A citation-based method for searching scientific literature

Diana Matheoud, Tyler Cannon, Aurore Voisin, Anna-Maija Penttinen, Lauriane Ramet, Ahmed M Fahmy, Charles Ducrot, Annie Laplante, Marie-Josée Bourque, Lei Zhu, Romain Cayrol, Armelle Le Campion, Heidi M McBride, Samantha Gruenheid, Louis-Eric Trudeau, Michel Desjardins. Nature 2019
Times Cited: 163







List of co-cited articles
1562 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Parkinson's Disease-Related Proteins PINK1 and Parkin Repress Mitochondrial Antigen Presentation.
Diana Matheoud, Ayumu Sugiura, Angélique Bellemare-Pelletier, Annie Laplante, Christiane Rondeau, Magali Chemali, Ali Fazel, John J Bergeron, Louis-Eric Trudeau, Yan Burelle,[...]. Cell 2016
245
36

Parkin and PINK1 mitigate STING-induced inflammation.
Danielle A Sliter, Jennifer Martinez, Ling Hao, Xi Chen, Nuo Sun, Tara D Fischer, Jonathon L Burman, Yan Li, Zhe Zhang, Derek P Narendra,[...]. Nature 2018
420
31

Gut Microbiota Regulate Motor Deficits and Neuroinflammation in a Model of Parkinson's Disease.
Timothy R Sampson, Justine W Debelius, Taren Thron, Stefan Janssen, Gauri G Shastri, Zehra Esra Ilhan, Collin Challis, Catherine E Schretter, Sandra Rocha, Viviana Gradinaru,[...]. Cell 2016
30

Transneuronal Propagation of Pathologic α-Synuclein from the Gut to the Brain Models Parkinson's Disease.
Sangjune Kim, Seung-Hwan Kwon, Tae-In Kam, Nikhil Panicker, Senthilkumar S Karuppagounder, Saebom Lee, Jun Hee Lee, Wonjoong Richard Kim, Minjee Kook, Catherine A Foss,[...]. Neuron 2019
340
25

Vagotomy and subsequent risk of Parkinson's disease.
Elisabeth Svensson, Erzsébet Horváth-Puhó, Reimar W Thomsen, Jens Christian Djurhuus, Lars Pedersen, Per Borghammer, Henrik Toft Sørensen. Ann Neurol 2015
375
20

Basal Mitophagy Occurs Independently of PINK1 in Mouse Tissues of High Metabolic Demand.
Thomas G McWilliams, Alan R Prescott, Lambert Montava-Garriga, Graeme Ball, François Singh, Erica Barini, Miratul M K Muqit, Simon P Brooks, Ian G Ganley. Cell Metab 2018
243
19

The ubiquitin kinase PINK1 recruits autophagy receptors to induce mitophagy.
Michael Lazarou, Danielle A Sliter, Lesley A Kane, Shireen A Sarraf, Chunxin Wang, Jonathon L Burman, Dionisia P Sideris, Adam I Fogel, Richard J Youle. Nature 2015
18

Short chain fatty acids and gut microbiota differ between patients with Parkinson's disease and age-matched controls.
Marcus M Unger, Jörg Spiegel, Klaus-Ulrich Dillmann, David Grundmann, Hannah Philippeit, Jan Bürmann, Klaus Faßbender, Andreas Schwiertz, Karl-Herbert Schäfer. Parkinsonism Relat Disord 2016
401
17

Staging of brain pathology related to sporadic Parkinson's disease.
Heiko Braak, Kelly Del Tredici, Udo Rüb, Rob A I de Vos, Ernst N H Jansen Steur, Eva Braak. Neurobiol Aging 2003
17

Hereditary early-onset Parkinson's disease caused by mutations in PINK1.
Enza Maria Valente, Patrick M Abou-Sleiman, Viviana Caputo, Miratul M K Muqit, Kirsten Harvey, Suzana Gispert, Zeeshan Ali, Domenico Del Turco, Anna Rita Bentivoglio, Daniel G Healy,[...]. Science 2004
16

