A citation-based method for searching scientific literature

Rémi Buisson, Adam Langenbucher, Danae Bowen, Eugene E Kwan, Cyril H Benes, Lee Zou, Michael S Lawrence. Science 2019
Times Cited: 131







List of co-cited articles
904 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Signatures of mutational processes in human cancer.
Ludmil B Alexandrov, Serena Nik-Zainal, David C Wedge, Samuel A J R Aparicio, Sam Behjati, Andrew V Biankin, Graham R Bignell, Niccolò Bolli, Ake Borg, Anne-Lise Børresen-Dale,[...]. Nature 2013
44

The repertoire of mutational signatures in human cancer.
Ludmil B Alexandrov, Jaegil Kim, Nicholas J Haradhvala, Mi Ni Huang, Alvin Wei Tian Ng, Yang Wu, Arnoud Boot, Kyle R Covington, Dmitry A Gordenin, Erik N Bergstrom,[...]. Nature 2020
30

An APOBEC cytidine deaminase mutagenesis pattern is widespread in human cancers.
Steven A Roberts, Michael S Lawrence, Leszek J Klimczak, Sara A Grimm, David Fargo, Petar Stojanov, Adam Kiezun, Gregory V Kryukov, Scott L Carter, Gordon Saksena,[...]. Nat Genet 2013
761
28

Evidence for APOBEC3B mutagenesis in multiple human cancers.
Michael B Burns, Nuri A Temiz, Reuben S Harris. Nat Genet 2013
500
27

Mutational processes molding the genomes of 21 breast cancers.
Serena Nik-Zainal, Ludmil B Alexandrov, David C Wedge, Peter Van Loo, Christopher D Greenman, Keiran Raine, David Jones, Jonathan Hinton, John Marshall, Lucy A Stebbings,[...]. Cell 2012
25

Mutational heterogeneity in cancer and the search for new cancer-associated genes.
Michael S Lawrence, Petar Stojanov, Paz Polak, Gregory V Kryukov, Kristian Cibulskis, Andrey Sivachenko, Scott L Carter, Chip Stewart, Craig H Mermel, Steven A Roberts,[...]. Nature 2013
25

APOBEC3B is an enzymatic source of mutation in breast cancer.
Michael B Burns, Lela Lackey, Michael A Carpenter, Anurag Rathore, Allison M Land, Brandon Leonard, Eric W Refsland, Delshanee Kotandeniya, Natalia Tretyakova, Jason B Nikas,[...]. Nature 2013
560
24


APOBEC Enzymes: Mutagenic Fuel for Cancer Evolution and Heterogeneity.
Charles Swanton, Nicholas McGranahan, Gabriel J Starrett, Reuben S Harris. Cancer Discov 2015
278
20

Characterizing Mutational Signatures in Human Cancer Cell Lines Reveals Episodic APOBEC Mutagenesis.
Mia Petljak, Ludmil B Alexandrov, Jonathan S Brammeld, Stacey Price, David C Wedge, Sebastian Grossmann, Kevin J Dawson, Young Seok Ju, Francesco Iorio, Jose M C Tubio,[...]. Cell 2019
173
19

An APOBEC3A hypermutation signature is distinguishable from the signature of background mutagenesis by APOBEC3B in human cancers.
Kin Chan, Steven A Roberts, Leszek J Klimczak, Joan F Sterling, Natalie Saini, Ewa P Malc, Jaegil Kim, David J Kwiatkowski, David C Fargo, Piotr A Mieczkowski,[...]. Nat Genet 2015
235
17

APOBEC3A catalyzes mutation and drives carcinogenesis in vivo.
Emily K Law, Rena Levin-Klein, Matthew C Jarvis, Hyoung Kim, Prokopios P Argyris, Michael A Carpenter, Gabriel J Starrett, Nuri A Temiz, Lindsay K Larson, Cameron Durfee,[...]. J Exp Med 2020
43
39

APOBEC3A cytidine deaminase induces RNA editing in monocytes and macrophages.
Shraddha Sharma, Santosh K Patnaik, R Thomas Taggart, Eric D Kannisto, Sally M Enriquez, Paul Gollnick, Bora E Baysal. Nat Commun 2015
140
15

Landscape of somatic mutations in 560 breast cancer whole-genome sequences.
Serena Nik-Zainal, Helen Davies, Johan Staaf, Manasa Ramakrishna, Dominik Glodzik, Xueqing Zou, Inigo Martincorena, Ludmil B Alexandrov, Sancha Martin, David C Wedge,[...]. Nature 2016
14

Universal Patterns of Selection in Cancer and Somatic Tissues.
Iñigo Martincorena, Keiran M Raine, Moritz Gerstung, Kevin J Dawson, Kerstin Haase, Peter Van Loo, Helen Davies, Michael R Stratton, Peter J Campbell. Cell 2017
560
14

