A citation-based method for searching scientific literature

Marie E Jönsson, Per Ludvik Brattås, Charlotte Gustafsson, Rebecca Petri, David Yudovich, Karolina Pircs, Shana Verschuere, Sofia Madsen, Jenny Hansson, Jonas Larsson, Robert Månsson, Alexander Meissner, Johan Jakobsson. Nat Commun 2019
Times Cited: 26







List of co-cited articles
372 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Initial sequencing and analysis of the human genome.
E S Lander, L M Linton, B Birren, C Nusbaum, M C Zody, J Baldwin, K Devon, K Dewar, M Doyle, W FitzHugh,[...]. Nature 2001
53

A LINE1-Nucleolin Partnership Regulates Early Development and ESC Identity.
Michelle Percharde, Chih-Jen Lin, Yafei Yin, Juan Guan, Gabriel A Peixoto, Aydan Bulut-Karslioglu, Steffen Biechele, Bo Huang, Xiaohua Shen, Miguel Ramalho-Santos. Cell 2018
144
30

KAP1 controls endogenous retroviruses in embryonic stem cells.
Helen M Rowe, Johan Jakobsson, Daniel Mesnard, Jacques Rougemont, Séverine Reynard, Tugce Aktas, Pierre V Maillard, Hillary Layard-Liesching, Sonia Verp, Julien Marquis,[...]. Nature 2010
435
30

Somatic mosaicism in neuronal precursor cells mediated by L1 retrotransposition.
Alysson R Muotri, Vi T Chu, Maria C N Marchetto, Wei Deng, John V Moran, Fred H Gage. Nature 2005
590
26

Hominoid-Specific Transposable Elements and KZFPs Facilitate Human Embryonic Genome Activation and Control Transcription in Naive Human ESCs.
Julien Pontis, Evarist Planet, Sandra Offner, Priscilla Turelli, Julien Duc, Alexandre Coudray, Thorold W Theunissen, Rudolf Jaenisch, Didier Trono. Cell Stem Cell 2019
52
26

LINE-1 Evasion of Epigenetic Repression in Humans.
Francisco J Sanchez-Luque, Marie-Jeanne H C Kempen, Patricia Gerdes, Dulce B Vargas-Landin, Sandra R Richardson, Robin-Lee Troskie, J Samuel Jesuadian, Seth W Cheetham, Patricia E Carreira, Carmen Salvador-Palomeque,[...]. Mol Cell 2019
40
26

The HUSH complex cooperates with TRIM28 to repress young retrotransposons and new genes.
Luisa Robbez-Masson, Christopher H C Tie, Lucia Conde, Hale Tunbak, Connor Husovsky, Iva A Tchasovnikarova, Richard T Timms, Javier Herrero, Paul J Lehner, Helen M Rowe. Genome Res 2018
48
26


Regulatory evolution of innate immunity through co-option of endogenous retroviruses.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Science 2016
344
26

Repetitive elements may comprise over two-thirds of the human genome.
A P Jason de Koning, Wanjun Gu, Todd A Castoe, Mark A Batzer, David D Pollock. PLoS Genet 2011
577
26

Hot L1s account for the bulk of retrotransposition in the human population.
Brook Brouha, Joshua Schustak, Richard M Badge, Sheila Lutz-Prigge, Alexander H Farley, John V Moran, Haig H Kazazian. Proc Natl Acad Sci U S A 2003
640
26

L1 drives IFN in senescent cells and promotes age-associated inflammation.
Marco De Cecco, Takahiro Ito, Anna P Petrashen, Amy E Elias, Nicholas J Skvir, Steven W Criscione, Alberto Caligiana, Greta Brocculi, Emily M Adney, Jef D Boeke,[...]. Nature 2019
234
26

Diseases of the nERVous system: retrotransposon activity in neurodegenerative disease.
Oliver H Tam, Lyle W Ostrow, Molly Gale Hammell. Mob DNA 2019
34
26

An evolutionary arms race between KRAB zinc-finger genes ZNF91/93 and SVA/L1 retrotransposons.
Frank M J Jacobs, David Greenberg, Ngan Nguyen, Maximilian Haeussler, Adam D Ewing, Sol Katzman, Benedict Paten, Sofie R Salama, David Haussler. Nature 2014
225
26

LINE-mediated retrotransposition of marked Alu sequences.
Marie Dewannieux, Cécile Esnault, Thierry Heidmann. Nat Genet 2003
672
23