Colonic bacterial composition in Parkinson's disease.
Ali Keshavarzian, Stefan J Green, Phillip A Engen, Robin M Voigt, Ankur Naqib, Christopher B Forsyth, Ece Mutlu, Kathleen M Shannon. Mov Disord 2015
481
16

Parkin is recruited selectively to impaired mitochondria and promotes their autophagy.
Derek Narendra, Atsushi Tanaka, Der-Fen Suen, Richard J Youle. J Cell Biol 2008
15

Evidence for bidirectional and trans-synaptic parasympathetic and sympathetic propagation of alpha-synuclein in rats.
Nathalie Van Den Berge, Nelson Ferreira, Hjalte Gram, Trine Werenberg Mikkelsen, Aage Kristian Olsen Alstrup, Nicolas Casadei, Pai Tsung-Pin, Olaf Riess, Jens Randel Nyengaard, Gültekin Tamgüney,[...]. Acta Neuropathol 2019
106
15

T cells from patients with Parkinson's disease recognize α-synuclein peptides.
David Sulzer, Roy N Alcalay, Francesca Garretti, Lucien Cote, Ellen Kanter, Julian Agin-Liebes, Christopher Liong, Curtis McMurtrey, William H Hildebrand, Xiaobo Mao,[...]. Nature 2017
314
14

Parkin and PINK1 function in a vesicular trafficking pathway regulating mitochondrial quality control.
Gian-Luca McLelland, Vincent Soubannier, Carol X Chen, Heidi M McBride, Edward A Fon. EMBO J 2014
393
14

Gut microbiota are related to Parkinson's disease and clinical phenotype.
Filip Scheperjans, Velma Aho, Pedro A B Pereira, Kaisa Koskinen, Lars Paulin, Eero Pekkonen, Elena Haapaniemi, Seppo Kaakkola, Johanna Eerola-Rautio, Marjatta Pohja,[...]. Mov Disord 2015
769
14

The nasal and gut microbiome in Parkinson's disease and idiopathic rapid eye movement sleep behavior disorder.
Anna Heintz-Buschart, Urvashi Pandey, Tamara Wicke, Friederike Sixel-Döring, Annette Janzen, Elisabeth Sittig-Wiegand, Claudia Trenkwalder, Wolfgang H Oertel, Brit Mollenhauer, Paul Wilmes. Mov Disord 2018
185
14

PINK1 is selectively stabilized on impaired mitochondria to activate Parkin.
Derek P Narendra, Seok Min Jin, Atsushi Tanaka, Der-Fen Suen, Clement A Gautier, Jie Shen, Mark R Cookson, Richard J Youle. PLoS Biol 2010
14


Neuroprotective effects of fecal microbiota transplantation on MPTP-induced Parkinson's disease mice: Gut microbiota, glial reaction and TLR4/TNF-α signaling pathway.
Meng-Fei Sun, Ying-Li Zhu, Zhi-Lan Zhou, Xue-Bing Jia, Yi-Da Xu, Qin Yang, Chun Cui, Yan-Qin Shen. Brain Behav Immun 2018
168
14

Drosophila pink1 is required for mitochondrial function and interacts genetically with parkin.
Ira E Clark, Mark W Dodson, Changan Jiang, Joseph H Cao, Jun R Huh, Jae Hong Seol, Soon Ji Yoo, Bruce A Hay, Ming Guo. Nature 2006
13

Endogenous Parkin Preserves Dopaminergic Substantia Nigral Neurons following Mitochondrial DNA Mutagenic Stress.
Alicia M Pickrell, Chiu-Hui Huang, Scott R Kennedy, Alban Ordureau, Dionisia P Sideris, Jake G Hoekstra, J Wade Harper, Richard J Youle. Neuron 2015
196
13

Direct evidence of Parkinson pathology spread from the gastrointestinal tract to the brain in rats.
Staffan Holmqvist, Oldriska Chutna, Luc Bousset, Patrick Aldrin-Kirk, Wen Li, Tomas Björklund, Zhan-You Wang, Laurent Roybon, Ronald Melki, Jia-Yi Li. Acta Neuropathol 2014
437
13

