A citation-based method for searching scientific literature

Chirantani Mukherjee, Vivek Tripathi, Eleni Maria Manolika, Anne Margriet Heijink, Giulia Ricci, Sarra Merzouk, H Rudolf de Boer, Jeroen Demmers, Marcel A T M van Vugt, Arnab Ray Chaudhuri. Nat Commun 2019
Times Cited: 44







List of co-cited articles
735 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Human RIF1-Protein Phosphatase 1 Prevents Degradation and Breakage of Nascent DNA on Replication Stalling.
Javier Garzón, Sebastian Ursich, Massimo Lopes, Shin-Ichiro Hiraga, Anne D Donaldson. Cell Rep 2019
34
70

Double-strand break repair-independent role for BRCA2 in blocking stalled replication fork degradation by MRE11.
Katharina Schlacher, Nicole Christ, Nicolas Siaud, Akinori Egashira, Hong Wu, Maria Jasin. Cell 2011
754
45

Rad51-mediated replication fork reversal is a global response to genotoxic treatments in human cells.
Ralph Zellweger, Damian Dalcher, Karun Mutreja, Matteo Berti, Jonas A Schmid, Raquel Herrador, Alessandro Vindigni, Massimo Lopes. J Cell Biol 2015
370
40


Replication fork stability confers chemoresistance in BRCA-deficient cells.
Arnab Ray Chaudhuri, Elsa Callen, Xia Ding, Ewa Gogola, Alexandra A Duarte, Ji-Eun Lee, Nancy Wong, Vanessa Lafarga, Jennifer A Calvo, Nicholas J Panzarino,[...]. Nature 2016
439
40

Replication fork reversal triggers fork degradation in BRCA2-defective cells.
Sofija Mijic, Ralph Zellweger, Nagaraja Chappidi, Matteo Berti, Kurt Jacobs, Karun Mutreja, Sebastian Ursich, Arnab Ray Chaudhuri, Andre Nussenzweig, Pavel Janscak,[...]. Nat Commun 2017
169
38

MRE11 and EXO1 nucleases degrade reversed forks and elicit MUS81-dependent fork rescue in BRCA2-deficient cells.
Delphine Lemaçon, Jessica Jackson, Annabel Quinet, Joshua R Brickner, Shan Li, Stephanie Yazinski, Zhongsheng You, Grzegorz Ira, Lee Zou, Nima Mosammaparast,[...]. Nat Commun 2017
180
38

DNA2 drives processing and restart of reversed replication forks in human cells.
Saravanabhavan Thangavel, Matteo Berti, Maryna Levikova, Cosimo Pinto, Shivasankari Gomathinayagam, Marko Vujanovic, Ralph Zellweger, Hayley Moore, Eu Han Lee, Eric A Hendrickson,[...]. J Cell Biol 2015
205
34

Restoration of Replication Fork Stability in BRCA1- and BRCA2-Deficient Cells by Inactivation of SNF2-Family Fork Remodelers.
Angelo Taglialatela, Silvia Alvarez, Giuseppe Leuzzi, Vincenzo Sannino, Lepakshi Ranjha, Jen-Wei Huang, Chioma Madubata, Roopesh Anand, Brynn Levy, Raul Rabadan,[...]. Mol Cell 2017
169
34

Replication fork reversal in eukaryotes: from dead end to dynamic response.
Kai J Neelsen, Massimo Lopes. Nat Rev Mol Cell Biol 2015
278
31

Smarcal1-Mediated Fork Reversal Triggers Mre11-Dependent Degradation of Nascent DNA in the Absence of Brca2 and Stable Rad51 Nucleofilaments.
Arun Mouli Kolinjivadi, Vincenzo Sannino, Anna De Antoni, Karina Zadorozhny, Mairi Kilkenny, Hervé Técher, Giorgio Baldi, Rong Shen, Alberto Ciccia, Luca Pellegrini,[...]. Mol Cell 2017
172
27

Causes and consequences of replication stress.
Michelle K Zeman, Karlene A Cimprich. Nat Cell Biol 2014
27

A cell cycle-dependent regulatory circuit composed of 53BP1-RIF1 and BRCA1-CtIP controls DNA repair pathway choice.
Cristina Escribano-Díaz, Alexandre Orthwein, Amélie Fradet-Turcotte, Mengtan Xing, Jordan T F Young, Ján Tkáč, Michael A Cook, Adam P Rosebrock, Meagan Munro, Marella D Canny,[...]. Mol Cell 2013
572
27

Abro1 maintains genome stability and limits replication stress by protecting replication fork stability.
Shengfeng Xu, Xiao Wu, Ling Wu, Andy Castillo, Jianxin Liu, Erin Atkinson, Atanu Paul, Dan Su, Katharina Schlacher, Yoshihiro Komatsu,[...]. Genes Dev 2017
34
29

