A citation-based method for searching scientific literature

Estie Schick, Sean D McCaffery, Erin E Keblish, Cassandra Thakurdin, Mark M Emerson. Sci Rep 2019
Times Cited: 8







List of co-cited articles
57 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.
Mark M Emerson, Natalia Surzenko, Jillian J Goetz, Jeffrey Trimarchi, Constance L Cepko. Dev Cell 2013
66
75


Cone photoreceptor types in zebrafish are generated by symmetric terminal divisions of dedicated precursors.
Sachihiro C Suzuki, Adam Bleckert, Philip R Williams, Masaki Takechi, Shoji Kawamura, Rachel O L Wong. Proc Natl Acad Sci U S A 2013
114
75

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates.
Brian P Hafler, Natalia Surzenko, Kevin T Beier, Claudio Punzo, Jeffrey M Trimarchi, Jennifer H Kong, Constance L Cepko. Proc Natl Acad Sci U S A 2012
78
75

Identification and characterization of early photoreceptor cis-regulatory elements and their relation to Onecut1.
Nathalie Jean-Charles, Diego F Buenaventura, Mark M Emerson. Neural Dev 2018
8
62

Otx2 homeobox gene controls retinal photoreceptor cell fate and pineal gland development.
Akihiro Nishida, Akiko Furukawa, Chieko Koike, Yasuo Tano, Shinichi Aizawa, Isao Matsuo, Takahisa Furukawa. Nat Neurosci 2003
402
50


Retinal progenitor cells can produce restricted subsets of horizontal cells.
S B Rompani, C L Cepko. Proc Natl Acad Sci U S A 2008
47
50

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
50

Electroporation and RNA interference in the rodent retina in vivo and in vitro.
Takahiko Matsuda, Constance L Cepko. Proc Natl Acad Sci U S A 2004
716
50


OTX2 represses sister cell fate choices in the developing retina to promote photoreceptor specification.
Miruna Georgiana Ghinia Tegla, Diego F Buenaventura, Diana Y Kim, Cassandra Thakurdin, Kevin C Gonzalez, Mark M Emerson. Elife 2020
10
50

How variable clones build an invariant retina.
Jie He, Gen Zhang, Alexandra D Almeida, Michel Cayouette, Benjamin D Simons, William A Harris. Neuron 2012
137
50


Onecut1 is essential for horizontal cell genesis and retinal integrity.
Fuguo Wu, Renzhong Li, Yumiko Umino, Tadeusz J Kaczynski, Darshan Sapkota, Shengguo Li, Mengqing Xiang, Steven J Fliesler, David M Sherry, Maureen Gannon,[...]. J Neurosci 2013
42
37


Onecut1 and Onecut2 redundantly regulate early retinal cell fates during development.
Darshan Sapkota, Hemabindu Chintala, Fuguo Wu, Steven J Fliesler, Zihua Hu, Xiuqian Mu. Proc Natl Acad Sci U S A 2014
53
37


Analysis of thyroid response element activity during retinal development.
Nathan A Billings, Mark M Emerson, Constance L Cepko. PLoS One 2010
21
37

Clonal analysis in the chicken retina reveals tangential dispersion of clonally related cells.
D M Fekete, J Perez-Miguelsanz, E F Ryder, C L Cepko. Dev Biol 1994
101
37

Cell fate determination in the vertebrate retina.
Erin A Bassett, Valerie A Wallace. Trends Neurosci 2012
163
37

Functional roles of Otx2 transcription factor in postnatal mouse retinal development.
Chieko Koike, Akihiro Nishida, Shinji Ueno, Hiromitsu Saito, Rikako Sanuki, Shigeru Sato, Akiko Furukawa, Shinichi Aizawa, Isao Matsuo, Noboru Suzuki,[...]. Mol Cell Biol 2007
129
37

Cis-regulatory analysis of Onecut1 expression in fate-restricted retinal progenitor cells.
Sruti Patoori, Nathalie Jean-Charles, Ariana Gopal, Sacha Sulaiman, Sneha Gopal, Brian Wang, Benjamin Souferi, Mark M Emerson. Neural Dev 2020
4
75

Single-Cell RNA-Seq Analysis of Retinal Development Identifies NFI Factors as Regulating Mitotic Exit and Late-Born Cell Specification.
Brian S Clark, Genevieve L Stein-O'Brien, Fion Shiau, Gabrielle H Cannon, Emily Davis-Marcisak, Thomas Sherman, Clayton P Santiago, Thanh V Hoang, Fatemeh Rajaii, Rebecca E James-Esposito,[...]. Neuron 2019
104
25

Cell fate determination in the vertebrate retina.
C L Cepko, C P Austin, X Yang, M Alexiades, D Ezzeddine. Proc Natl Acad Sci U S A 1996
750
25

