A citation-based method for searching scientific literature

Tanmay Nath, Alexander Mathis, An Chi Chen, Amir Patel, Matthias Bethge, Mackenzie Weygandt Mathis. Nat Protoc 2019
Times Cited: 203







List of co-cited articles
449 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


DeepLabCut: markerless pose estimation of user-defined body parts with deep learning.
Alexander Mathis, Pranav Mamidanna, Kevin M Cury, Taiga Abe, Venkatesh N Murthy, Mackenzie Weygandt Mathis, Matthias Bethge. Nat Neurosci 2018
628
71

DeepPoseKit, a software toolkit for fast and robust animal pose estimation using deep learning.
Jacob M Graving, Daniel Chae, Hemal Naik, Liang Li, Benjamin Koger, Blair R Costelloe, Iain D Couzin. Elife 2019
97
19

Mapping Sub-Second Structure in Mouse Behavior.
Alexander B Wiltschko, Matthew J Johnson, Giuliano Iurilli, Ralph E Peterson, Jesse M Katon, Stan L Pashkovski, Victoria E Abraira, Ryan P Adams, Sandeep Robert Datta. Neuron 2015
222
17

Fast animal pose estimation using deep neural networks.
Talmo D Pereira, Diego E Aldarondo, Lindsay Willmore, Mikhail Kislin, Samuel S-H Wang, Mala Murthy, Joshua W Shaevitz. Nat Methods 2019
144
17

DeepFly3D, a deep learning-based approach for 3D limb and appendage tracking in tethered, adult Drosophila.
Semih Günel, Helge Rhodin, Daniel Morales, João Campagnolo, Pavan Ramdya, Pascal Fua. Elife 2019
36
33

The Striatum Organizes 3D Behavior via Moment-to-Moment Action Selection.
Jeffrey E Markowitz, Winthrop F Gillis, Celia C Beron, Shay Q Neufeld, Keiramarie Robertson, Neha D Bhagat, Ralph E Peterson, Emalee Peterson, Minsuk Hyun, Scott W Linderman,[...]. Cell 2018
115
11

Computational Neuroethology: A Call to Action.
Sandeep Robert Datta, David J Anderson, Kristin Branson, Pietro Perona, Andrew Leifer. Neuron 2019
92
11

Automated markerless pose estimation in freely moving macaques with OpenMonkeyStudio.
Praneet C Bala, Benjamin R Eisenreich, Seng Bum Michael Yoo, Benjamin Y Hayden, Hyun Soo Park, Jan Zimmermann. Nat Commun 2020
26
38

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
9

Mapping the stereotyped behaviour of freely moving fruit flies.
Gordon J Berman, Daniel M Choi, William Bialek, Joshua W Shaevitz. J R Soc Interface 2014
173
9

Toward a science of computational ethology.
David J Anderson, Pietro Perona. Neuron 2014
164
9

Spontaneous behaviors drive multidimensional, brainwide activity.
Carsen Stringer, Marius Pachitariu, Nicholas Steinmetz, Charu Bai Reddy, Matteo Carandini, Kenneth D Harris. Science 2019
289
9

Deep learning tools for the measurement of animal behavior in neuroscience.
Mackenzie Weygandt Mathis, Alexander Mathis. Curr Opin Neurobiol 2020
66
13

Real-time analysis of the behaviour of groups of mice via a depth-sensing camera and machine learning.
Fabrice de Chaumont, Elodie Ey, Nicolas Torquet, Thibault Lagache, Stéphane Dallongeville, Albane Imbert, Thierry Legou, Anne-Marie Le Sourd, Philippe Faure, Thomas Bourgeron,[...]. Nat Biomed Eng 2019
28
28

Automated measurement of mouse social behaviors using depth sensing, video tracking, and machine learning.
Weizhe Hong, Ann Kennedy, Xavier P Burgos-Artizzu, Moriel Zelikowsky, Santiago G Navonne, Pietro Perona, David J Anderson. Proc Natl Acad Sci U S A 2015
111
8