BOD1L Is Required to Suppress Deleterious Resection of Stressed Replication Forks.
Martin R Higgs, John J Reynolds, Alicja Winczura, Andrew N Blackford, Valérie Borel, Edward S Miller, Anastasia Zlatanou, Jadwiga Nieminuszczy, Ellis L Ryan, Nicholas J Davies,[...]. Mol Cell 2015
104
22

Mouse Rif1 is a key regulator of the replication-timing programme in mammalian cells.
Daniela Cornacchia, Vishnu Dileep, Jean-Pierre Quivy, Rossana Foti, Federico Tili, Rachel Santarella-Mellwig, Claude Antony, Geneviève Almouzni, David M Gilbert, Sara B C Buonomo. EMBO J 2012
159
22

Topoisomerase I poisoning results in PARP-mediated replication fork reversal.
Arnab Ray Chaudhuri, Yoshitami Hashimoto, Raquel Herrador, Kai J Neelsen, Daniele Fachinetti, Rodrigo Bermejo, Andrea Cocito, Vincenzo Costanzo, Massimo Lopes. Nat Struct Mol Biol 2012
309
22

Rad51 protects nascent DNA from Mre11-dependent degradation and promotes continuous DNA synthesis.
Yoshitami Hashimoto, Arnab Ray Chaudhuri, Massimo Lopes, Vincenzo Costanzo. Nat Struct Mol Biol 2010
338
22

PRIMPOL-Mediated Adaptive Response Suppresses Replication Fork Reversal in BRCA-Deficient Cells.
Annabel Quinet, Stephanie Tirman, Jessica Jackson, Saša Šviković, Delphine Lemaçon, Denisse Carvajal-Maldonado, Daniel González-Acosta, Alexandre T Vessoni, Emily Cybulla, Matthew Wood,[...]. Mol Cell 2020
67
22

CtIP-Mediated Fork Protection Synergizes with BRCA1 to Suppress Genomic Instability upon DNA Replication Stress.
Sara Przetocka, Antonio Porro, Hella A Bolck, Christina Walker, Aleksandra Lezaja, Anika Trenner, Christine von Aesch, Sarah-Felicitas Himmels, Alan D D'Andrea, Raphael Ceccaldi,[...]. Mol Cell 2018
57
22

Histone Methylation by SETD1A Protects Nascent DNA through the Nucleosome Chaperone Activity of FANCD2.
Martin R Higgs, Koichi Sato, John J Reynolds, Shabana Begum, Rachel Bayley, Amalia Goula, Audrey Vernet, Karissa L Paquin, David G Skalnik, Wataru Kobayashi,[...]. Mol Cell 2018
50
20

Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy.
Hannah Farmer, Nuala McCabe, Christopher J Lord, Andrew N J Tutt, Damian A Johnson, Tobias B Richardson, Manuela Santarosa, Krystyna J Dillon, Ian Hickson, Charlotte Knights,[...]. Nature 2005
20


Protein phosphatase 1 recruitment by Rif1 regulates DNA replication origin firing by counteracting DDK activity.
Anoushka Davé, Carol Cooley, Mansi Garg, Alessandro Bianchi. Cell Rep 2014
107
20

Replication Fork Reversal: Players and Guardians.
Annabel Quinet, Delphine Lemaçon, Alessandro Vindigni. Mol Cell 2017
127
20

ATR prohibits replication catastrophe by preventing global exhaustion of RPA.
Luis Ignacio Toledo, Matthias Altmeyer, Maj-Britt Rask, Claudia Lukas, Dorthe Helena Larsen, Lou Klitgaard Povlsen, Simon Bekker-Jensen, Niels Mailand, Jiri Bartek, Jiri Lukas. Cell 2013
490
20

Replication Fork Slowing and Reversal upon DNA Damage Require PCNA Polyubiquitination and ZRANB3 DNA Translocase Activity.
Marko Vujanovic, Jana Krietsch, Maria Chiara Raso, Nastassja Terraneo, Ralph Zellweger, Jonas A Schmid, Angelo Taglialatela, Jen-Wei Huang, Cory L Holland, Katharina Zwicky,[...]. Mol Cell 2017
119
20

RPA and RAD51: fork reversal, fork protection, and genome stability.
Kamakoti P Bhat, David Cortez. Nat Struct Mol Biol 2018
143
20

Rif1 prevents resection of DNA breaks and promotes immunoglobulin class switching.
Michela Di Virgilio, Elsa Callen, Arito Yamane, Wenzhu Zhang, Mila Jankovic, Alexander D Gitlin, Niklas Feldhahn, Wolfgang Resch, Thiago Y Oliveira, Brian T Chait,[...]. Science 2013
287
20

RIF1 is essential for 53BP1-dependent nonhomologous end joining and suppression of DNA double-strand break resection.
J Ross Chapman, Patricia Barral, Jean-Baptiste Vannier, Valérie Borel, Martin Steger, Antonia Tomas-Loba, Alessandro A Sartori, Ian R Adams, Facundo D Batista, Simon J Boulton. Mol Cell 2013
409
20