Blimp1 controls photoreceptor versus bipolar cell fate choice during retinal development.
Joseph A Brzezinski, Deepak A Lamba, Thomas A Reh. Development 2010
84
25

Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells.
Emily Welby, Jorn Lakowski, Valentina Di Foggia, Dimitri Budinger, Anai Gonzalez-Cordero, Aaron T L Lun, Michael Epstein, Aara Patel, Elisa Cuevas, Kamil Kruczek,[...]. Stem Cell Reports 2017
51
25

NeuroD factors regulate cell fate and neurite stratification in the developing retina.
Timothy J Cherry, Sui Wang, Ingo Bormuth, Markus Schwab, James Olson, Constance L Cepko. J Neurosci 2011
52
25

Tfap2a and 2b act downstream of Ptf1a to promote amacrine cell differentiation during retinogenesis.
Kangxin Jin, Haisong Jiang, Dongchang Xiao, Min Zou, Jun Zhu, Mengqing Xiang. Mol Brain 2015
28
25

Ptf1a determines horizontal and amacrine cell fates during mouse retinal development.
Yoshio Fujitani, Shuko Fujitani, Huijun Luo, Feng Qiu, Jared Burlison, Qiaoming Long, Yoshiya Kawaguchi, Helena Edlund, Raymond J MacDonald, Takahisa Furukawa,[...]. Development 2006
166
25

Nuclear migration during retinal development.
Lisa M Baye, Brian A Link. Brain Res 2008
94
25

Lim1 is essential for the correct laminar positioning of retinal horizontal cells.
Ross A Poché, Kin Ming Kwan, Mary A Raven, Yasuhide Furuta, Benjamin E Reese, Richard R Behringer. J Neurosci 2007
75
25

Retinoid X receptor (gamma) is necessary to establish the S-opsin gradient in cone photoreceptors of the developing mouse retina.
Melanie R Roberts, Anita Hendrickson, Christopher R McGuire, Thomas A Reh. Invest Ophthalmol Vis Sci 2005
147
25


Foxn4 controls the genesis of amacrine and horizontal cells by retinal progenitors.
Shengguo Li, Zeqian Mo, Xuejie Yang, Sandy M Price, Michael M Shen, Mengqing Xiang. Neuron 2004
178
25

ECR Browser: a tool for visualizing and accessing data from comparisons of multiple vertebrate genomes.
Ivan Ovcharenko, Marcelo A Nobrega, Gabriela G Loots, Lisa Stubbs. Nucleic Acids Res 2004
370
25

Quantifying similarity between motifs.
Shobhit Gupta, John A Stamatoyannopoulos, Timothy L Bailey, William Stafford Noble. Genome Biol 2007
880
25

Thyroid hormone components are expressed in three sequential waves during development of the chick retina.
Jeffrey M Trimarchi, Sanjiv Harpavat, Nathan A Billings, Constance L Cepko. BMC Dev Biol 2008
47
25

Enhancer transcription identifies cis-regulatory elements for photoreceptor cell types.
Carlos Perez-Cervantes, Linsin A Smith, Rangarajan D Nadadur, Andrew E O Hughes, Sui Wang, Joseph C Corbo, Constance Cepko, Nicolas Lonfat, Ivan P Moskowitz. Development 2020
6
33

The human genome browser at UCSC.
W James Kent, Charles W Sugnet, Terrence S Furey, Krishna M Roskin, Tom H Pringle, Alan M Zahler, David Haussler. Genome Res 2002
25

NeuroD1 regulates expression of thyroid hormone receptor 2 and cone opsins in the developing mouse retina.
Hong Liu, Paige Etter, Susan Hayes, Iwan Jones, Branden Nelson, Byron Hartman, Douglas Forrest, Thomas A Reh. J Neurosci 2008
48
25


Fitting a mixture model by expectation maximization to discover motifs in biopolymers.
T L Bailey, C Elkan. Proc Int Conf Intell Syst Mol Biol 1994
25


Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position.
Jason D Buenrostro, Paul G Giresi, Lisa C Zaba, Howard Y Chang, William J Greenleaf. Nat Methods 2013
25

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
25

Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.
Yufeng Lu, Fion Shiau, Wenyang Yi, Suying Lu, Qian Wu, Joel D Pearson, Alyssa Kallman, Suijuan Zhong, Thanh Hoang, Zhentao Zuo,[...]. Dev Cell 2020
38
25

All Brn3 genes can promote retinal ganglion cell differentiation in the chick.
W Liu, S L Khare, X Liang, M A Peters, X Liu, C L Cepko, M Xiang. Development 2000
123
25

Otx genes are required for tissue specification in the developing eye.
J R Martinez-Morales, M Signore, D Acampora, A Simeone, P Bovolenta. Development 2001
183
25

Quantitative analysis of the ThrbCRM1-centered gene regulatory network.
Benjamin Souferi, Mark M Emerson. Biol Open 2019
2
100


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.