A citation-based method for searching scientific literature

Deborah Argaud, Marie-Chloé Boulanger, Arnaud Chignon, Ghada Mkannez, Patrick Mathieu. Nucleic Acids Res 2019
Times Cited: 9







List of co-cited articles
71 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


RNA helicase DDX21 coordinates transcription and ribosomal RNA processing.
Eliezer Calo, Ryan A Flynn, Lance Martin, Robert C Spitale, Howard Y Chang, Joanna Wysocka. Nature 2015
152
44

SIRT7 and the DEAD-box helicase DDX21 cooperate to resolve genomic R loops and safeguard genome stability.
Chenlin Song, Agnes Hotz-Wagenblatt, Renate Voit, Ingrid Grummt. Genes Dev 2017
80
44

Arginine methylation of the DDX5 helicase RGG/RG motif by PRMT5 regulates resolution of RNA:DNA hybrids.
Sofiane Y Mersaoui, Zhenbao Yu, Yan Coulombe, Martin Karam, Franciele F Busatto, Jean-Yves Masson, Stéphane Richard. EMBO J 2019
53
33

RNA Helicase DDX1 Converts RNA G-Quadruplex Structures into R-Loops to Promote IgH Class Switch Recombination.
Claudia Ribeiro de Almeida, Somdutta Dhir, Ashish Dhir, Amin E Moghaddam, Quentin Sattentau, Anton Meinhart, Nicholas J Proudfoot. Mol Cell 2018
73
33

The DEAD-box protein Dbp2p is linked to noncoding RNAs, the helicase Sen1p, and R-loops.
Frank A Tedeschi, Sara C Cloutier, Elizabeth J Tran, Eckhard Jankowsky. RNA 2018
11
33


DDX5 helicase resolves G-quadruplex and is involved in MYC gene transcriptional activation.
Guanhui Wu, Zheng Xing, Elizabeth J Tran, Danzhou Yang. Proc Natl Acad Sci U S A 2019
45
33

DDX1, DDX21, and DHX36 helicases form a complex with the adaptor molecule TRIF to sense dsRNA in dendritic cells.
Zhiqiang Zhang, Taeil Kim, Musheng Bao, Valeria Facchinetti, Sung Yun Jung, Amir Ali Ghaffari, Jun Qin, Genhong Cheng, Yong-Jun Liu. Immunity 2011
227
33

The association of late-acting snoRNPs with human pre-ribosomal complexes requires the RNA helicase DDX21.
Katherine E Sloan, Matthias S Leisegang, Carmen Doebele, Ana S Ramírez, Stefan Simm, Charlotta Safferthal, Jens Kretschmer, Tobias Schorge, Stavroula Markoutsa, Sara Haag,[...]. Nucleic Acids Res 2015
46
33

Activation of PARP-1 by snoRNAs Controls Ribosome Biogenesis and Cell Growth via the RNA Helicase DDX21.
Dae-Seok Kim, Cristel V Camacho, Anusha Nagari, Venkat S Malladi, Sridevi Challa, W Lee Kraus. Mol Cell 2019
70
33

From unwinding to clamping - the DEAD box RNA helicase family.
Patrick Linder, Eckhard Jankowsky. Nat Rev Mol Cell Biol 2011
577
33

A double-negative feedback loop between DEAD-box protein DDX21 and Snail regulates epithelial-mesenchymal transition and metastasis in breast cancer.
Hao Zhang, Yanqiu Zhang, Chen Chen, Xiaoyun Zhu, Chao Zhang, Yuanzheng Xia, Yucheng Zhao, Ourania M Andrisani, Lingyi Kong. Cancer Lett 2018
17
33

Elevated DDX21 regulates c-Jun activity and rRNA processing in human breast cancers.
Yandong Zhang, Kathleen C Baysac, Lian-Fai Yee, Anthony J Saporita, Jason D Weber. Breast Cancer Res 2014
35
33

Human DDX21 binds and unwinds RNA guanine quadruplexes.
Ewan K S McRae, Evan P Booy, Aniel Moya-Torres, Peyman Ezzati, Jörg Stetefeld, Sean A McKenna. Nucleic Acids Res 2017
46
33

R-loop formation is a distinctive characteristic of unmethylated human CpG island promoters.
Paul A Ginno, Paul L Lott, Holly C Christensen, Ian Korf, Frédéric Chédin. Mol Cell 2012
432
22

rMATS: robust and flexible detection of differential alternative splicing from replicate RNA-Seq data.
Shihao Shen, Juw Won Park, Zhi-xiang Lu, Lan Lin, Michael D Henry, Ying Nian Wu, Qing Zhou, Yi Xing. Proc Natl Acad Sci U S A 2014
667
22

Human proteins that interact with RNA/DNA hybrids.
Isabel X Wang, Christopher Grunseich, Jennifer Fox, Joshua Burdick, Zhengwei Zhu, Niema Ravazian, Markus Hafner, Vivian G Cheung. Genome Res 2018
55
22

R loops: new modulators of genome dynamics and function.
José M Santos-Pereira, Andrés Aguilera. Nat Rev Genet 2015
376
22




DHX9 helicase promotes R-loop formation in cells with impaired RNA splicing.
Prasun Chakraborty, Jeffrey T J Huang, Kevin Hiom. Nat Commun 2018
51
22

An ATR-dependent function for the Ddx19 RNA helicase in nuclear R-loop metabolism.
Dana Hodroj, Bénédicte Recolin, Kamar Serhal, Susan Martinez, Nikolay Tsanov, Raghida Abou Merhi, Domenico Maiorano. EMBO J 2017
64
22

