33

Toward a unified nomenclature for mammalian ADP-ribosyltransferases.
Michael O Hottiger, Paul O Hassa, Bernhard Lüscher, Herwig Schüler, Friedrich Koch-Nolte. Trends Biochem Sci 2010
583
33

Deficiency of terminal ADP-ribose protein glycohydrolase TARG1/C6orf130 in neurodegenerative disease.
Reza Sharifi, Rosa Morra, C Denise Appel, Michael Tallis, Barry Chioza, Gytis Jankevicius, Michael A Simpson, Ivan Matic, Ege Ozkan, Barbara Golia,[...]. EMBO J 2013
202
33

The structure and catalytic mechanism of a poly(ADP-ribose) glycohydrolase.
Dea Slade, Mark S Dunstan, Eva Barkauskaite, Ria Weston, Pierre Lafite, Neil Dixon, Marijan Ahel, David Leys, Ivan Ahel. Nature 2011
237
32

Macrodomain-containing proteins are new mono-ADP-ribosylhydrolases.
Florian Rosenthal, Karla L H Feijs, Emilie Frugier, Mario Bonalli, Alexandra H Forst, Ralph Imhof, Hans C Winkler, David Fischer, Amedeo Caflisch, Paul O Hassa,[...]. Nat Struct Mol Biol 2013
216
32

The Toxin-Antitoxin System DarTG Catalyzes Reversible ADP-Ribosylation of DNA.
Gytis Jankevicius, Antonio Ariza, Marijan Ahel, Ivan Ahel. Mol Cell 2016
81
32

Serine ADP-Ribosylation Depends on HPF1.
Juan José Bonfiglio, Pietro Fontana, Qi Zhang, Thomas Colby, Ian Gibbs-Seymour, Ilian Atanassov, Edward Bartlett, Roko Zaja, Ivan Ahel, Ivan Matic. Mol Cell 2017
156
29

(ADP-ribosyl)hydrolases: structure, function, and biology.
Johannes Gregor Matthias Rack, Luca Palazzo, Ivan Ahel. Genes Dev 2020
54
35

Dna is a New Target of Parp3.
E A Belousova, А A Ishchenko, O I Lavrik. Sci Rep 2018
39
46

ADP-Ribosylation, a Multifaceted Posttranslational Modification Involved in the Control of Cell Physiology in Health and Disease.
Bernhard Lüscher, Mareike Bütepage, Laura Eckei, Sarah Krieg, Patricia Verheugd, Brian H Shilton. Chem Rev 2018
101
27

Serine is the major residue for ADP-ribosylation upon DNA damage.
Luca Palazzo, Orsolya Leidecker, Evgeniia Prokhorova, Helen Dauben, Ivan Matic, Ivan Ahel. Elife 2018
107
27

Viral Macro Domains Reverse Protein ADP-Ribosylation.
Changqing Li, Yannick Debing, Gytis Jankevicius, Johan Neyts, Ivan Ahel, Bruno Coutard, Bruno Canard. J Virol 2016
87
26


ADP-ribosylation: new facets of an ancient modification.
Luca Palazzo, Andreja Mikoč, Ivan Ahel. FEBS J 2017
90
26

Specificity of reversible ADP-ribosylation and regulation of cellular processes.
Kerryanne Crawford, Juan José Bonfiglio, Andreja Mikoč, Ivan Matic, Ivan Ahel. Crit Rev Biochem Mol Biol 2018
59
28

HPF1 completes the PARP active site for DNA damage-induced ADP-ribosylation.
Marcin J Suskiewicz, Florian Zobel, Tom E H Ogden, Pietro Fontana, Antonio Ariza, Ji-Chun Yang, Kang Zhu, Lily Bracken, William J Hawthorne, Dragana Ahel,[...]. Nature 2020
82
26

Distribution of protein poly(ADP-ribosyl)ation systems across all domains of life.
Dragutin Perina, Andreja Mikoč, Josip Ahel, Helena Ćetković, Roko Žaja, Ivan Ahel. DNA Repair (Amst) 2014
96
24

The coronavirus macrodomain is required to prevent PARP-mediated inhibition of virus replication and enhancement of IFN expression.
Matthew E Grunewald, Yating Chen, Chad Kuny, Takashi Maejima, Robert Lease, Dana Ferraris, Masanori Aikawa, Christopher S Sullivan, Stanley Perlman, Anthony R Fehr. PLoS Pathog 2019
82
24

Identification of macrodomain proteins as novel O-acetyl-ADP-ribose deacetylases.
Dawei Chen, Melanie Vollmar, Marianna N Rossi, Claire Phillips, Rolf Kraehenbuehl, Dea Slade, Pawan V Mehrotra, Frank von Delft, Susan K Crosthwaite, Opher Gileadi,[...]. J Biol Chem 2011
117
24

Serine is a new target residue for endogenous ADP-ribosylation on histones.
Orsolya Leidecker, Juan José Bonfiglio, Thomas Colby, Qi Zhang, Ilian Atanassov, Roko Zaja, Luca Palazzo, Anna Stockum, Ivan Ahel, Ivan Matic. Nat Chem Biol 2016
125
23