Endogenous retroviruses function as species-specific enhancer elements in the placenta.
Edward B Chuong, M A Karim Rumi, Michael J Soares, Julie C Baker. Nat Genet 2013
191
23

Roles for retrotransposon insertions in human disease.
Dustin C Hancks, Haig H Kazazian. Mob DNA 2016
254
23

Embryonic stem cell potency fluctuates with endogenous retrovirus activity.
Todd S Macfarlan, Wesley D Gifford, Shawn Driscoll, Karen Lettieri, Helen M Rowe, Dario Bonanomi, Amy Firth, Oded Singer, Didier Trono, Samuel L Pfaff. Nature 2012
524
23

Retrotransposons regulate host genes in mouse oocytes and preimplantation embryos.
Anne E Peaston, Alexei V Evsikov, Joel H Graber, Wilhelmine N de Vries, Andrea E Holbrook, Davor Solter, Barbara B Knowles. Dev Cell 2004
402
23

TRIM28 represses transcription of endogenous retroviruses in neural progenitor cells.
Liana Fasching, Adamandia Kapopoulou, Rohit Sachdeva, Rebecca Petri, Marie E Jönsson, Christian Männe, Priscilla Turelli, Patric Jern, Florence Cammas, Didier Trono,[...]. Cell Rep 2015
71
23

Widespread contribution of transposable elements to the innovation of gene regulatory networks.
Vasavi Sundaram, Yong Cheng, Zhihai Ma, Daofeng Li, Xiaoyun Xing, Peter Edge, Michael P Snyder, Ting Wang. Genome Res 2014
187
23

Regulatory activities of transposable elements: from conflicts to benefits.
Edward B Chuong, Nels C Elde, Cédric Feschotte. Nat Rev Genet 2017
439
23

Ten things you should know about transposable elements.
Guillaume Bourque, Kathleen H Burns, Mary Gehring, Vera Gorbunova, Andrei Seluanov, Molly Hammell, Michaël Imbeault, Zsuzsanna Izsvák, Henry L Levin, Todd S Macfarlan,[...]. Genome Biol 2018
193
23

KRAB zinc-finger proteins contribute to the evolution of gene regulatory networks.
Michaël Imbeault, Pierre-Yves Helleboid, Didier Trono. Nature 2017
175
23

L1 retrotransposition in human neural progenitor cells.
Nicole G Coufal, José L Garcia-Perez, Grace E Peng, Gene W Yeo, Yangling Mu, Michael T Lovci, Maria Morell, K Sue O'Shea, John V Moran, Fred H Gage. Nature 2009
519
19

Intrinsic retroviral reactivation in human preimplantation embryos and pluripotent cells.
Edward J Grow, Ryan A Flynn, Shawn L Chavez, Nicholas L Bayless, Mark Wossidlo, Daniel J Wesche, Lance Martin, Carol B Ware, Catherine A Blish, Howard Y Chang,[...]. Nature 2015
262
19

LINE-1 activation after fertilization regulates global chromatin accessibility in the early mouse embryo.
Joanna W Jachowicz, Xinyang Bing, Julien Pontabry, Ana Bošković, Oliver J Rando, Maria-Elena Torres-Padilla. Nat Genet 2017
101
19

Cytosine methylation and the ecology of intragenomic parasites.
J A Yoder, C P Walsh, T H Bestor. Trends Genet 1997
19

Transposable elements drive widespread expression of oncogenes in human cancers.
Hyo Sik Jang, Nakul M Shah, Alan Y Du, Zea Z Dailey, Erica C Pehrsson, Paula M Godoy, David Zhang, Daofeng Li, Xiaoyun Xing, Sungsu Kim,[...]. Nat Genet 2019
64
19


A piRNA pathway primed by individual transposons is linked to de novo DNA methylation in mice.
Alexei A Aravin, Ravi Sachidanandam, Deborah Bourc'his, Christopher Schaefer, Dubravka Pezic, Katalin Fejes Toth, Timothy Bestor, Gregory J Hannon. Mol Cell 2008
708
19

Functional evaluation of transposable elements as enhancers in mouse embryonic and trophoblast stem cells.
Christopher D Todd, Özgen Deniz, Darren Taylor, Miguel R Branco. Elife 2019
35
19

Conserved roles of mouse DUX and human DUX4 in activating cleavage-stage genes and MERVL/HERVL retrotransposons.
Peter G Hendrickson, Jessie A Doráis, Edward J Grow, Jennifer L Whiddon, Jong-Won Lim, Candice L Wike, Bradley D Weaver, Christian Pflueger, Benjamin R Emery, Aaron L Wilcox,[...]. Nat Genet 2017
222
19