Parkinson's disease and Parkinson's disease medications have distinct signatures of the gut microbiome.
Erin M Hill-Burns, Justine W Debelius, James T Morton, William T Wissemann, Matthew R Lewis, Zachary D Wallen, Shyamal D Peddada, Stewart A Factor, Eric Molho, Cyrus P Zabetian,[...]. Mov Disord 2017
313
13

Pathological α-synuclein transmission initiates Parkinson-like neurodegeneration in nontransgenic mice.
Kelvin C Luk, Victoria Kehm, Jenna Carroll, Bin Zhang, Patrick O'Brien, John Q Trojanowski, Virginia M-Y Lee. Science 2012
12

Mutations in the parkin gene cause autosomal recessive juvenile parkinsonism.
T Kitada, S Asakawa, N Hattori, H Matsumine, Y Yamamura, S Minoshima, M Yokochi, Y Mizuno, N Shimizu. Nature 1998
12

mito-QC illuminates mitophagy and mitochondrial architecture in vivo.
Thomas G McWilliams, Alan R Prescott, George F G Allen, Jevgenia Tamjar, Michael J Munson, Calum Thomson, Miratul M K Muqit, Ian G Ganley. J Cell Biol 2016
206
11

Ubiquitin is phosphorylated by PINK1 to activate parkin.
Fumika Koyano, Kei Okatsu, Hidetaka Kosako, Yasushi Tamura, Etsu Go, Mayumi Kimura, Yoko Kimura, Hikaru Tsuchiya, Hidehito Yoshihara, Takatsugu Hirokawa,[...]. Nature 2014
812
11

PINK1 and Parkin target Miro for phosphorylation and degradation to arrest mitochondrial motility.
Xinnan Wang, Dominic Winter, Ghazaleh Ashrafi, Julia Schlehe, Yao Liang Wong, Dennis Selkoe, Sarah Rice, Judith Steen, Matthew J LaVoie, Thomas L Schwarz. Cell 2011
746
11

Vagotomy and Parkinson disease: A Swedish register-based matched-cohort study.
Bojing Liu, Fang Fang, Nancy L Pedersen, Annika Tillander, Jonas F Ludvigsson, Anders Ekbom, Per Svenningsson, Honglei Chen, Karin Wirdefeldt. Neurology 2017
179
11

Basal mitophagy is widespread in Drosophila but minimally affected by loss of Pink1 or parkin.
Juliette J Lee, Alvaro Sanchez-Martinez, Aitor Martinez Zarate, Cristiane Benincá, Ugo Mayor, Michael J Clague, Alexander J Whitworth. J Cell Biol 2018
140
11

Parkinson's disease: a dual-hit hypothesis.
C H Hawkes, K Del Tredici, H Braak. Neuropathol Appl Neurobiol 2007
479
11

Gut bacterial tyrosine decarboxylases restrict levels of levodopa in the treatment of Parkinson's disease.
Sebastiaan P van Kessel, Alexandra K Frye, Ahmed O El-Gendy, Maria Castejon, Ali Keshavarzian, Gertjan van Dijk, Sahar El Aidy. Nat Commun 2019
125
11

Mitochondrial dysfunction in Drosophila PINK1 mutants is complemented by parkin.
Jeehye Park, Sung Bae Lee, Sungkyu Lee, Yongsung Kim, Saera Song, Sunhong Kim, Eunkyung Bae, Jaeseob Kim, Minho Shong, Jin-Man Kim,[...]. Nature 2006
11

Parkinson's disease.
Lorraine V Kalia, Anthony E Lang. Lancet 2015
11

PINK1 phosphorylates ubiquitin to activate Parkin E3 ubiquitin ligase activity.
Lesley A Kane, Michael Lazarou, Adam I Fogel, Yan Li, Koji Yamano, Shireen A Sarraf, Soojay Banerjee, Richard J Youle. J Cell Biol 2014
679
10