HPF1/C4orf27 Is a PARP-1-Interacting Protein that Regulates PARP-1 ADP-Ribosylation Activity.
Ian Gibbs-Seymour, Pietro Fontana, Johannes Gregor Matthias Rack, Ivan Ahel. Mol Cell 2016
132
23

Visualization of poly(ADP-ribose) bound to PARG reveals inherent balance between exo- and endo-glycohydrolase activities.
Eva Barkauskaite, Amy Brassington, Edwin S Tan, Jim Warwicker, Mark S Dunstan, Benito Banos, Pierre Lafite, Marijan Ahel, Timothy J Mitchison, Ivan Ahel,[...]. Nat Commun 2013
93
23

Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation.
Sara C Larsen, Ivo A Hendriks, David Lyon, Lars J Jensen, Michael L Nielsen. Cell Rep 2018
65
21

Viral Macrodomains: Unique Mediators of Viral Replication and Pathogenesis.
Anthony R Fehr, Gytis Jankevicius, Ivan Ahel, Stanley Perlman. Trends Microbiol 2018
66
21

Processing of protein ADP-ribosylation by Nudix hydrolases.
Luca Palazzo, Benjamin Thomas, Ann-Sofie Jemth, Thomas Colby, Orsolya Leidecker, Karla L H Feijs, Roko Zaja, Olga Loseva, Jordi Carreras Puigvert, Ivan Matic,[...]. Biochem J 2015
82
21

Substrate-assisted catalysis by PARP10 limits its activity to mono-ADP-ribosylation.
Henning Kleine, Elzbieta Poreba, Krzysztof Lesniewicz, Paul O Hassa, Michael O Hottiger, David W Litchfield, Brian H Shilton, Bernhard Lüscher. Mol Cell 2008
229
21


(ADP-ribosyl)hydrolases: Structural Basis for Differential Substrate Recognition and Inhibition.
Johannes Gregor Matthias Rack, Antonio Ariza, Bryon S Drown, Callum Henfrey, Edward Bartlett, Tomohiro Shirai, Paul J Hergenrother, Ivan Ahel. Cell Chem Biol 2018
31
41


Ubiquitin Modification by the E3 Ligase/ADP-Ribosyltransferase Dtx3L/Parp9.
Chun-Song Yang, Kasey Jividen, Adam Spencer, Natalia Dworak, Li Ni, Luke T Oostdyk, Mandovi Chatterjee, Beata Kuśmider, Brian Reon, Mahmut Parlak,[...]. Mol Cell 2017
78
20



The conserved macrodomains of the non-structural proteins of Chikungunya virus and other pathogenic positive strand RNA viruses function as mono-ADP-ribosylhydrolases.
Laura Eckei, Sarah Krieg, Mareike Bütepage, Anne Lehmann, Annika Gross, Barbara Lippok, Alexander R Grimm, Beate M Kümmerer, Giulia Rossetti, Bernhard Lüscher,[...]. Sci Rep 2017
74
20

The Conserved Coronavirus Macrodomain Promotes Virulence and Suppresses the Innate Immune Response during Severe Acute Respiratory Syndrome Coronavirus Infection.
Anthony R Fehr, Rudragouda Channappanavar, Gytis Jankevicius, Craig Fett, Jincun Zhao, Jeremiah Athmer, David K Meyerholz, Ivan Ahel, Stanley Perlman. mBio 2016
128
20

Proteomic analyses identify ARH3 as a serine mono-ADP-ribosylhydrolase.
Jeannette Abplanalp, Mario Leutert, Emilie Frugier, Kathrin Nowak, Roxane Feurer, Jiro Kato, Hans V A Kistemaker, Dmitri V Filippov, Joel Moss, Amedeo Caflisch,[...]. Nat Commun 2017
67
18


MacroD1 Is a Promiscuous ADP-Ribosyl Hydrolase Localized to Mitochondria.
Thomas Agnew, Deeksha Munnur, Kerryanne Crawford, Luca Palazzo, Andreja Mikoč, Ivan Ahel. Front Microbiol 2018
30
40


Structural basis for DNA damage-dependent poly(ADP-ribosyl)ation by human PARP-1.
Marie-France Langelier, Jamie L Planck, Swati Roy, John M Pascal. Science 2012
351
16

Macrodomain-containing proteins: regulating new intracellular functions of mono(ADP-ribosyl)ation.
Karla L H Feijs, Alexandra H Forst, Patricia Verheugd, Bernhard Lüscher. Nat Rev Mol Cell Biol 2013
106
16

Poly(ADP-ribose) regulates stress responses and microRNA activity in the cytoplasm.
Anthony K L Leung, Sejal Vyas, Jennifer E Rood, Arjun Bhutkar, Phillip A Sharp, Paul Chang. Mol Cell 2011
291
16

ADP-ribosylation signalling and human disease.
Luca Palazzo, Petra Mikolčević, Andreja Mikoč, Ivan Ahel. Open Biol 2019
36
30

Emerging roles of eraser enzymes in the dynamic control of protein ADP-ribosylation.
Julia O'Sullivan, Maria Tedim Ferreira, Jean-Philippe Gagné, Ajit K Sharma, Michael J Hendzel, Jean-Yves Masson, Guy G Poirier. Nat Commun 2019
56
19


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.