The DEAD-box RNA helicase Dbp2 connects RNA quality control with repression of aberrant transcription.
Sara C Cloutier, Wai Kit Ma, Luyen T Nguyen, Elizabeth J Tran. J Biol Chem 2012
41
22


Transcription Dynamics Prevent RNA-Mediated Genomic Instability through SRPK2-Dependent DDX23 Phosphorylation.
Sreerama Chaitanya Sridhara, Sílvia Carvalho, Ana Rita Grosso, Lina Marcela Gallego-Paez, Maria Carmo-Fonseca, Sérgio Fernandes de Almeida. Cell Rep 2017
54
22

DEAD Box 1 Facilitates Removal of RNA and Homologous Recombination at DNA Double-Strand Breaks.
Lei Li, Devon R Germain, Ho-Yin Poon, Matthew R Hildebrandt, Elizabeth A Monckton, Darin McDonald, Michael J Hendzel, Roseline Godbout. Mol Cell Biol 2016
72
22


Targeting RNA helicases in cancer: The translation trap.
Marise R Heerma van Voss, Paul J van Diest, Venu Raman. Biochim Biophys Acta Rev Cancer 2017
33
22

Clinical validation of colorectal cancer biomarkers identified from bioinformatics analysis of public expression data.
Yeonjoo Jung, Sanghyuk Lee, Hyung-Seok Choi, Soon-Nam Kim, Eunyoung Lee, Youngah Shin, Jihae Seo, Bumjin Kim, Yeonhwa Jung, Wan Kyu Kim,[...]. Clin Cancer Res 2011
56
22

The DDX5/Dbp2 subfamily of DEAD-box RNA helicases.
Zheng Xing, Wai Kit Ma, Elizabeth J Tran. Wiley Interdiscip Rev RNA 2019
32
22


Tissue-selective effects of nucleolar stress and rDNA damage in developmental disorders.
Eliezer Calo, Bo Gu, Margot E Bowen, Fardin Aryan, Antoine Zalc, Jialiang Liang, Ryan A Flynn, Tomek Swigut, Howard Y Chang, Laura D Attardi,[...]. Nature 2018
61
22

SLERT Regulates DDX21 Rings Associated with Pol I Transcription.
Yu-Hang Xing, Run-Wen Yao, Yang Zhang, Chun-Jie Guo, Shan Jiang, Guang Xu, Rui Dong, Li Yang, Ling-Ling Chen. Cell 2017
112
22

Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production.
Souad Naji, Géza Ambrus, Peter Cimermančič, Jason R Reyes, Jeffrey R Johnson, Rebecca Filbrandt, Michael D Huber, Paul Vesely, Nevan J Krogan, John R Yates,[...]. Mol Cell Proteomics 2012
92
22

RNA helicase proteins as chaperones and remodelers.
Inga Jarmoskaite, Rick Russell. Annu Rev Biochem 2014
138
22

The conformational plasticity of eukaryotic RNA-dependent ATPases.
Sevim Ozgur, Gretel Buchwald, Sebastian Falk, Sutapa Chakrabarti, Jesuraj Rajan Prabu, Elena Conti. FEBS J 2015
56
22

Dissecting the Role of DDX21 in Regulating Human Cytomegalovirus Replication.
Hongyun Hao, Tian Han, Baoqin Xuan, Yamei Sun, Shubing Tang, Nan Yue, Zhikang Qian. J Virol 2019
6
33


Silencing of RNA helicase II/Gualpha inhibits mammalian ribosomal RNA production.
Dale Henning, Rolando B So, Runyan Jin, Lester F Lau, Benigno C Valdez. J Biol Chem 2003
57
22



The tale of RNA G-quadruplex.
Prachi Agarwala, Satyaprakash Pandey, Souvik Maiti. Org Biomol Chem 2015
85
22

A Survey of DDX21 Activity During Rev/RRE Complex Formation.
John A Hammond, Li Zhou, Rajan Lamichhane, Hui-Yi Chu, David P Millar, Larry Gerace, James R Williamson. J Mol Biol 2018
10
22

Structural basis for RNA-duplex recognition and unwinding by the DEAD-box helicase Mss116p.
Anna L Mallam, Mark Del Campo, Benjamin Gilman, David J Sidote, Alan M Lambowitz. Nature 2012
74
22

An RNA guanine quadruplex regulated pathway to TRAIL-sensitization by DDX21.
Ewan K S McRae, Steven J Dupas, Evan P Booy, Ramanaguru S Piragasam, Richard P Fahlman, Sean A McKenna. RNA 2020
6
33

DDX21 translocates from nucleus to cytoplasm and stimulates the innate immune response due to dengue virus infection.
Yangchao Dong, Wei Ye, Jing Yang, Peijun Han, Yuan Wang, Chuantao Ye, Daihui Weng, Fanglin Zhang, Zhikai Xu, Yingfeng Lei. Biochem Biophys Res Commun 2016
23
22

Cellular DDX21 RNA helicase inhibits influenza A virus replication but is counteracted by the viral NS1 protein.
Guifang Chen, Chien-Hung Liu, Ligang Zhou, Robert M Krug. Cell Host Microbe 2014
62
22

Insights into the RNA quadruplex binding specificity of DDX21.
Ewan K S McRae, David E Davidson, Steven J Dupas, Sean A McKenna. Biochim Biophys Acta Gen Subj 2018
6
33

Biochemical Differences and Similarities between the DEAD-Box Helicase Orthologs DDX3X and Ded1p.
Deepak Sharma, Andrea A Putnam, Eckhard Jankowsky. J Mol Biol 2017
18
22


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.