Structural basis for targeted DNA cytosine deamination and mutagenesis by APOBEC3A and APOBEC3B.
Ke Shi, Michael A Carpenter, Surajit Banerjee, Nadine M Shaban, Kayo Kurahashi, Daniel J Salamango, Jennifer L McCann, Gabriel J Starrett, Justin V Duffy, Özlem Demir,[...]. Nat Struct Mol Biol 2017
139
14

The APOBEC Protein Family: United by Structure, Divergent in Function.
Jason D Salter, Ryan P Bennett, Harold C Smith. Trends Biochem Sci 2016
193
14

Clustered mutations in yeast and in human cancers can arise from damaged long single-strand DNA regions.
Steven A Roberts, Joan Sterling, Cole Thompson, Shawn Harris, Deepak Mav, Ruchir Shah, Leszek J Klimczak, Gregory V Kryukov, Ewa Malc, Piotr A Mieczkowski,[...]. Mol Cell 2012
290
14

APOBEC3A is a prominent cytidine deaminase in breast cancer.
Luis M Cortez, Amber L Brown, Madeline A Dennis, Christopher D Collins, Alexander J Brown, Debra Mitchell, Tony M Mertz, Steven A Roberts. PLoS Genet 2019
41
34

Quantification of ongoing APOBEC3A activity in tumor cells by monitoring RNA editing at hotspots.
Pégah Jalili, Danae Bowen, Adam Langenbucher, Shinho Park, Kevin Aguirre, Ryan B Corcoran, Angela G Fleischman, Michael S Lawrence, Lee Zou, Rémi Buisson. Nat Commun 2020
29
48

Passenger Hotspot Mutations in Cancer.
Julian M Hess, Andre Bernards, Jaegil Kim, Mendy Miller, Amaro Taylor-Weiner, Nicholas J Haradhvala, Michael S Lawrence, Gad Getz. Cancer Cell 2019
37
35

Mutational Strand Asymmetries in Cancer Genomes Reveal Mechanisms of DNA Damage and Repair.
Nicholas J Haradhvala, Paz Polak, Petar Stojanov, Kyle R Covington, Eve Shinbrot, Julian M Hess, Esther Rheinbay, Jaegil Kim, Yosef E Maruvka, Lior Z Braunstein,[...]. Cell 2016
225
13

DNA deaminases induce break-associated mutation showers with implication of APOBEC3B and 3A in breast cancer kataegis.
Benjamin Jm Taylor, Serena Nik-Zainal, Yee Ling Wu, Lucy A Stebbings, Keiran Raine, Peter J Campbell, Cristina Rada, Michael R Stratton, Michael S Neuberger. Elife 2013
246
13

An extended APOBEC3A mutation signature in cancer.
Adam Langenbucher, Danae Bowen, Ramin Sakhtemani, Elodie Bournique, Jillian F Wise, Lee Zou, Ashok S Bhagwat, Rémi Buisson, Michael S Lawrence. Nat Commun 2021
23
56

COSMIC: the Catalogue Of Somatic Mutations In Cancer.
John G Tate, Sally Bamford, Harry C Jubb, Zbyslaw Sondka, David M Beare, Nidhi Bindal, Harry Boutselakis, Charlotte G Cole, Celestino Creatore, Elisabeth Dawson,[...]. Nucleic Acids Res 2019
12

APOBEC-mediated cytosine deamination links PIK3CA helical domain mutations to human papillomavirus-driven tumor development.
Stephen Henderson, Ankur Chakravarthy, Xiaoping Su, Chris Boshoff, Tim Robert Fenton. Cell Rep 2014
234
12

The DNA cytosine deaminase APOBEC3B promotes tamoxifen resistance in ER-positive breast cancer.
Emily K Law, Anieta M Sieuwerts, Kelly LaPara, Brandon Leonard, Gabriel J Starrett, Amy M Molan, Nuri A Temiz, Rachel Isaksson Vogel, Marion E Meijer-van Gelder, Fred C G J Sweep,[...]. Sci Adv 2016
121
12

Crystal structure of APOBEC3A bound to single-stranded DNA reveals structural basis for cytidine deamination and specificity.
Takahide Kouno, Tania V Silvas, Brendan J Hilbert, Shivender M D Shandilya, Markus F Bohn, Brian A Kelch, William E Royer, Mohan Somasundaran, Nese Kurt Yilmaz, Hiroshi Matsuo,[...]. Nat Commun 2017
88
13

Comprehensive Characterization of Cancer Driver Genes and Mutations.
Matthew H Bailey, Collin Tokheim, Eduard Porta-Pardo, Sohini Sengupta, Denis Bertrand, Amila Weerasinghe, Antonio Colaprico, Michael C Wendl, Jaegil Kim, Brendan Reardon,[...]. Cell 2018
901
11