Evolutionally dynamic L1 regulation in embryonic stem cells.
Nathaly Castro-Diaz, Gabriela Ecco, Andrea Coluccio, Adamandia Kapopoulou, Benyamin Yazdanpanah, Marc Friedli, Julien Duc, Suk Min Jang, Priscilla Turelli, Didier Trono. Genes Dev 2014
120
19

Transposable elements have rewired the core regulatory network of human embryonic stem cells.
Galih Kunarso, Na-Yu Chia, Justin Jeyakani, Catalina Hwang, Xinyi Lu, Yun-Shen Chan, Huck-Hui Ng, Guillaume Bourque. Nat Genet 2010
456
19

Transposon-mediated rewiring of gene regulatory networks contributed to the evolution of pregnancy in mammals.
Vincent J Lynch, Robert D Leclerc, Gemma May, Günter P Wagner. Nat Genet 2011
232
19

Selective silencing of euchromatic L1s revealed by genome-wide screens for L1 regulators.
Nian Liu, Cameron H Lee, Tomek Swigut, Edward Grow, Bo Gu, Michael C Bassik, Joanna Wysocka. Nature 2018
101
19

The regulated retrotransposon transcriptome of mammalian cells.
Geoffrey J Faulkner, Yasumasa Kimura, Carsten O Daub, Shivangi Wani, Charles Plessy, Katharine M Irvine, Kate Schroder, Nicole Cloonan, Anita L Steptoe, Timo Lassmann,[...]. Nat Genet 2009
507
19

Endogenous retroviral promoter exaptation in human cancer.
Artem Babaian, Dixie L Mager. Mob DNA 2016
72
19

High frequency retrotransposition in cultured mammalian cells.
J V Moran, S E Holmes, T P Naas, R J DeBerardinis, J D Boeke, H H Kazazian. Cell 1996
727
19

Somatic retrotransposition alters the genetic landscape of the human brain.
J Kenneth Baillie, Mark W Barnett, Kyle R Upton, Daniel J Gerhardt, Todd A Richmond, Fioravante De Sapio, Paul M Brennan, Patrizia Rizzu, Sarah Smith, Mark Fell,[...]. Nature 2011
432
19

The impact of retrotransposons on human genome evolution.
Richard Cordaux, Mark A Batzer. Nat Rev Genet 2009
921
19

Tau Activates Transposable Elements in Alzheimer's Disease.
Caiwei Guo, Hyun-Hwan Jeong, Yi-Chen Hsieh, Hans-Ulrich Klein, David A Bennett, Philip L De Jager, Zhandong Liu, Joshua M Shulman. Cell Rep 2018
73
19

Cell lineage analysis in human brain using endogenous retroelements.
Gilad D Evrony, Eunjung Lee, Bhaven K Mehta, Yuval Benjamini, Robert M Johnson, Xuyu Cai, Lixing Yang, Psalm Haseley, Hillel S Lehmann, Peter J Park,[...]. Neuron 2015
135
19

Ataxia telangiectasia mutated (ATM) modulates long interspersed element-1 (L1) retrotransposition in human neural stem cells.
Nicole G Coufal, Josè Luis Garcia-Perez, Grace E Peng, Maria C N Marchetto, Alysson R Muotri, Yangling Mu, Christian T Carson, Angela Macia, John V Moran, Fred H Gage. Proc Natl Acad Sci U S A 2011
138
19

Transposable Elements, Inflammation, and Neurological Disease.
Aurian Saleh, Angela Macia, Alysson R Muotri. Front Neurol 2019
35
19

Ubiquitous L1 mosaicism in hippocampal neurons.
Kyle R Upton, Daniel J Gerhardt, J Samuel Jesuadian, Sandra R Richardson, Francisco J Sánchez-Luque, Gabriela O Bodea, Adam D Ewing, Carmen Salvador-Palomeque, Marjo S van der Knaap, Paul M Brennan,[...]. Cell 2015
178
19

Transposable elements in cancer.
Kathleen H Burns. Nat Rev Cancer 2017
160
19


L1 retrotransposition in neurons is modulated by MeCP2.
Alysson R Muotri, Maria C N Marchetto, Nicole G Coufal, Ruth Oefner, Gene Yeo, Kinichi Nakashima, Fred H Gage. Nature 2010
399
19


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.