Real-time, low-latency closed-loop feedback using markerless posture tracking.
Gary A Kane, Gonçalo Lopes, Jonny L Saunders, Alexander Mathis, Mackenzie W Mathis. Elife 2020
18
44

idTracker: tracking individuals in a group by automatic identification of unmarked animals.
Alfonso Pérez-Escudero, Julián Vicente-Page, Robert C Hinz, Sara Arganda, Gonzalo G de Polavieja. Nat Methods 2014
265
7

Single-trial neural dynamics are dominated by richly varied movements.
Simon Musall, Matthew T Kaufman, Ashley L Juavinett, Steven Gluf, Anne K Churchland. Nat Neurosci 2019
193
7

NIH Image to ImageJ: 25 years of image analysis.
Caroline A Schneider, Wayne S Rasband, Kevin W Eliceiri. Nat Methods 2012
6

Facial expressions of emotion states and their neuronal correlates in mice.
Nate Dolensek, Daniel A Gehrlach, Alexandra S Klein, Nadine Gogolla. Science 2020
71
8

Revealing the structure of pharmacobehavioral space through motion sequencing.
Alexander B Wiltschko, Tatsuya Tsukahara, Ayman Zeine, Rockwell Anyoha, Winthrop F Gillis, Jeffrey E Markowitz, Ralph E Peterson, Jesse Katon, Matthew J Johnson, Sandeep Robert Datta. Nat Neurosci 2020
25
24

Probabilistic Models of Larval Zebrafish Behavior Reveal Structure on Many Scales.
Robert Evan Johnson, Scott Linderman, Thomas Panier, Caroline Lei Wee, Erin Song, Kristian Joseph Herrera, Andrew Miller, Florian Engert. Curr Biol 2020
32
18

Big behavior: challenges and opportunities in a new era of deep behavior profiling.
Lukas von Ziegler, Oliver Sturman, Johannes Bohacek. Neuropsychopharmacology 2021
23
26

Big behavioral data: psychology, ethology and the foundations of neuroscience.
Alex Gomez-Marin, Joseph J Paton, Adam R Kampff, Rui M Costa, Zachary F Mainen. Nat Neurosci 2014
105
5

Ultrasensitive fluorescent proteins for imaging neuronal activity.
Tsai-Wen Chen, Trevor J Wardill, Yi Sun, Stefan R Pulver, Sabine L Renninger, Amy Baohan, Eric R Schreiter, Rex A Kerr, Michael B Orger, Vivek Jayaraman,[...]. Nature 2013
5


Descending Command Neurons in the Brainstem that Halt Locomotion.
Julien Bouvier, Vittorio Caggiano, Roberto Leiras, Vanessa Caldeira, Carmelo Bellardita, Kira Balueva, Andrea Fuchs, Ole Kiehn. Cell 2015
104
5

Automated image-based tracking and its application in ecology.
Anthony I Dell, John A Bender, Kristin Branson, Iain D Couzin, Gonzalo G de Polavieja, Lucas P J J Noldus, Alfonso Pérez-Escudero, Pietro Perona, Andrew D Straw, Martin Wikelski,[...]. Trends Ecol Evol 2014
145
5

EthoLoop: automated closed-loop neuroethology in naturalistic environments.
Ali Nourizonoz, Robert Zimmermann, Chun Lum Andy Ho, Sebastien Pellat, Yannick Ormen, Clément Prévost-Solié, Gilles Reymond, Fabien Pifferi, Fabienne Aujard, Anthony Herrel,[...]. Nat Methods 2020
14
35

A 3D-video-based computerized analysis of social and sexual interactions in rats.
Jumpei Matsumoto, Susumu Urakawa, Yusaku Takamura, Renato Malcher-Lopes, Etsuro Hori, Carlos Tomaz, Taketoshi Ono, Hisao Nishijo. PLoS One 2013
32
15

idtracker.ai: tracking all individuals in small or large collectives of unmarked animals.
Francisco Romero-Ferrero, Mattia G Bergomi, Robert C Hinz, Francisco J H Heras, Gonzalo G de Polavieja. Nat Methods 2019
63
7

Predictability and hierarchy in Drosophila behavior.
Gordon J Berman, William Bialek, Joshua W Shaevitz. Proc Natl Acad Sci U S A 2016
69
7