Quantitative proteomics reveal a feedforward mechanism for mitochondrial PARKIN translocation and ubiquitin chain synthesis.
Alban Ordureau, Shireen A Sarraf, David M Duda, Jin-Mi Heo, Mark P Jedrychowski, Vladislav O Sviderskiy, Jennifer L Olszewski, James T Koerber, Tiao Xie, Sean A Beausoleil,[...]. Mol Cell 2014
357
10

Alpha-synuclein in Lewy bodies.
M G Spillantini, M L Schmidt, V M Lee, J Q Trojanowski, R Jakes, M Goedert. Nature 1997
10

A vesicular transport pathway shuttles cargo from mitochondria to lysosomes.
Vincent Soubannier, Gian-Luca McLelland, Rodolfo Zunino, Emelie Braschi, Peter Rippstein, Edward A Fon, Heidi M McBride. Curr Biol 2012
380
10

Host microbiota constantly control maturation and function of microglia in the CNS.
Daniel Erny, Anna Lena Hrabě de Angelis, Diego Jaitin, Peter Wieghofer, Ori Staszewski, Eyal David, Hadas Keren-Shaul, Tanel Mahlakoiv, Kristin Jakobshagen, Thorsten Buch,[...]. Nat Neurosci 2015
10

Role of TLR4 in the gut-brain axis in Parkinson's disease: a translational study from men to mice.
Paula Perez-Pardo, Hemraj B Dodiya, Phillip A Engen, Christopher B Forsyth, Andrea M Huschens, Maliha Shaikh, Robin M Voigt, Ankur Naqib, Stefan J Green, Jeffrey H Kordower,[...]. Gut 2019
112
10

Altered gut microbiota and inflammatory cytokine responses in patients with Parkinson's disease.
Chin-Hsien Lin, Chieh-Chang Chen, Han-Lin Chiang, Jyh-Ming Liou, Chih-Min Chang, Tzu-Pin Lu, Eric Y Chuang, Yi-Cheng Tai, Chieh Cheng, Han-Yi Lin,[...]. J Neuroinflammation 2019
85
11

Functional implications of microbial and viral gut metagenome changes in early stage L-DOPA-naïve Parkinson's disease patients.
J R Bedarf, F Hildebrand, L P Coelho, S Sunagawa, M Bahram, F Goeser, P Bork, U Wüllner. Genome Med 2017
215
10


Triggers, Facilitators, and Aggravators: Redefining Parkinson's Disease Pathogenesis.
Michaela E Johnson, Benjamin Stecher, Viviane Labrie, Lena Brundin, Patrik Brundin. Trends Neurosci 2019
125
10

Alteration of the fecal microbiota in Chinese patients with Parkinson's disease.
Yiwei Qian, Xiaodong Yang, Shaoqing Xu, Chunyan Wu, Yanyan Song, Nan Qin, Sheng-Di Chen, Qin Xiao. Brain Behav Immun 2018
134
10

Building and decoding ubiquitin chains for mitophagy.
J Wade Harper, Alban Ordureau, Jin-Mi Heo. Nat Rev Mol Cell Biol 2018
229
9

The mitochondrial deubiquitinase USP30 opposes parkin-mediated mitophagy.
Baris Bingol, Joy S Tea, Lilian Phu, Mike Reichelt, Corey E Bakalarski, Qinghua Song, Oded Foreman, Donald S Kirkpatrick, Morgan Sheng. Nature 2014
430
9

PINK1 stabilized by mitochondrial depolarization recruits Parkin to damaged mitochondria and activates latent Parkin for mitophagy.
Noriyuki Matsuda, Shigeto Sato, Kahori Shiba, Kei Okatsu, Keiko Saisho, Clement A Gautier, Yu-Shin Sou, Shinji Saiki, Sumihiro Kawajiri, Fumiaki Sato,[...]. J Cell Biol 2010
9

Parkin is activated by PINK1-dependent phosphorylation of ubiquitin at Ser65.
Agne Kazlauskaite, Chandana Kondapalli, Robert Gourlay, David G Campbell, Maria Stella Ritorto, Kay Hofmann, Dario R Alessi, Axel Knebel, Matthias Trost, Miratul M K Muqit. Biochem J 2014
467
9


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.