Identifying recurrent mutations in cancer reveals widespread lineage diversity and mutational specificity.
Matthew T Chang, Saurabh Asthana, Sizhi Paul Gao, Byron H Lee, Jocelyn S Chapman, Cyriac Kandoth, JianJiong Gao, Nicholas D Socci, David B Solit, Adam B Olshen,[...]. Nat Biotechnol 2016
469
11

APOBEC-induced mutations in human cancers are strongly enriched on the lagging DNA strand during replication.
Vladimir B Seplyarskiy, Ruslan A Soldatov, Konstantin Y Popadin, Stylianos E Antonarakis, Georgii A Bazykin, Sergey I Nikolaev. Genome Res 2016
109
11

APOBECs and virus restriction.
Reuben S Harris, Jaquelin P Dudley. Virology 2015
295
11

Clock-like mutational processes in human somatic cells.
Ludmil B Alexandrov, Philip H Jones, David C Wedge, Julian E Sale, Peter J Campbell, Serena Nik-Zainal, Michael R Stratton. Nat Genet 2015
527
10

APOBEC3A and APOBEC3B Activities Render Cancer Cells Susceptible to ATR Inhibition.
Rémi Buisson, Michael S Lawrence, Cyril H Benes, Lee Zou. Cancer Res 2017
61
16

Substrate sequence selectivity of APOBEC3A implicates intra-DNA interactions.
Tania V Silvas, Shurong Hou, Wazo Myint, Ellen Nalivaika, Mohan Somasundaran, Brian A Kelch, Hiroshi Matsuo, Nese Kurt Yilmaz, Celia A Schiffer. Sci Rep 2018
36
27

Analyses of non-coding somatic drivers in 2,658 cancer whole genomes.
Esther Rheinbay, Morten Muhlig Nielsen, Federico Abascal, Jeremiah A Wala, Ofer Shapira, Grace Tiao, Henrik Hornshøj, Julian M Hess, Randi Istrup Juul, Ziao Lin,[...]. Nature 2020
226
10

DNA deamination mediates innate immunity to retroviral infection.
Reuben S Harris, Kate N Bishop, Ann M Sheehy, Heather M Craig, Svend K Petersen-Mahrt, Ian N Watt, Michael S Neuberger, Michael H Malim. Cell 2003
10


APOBEC Enzymes as Targets for Virus and Cancer Therapy.
Margaret E Olson, Reuben S Harris, Daniel A Harki. Cell Chem Biol 2018
90
11

The cancer genome.
Michael R Stratton, Peter J Campbell, P Andrew Futreal. Nature 2009
9

Cancer genome landscapes.
Bert Vogelstein, Nickolas Papadopoulos, Victor E Velculescu, Shibin Zhou, Luis A Diaz, Kenneth W Kinzler. Science 2013
9

APOBEC3A functions as a restriction factor of human papillomavirus.
Cody J Warren, Tao Xu, Kejun Guo, Laura M Griffin, Joseph A Westrich, Denis Lee, Paul F Lambert, Mario L Santiago, Dohun Pyeon. J Virol 2015
116
9


APOBEC3 proteins mediate the clearance of foreign DNA from human cells.
Mark D Stenglein, Michael B Burns, Ming Li, Joy Lengyel, Reuben S Harris. Nat Struct Mol Biol 2010
247
9

APOBEC3A damages the cellular genome during DNA replication.
Abby M Green, Sébastien Landry, Konstantin Budagyan, Daphne C Avgousti, Sophia Shalhout, Ashok S Bhagwat, Matthew D Weitzman. Cell Cycle 2016
45
20

APOBEC3A can activate the DNA damage response and cause cell-cycle arrest.
Sébastien Landry, Iñigo Narvaiza, Daniel C Linfesty, Matthew D Weitzman. EMBO Rep 2011
159
9

Cell-of-origin chromatin organization shapes the mutational landscape of cancer.
Paz Polak, Rosa Karlić, Amnon Koren, Robert Thurman, Richard Sandstrom, Michael Lawrence, Alex Reynolds, Eric Rynes, Kristian Vlahoviček, John A Stamatoyannopoulos,[...]. Nature 2015
316
9

Perspective: APOBEC mutagenesis in drug resistance and immune escape in HIV and cancer evolution.
S Venkatesan, R Rosenthal, N Kanu, N McGranahan, J Bartek, S A Quezada, J Hare, R S Harris, C Swanton. Ann Oncol 2018
81
11


APOBEC3-dependent kataegis and TREX1-driven chromothripsis during telomere crisis.
John Maciejowski, Aikaterini Chatzipli, Alexandra Dananberg, Kevan Chu, Eleonore Toufektchan, Leszek J Klimczak, Dmitry A Gordenin, Peter J Campbell, Titia de Lange. Nat Genet 2020
61
14


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.