EthoVision: a versatile video tracking system for automation of behavioral experiments.
L P Noldus, A J Spink, R A Tegelenbosch. Behav Res Methods Instrum Comput 2001
291
5

A Primer on Motion Capture with Deep Learning: Principles, Pitfalls, and Perspectives.
Alexander Mathis, Steffen Schneider, Jessy Lauer, Mackenzie Weygandt Mathis. Neuron 2020
26
19

Discovery of brainwide neural-behavioral maps via multiscale unsupervised structure learning.
Joshua T Vogelstein, Youngser Park, Tomoko Ohyama, Rex A Kerr, James W Truman, Carey E Priebe, Marta Zlatic. Science 2014
117
4

High-performance calcium sensors for imaging activity in neuronal populations and microcompartments.
Hod Dana, Yi Sun, Boaz Mohar, Brad K Hulse, Aaron M Kerlin, Jeremy P Hasseman, Getahun Tsegaye, Arthur Tsang, Allan Wong, Ronak Patel,[...]. Nat Methods 2019
264
4

Miniaturized integration of a fluorescence microscope.
Kunal K Ghosh, Laurie D Burns, Eric D Cocker, Axel Nimmerjahn, Yaniv Ziv, Abbas El Gamal, Mark J Schnitzer. Nat Methods 2011
477
4

Pupil fluctuations track rapid changes in adrenergic and cholinergic activity in cortex.
Jacob Reimer, Matthew J McGinley, Yang Liu, Charles Rodenkirch, Qi Wang, David A McCormick, Andreas S Tolias. Nat Commun 2016
295
4

Brainstem nucleus MdV mediates skilled forelimb motor tasks.
Maria Soledad Esposito, Paolo Capelli, Silvia Arber. Nature 2014
144
4

Locomotor speed control circuits in the caudal brainstem.
Paolo Capelli, Chiara Pivetta, Maria Soledad Esposito, Silvia Arber. Nature 2017
105
4

Neuroscience Needs Behavior: Correcting a Reductionist Bias.
John W Krakauer, Asif A Ghazanfar, Alex Gomez-Marin, Malcolm A MacIver, David Poeppel. Neuron 2017
423
4


Restoring voluntary control of locomotion after paralyzing spinal cord injury.
Rubia van den Brand, Janine Heutschi, Quentin Barraud, Jack DiGiovanna, Kay Bartholdi, Michèle Huerlimann, Lucia Friedli, Isabel Vollenweider, Eduardo Martin Moraud, Simone Duis,[...]. Science 2012
430
4

Real-Time Selective Markerless Tracking of Forepaws of Head Fixed Mice Using Deep Neural Networks.
Brandon J Forys, Dongsheng Xiao, Pankaj Gupta, Timothy H Murphy. eNeuro 2020
9
44

Arm movements induced by noninvasive optogenetic stimulation of the motor cortex in the common marmoset.
Teppei Ebina, Keitaro Obara, Akiya Watakabe, Yoshito Masamizu, Shin-Ichiro Terada, Ryota Matoba, Masafumi Takaji, Nobuhiko Hatanaka, Atsushi Nambu, Hiroaki Mizukami,[...]. Proc Natl Acad Sci U S A 2019
16
25

Marmosets: A Neuroscientific Model of Human Social Behavior.
Cory T Miller, Winrich A Freiwald, David A Leopold, Jude F Mitchell, Afonso C Silva, Xiaoqin Wang. Neuron 2016
135
4


Efficient cortical coding of 3D posture in freely behaving rats.
Bartul Mimica, Benjamin A Dunn, Tuce Tombaz, V P T N C Srikanth Bojja, Jonathan R Whitlock. Science 2018
45
8

Automated long-term tracking and social behavioural phenotyping of animal colonies within a semi-natural environment.
Aharon Weissbrod, Alexander Shapiro, Genadiy Vasserman, Liat Edry, Molly Dayan, Assif Yitzhaky, Libi Hertzberg, Ofer Feinerman, Tali Kimchi. Nat Commun 2013
96
4

Brainstem neurons that command mammalian locomotor asymmetries.
Jared M Cregg, Roberto Leiras, Alexia Montalant, Paulina Wanken, Ian R Wickersham, Ole Kiehn. Nat Neurosci 2020
39
10


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.