RADX Modulates RAD51 Activity to Control Replication Fork Protection.
Kamakoti P Bhat, Archana Krishnamoorthy, Huzefa Dungrawala, Edwige B Garcin, Mauro Modesti, David Cortez. Cell Rep 2018
49
20

REV7 counteracts DNA double-strand break resection and affects PARP inhibition.
Guotai Xu, J Ross Chapman, Inger Brandsma, Jingsong Yuan, Martin Mistrik, Peter Bouwman, Jirina Bartkova, Ewa Gogola, Daniël Warmerdam, Marco Barazas,[...]. Nature 2015
358
20

53BP1 inhibits homologous recombination in Brca1-deficient cells by blocking resection of DNA breaks.
Samuel F Bunting, Elsa Callén, Nancy Wong, Hua-Tang Chen, Federica Polato, Amanda Gunn, Anne Bothmer, Niklas Feldhahn, Oscar Fernandez-Capetillo, Liu Cao,[...]. Cell 2010
20

Substrate-selective repair and restart of replication forks by DNA translocases.
Rémy Bétous, Frank B Couch, Aaron C Mason, Brandt F Eichman, Maria Manosas, David Cortez. Cell Rep 2013
108
18

Specific killing of BRCA2-deficient tumours with inhibitors of poly(ADP-ribose) polymerase.
Helen E Bryant, Niklas Schultz, Huw D Thomas, Kayan M Parker, Dan Flower, Elena Lopez, Suzanne Kyle, Mark Meuth, Nicola J Curtin, Thomas Helleday. Nature 2005
18

Rif1 controls DNA replication timing in yeast through the PP1 phosphatase Glc7.
Stefano Mattarocci, Maksym Shyian, Laure Lemmens, Pascal Damay, Dogus Murat Altintas, Tianlai Shi, Clinton R Bartholomew, Nicolas H Thomä, Christopher F J Hardy, David Shore. Cell Rep 2014
103
18

Nuclear Architecture Organized by Rif1 Underpins the Replication-Timing Program.
Rossana Foti, Stefano Gnan, Daniela Cornacchia, Vishnu Dileep, Aydan Bulut-Karslioglu, Sarah Diehl, Andreas Buness, Felix A Klein, Wolfgang Huber, Ewan Johnstone,[...]. Mol Cell 2016
101
18

Rif1 controls DNA replication by directing Protein Phosphatase 1 to reverse Cdc7-mediated phosphorylation of the MCM complex.
Shin-Ichiro Hiraga, Gina M Alvino, Fujung Chang, Hui-Yong Lian, Akila Sridhar, Takashi Kubota, Bonita J Brewer, Michael Weinreich, M K Raghuraman, Anne D Donaldson. Genes Dev 2014
140
18


ATR phosphorylates SMARCAL1 to prevent replication fork collapse.
Frank B Couch, Carol E Bansbach, Robert Driscoll, Jessica W Luzwick, Gloria G Glick, Rémy Bétous, Clinton M Carroll, Sung Yun Jung, Jun Qin, Karlene A Cimprich,[...]. Genes Dev 2013
246
18

The Replication Checkpoint Prevents Two Types of Fork Collapse without Regulating Replisome Stability.
Huzefa Dungrawala, Kristie L Rose, Kamakoti P Bhat, Kareem N Mohni, Gloria G Glick, Frank B Couch, David Cortez. Mol Cell 2015
210
18

Synthetic viability by BRCA2 and PARP1/ARTD1 deficiencies.
Xia Ding, Arnab Ray Chaudhuri, Elsa Callen, Yan Pang, Kajal Biswas, Kimberly D Klarmann, Betty K Martin, Sandra Burkett, Linda Cleveland, Stacey Stauffer,[...]. Nat Commun 2016
88
18

Polyubiquitinated PCNA recruits the ZRANB3 translocase to maintain genomic integrity after replication stress.
Alberto Ciccia, Amitabh V Nimonkar, Yiduo Hu, Ildiko Hajdu, Yathish Jagadheesh Achar, Lior Izhar, Sarah A Petit, Britt Adamson, John C Yoon, Stephen C Kowalczykowski,[...]. Mol Cell 2012
187
18

RADX Promotes Genome Stability and Modulates Chemosensitivity by Regulating RAD51 at Replication Forks.
Huzefa Dungrawala, Kamakoti P Bhat, Rémy Le Meur, Walter J Chazin, Xia Ding, Shyam K Sharan, Sarah R Wessel, Aditya A Sathe, Runxiang Zhao, David Cortez. Mol Cell 2017
91
18

Human RECQ1 promotes restart of replication forks reversed by DNA topoisomerase I inhibition.
Matteo Berti, Arnab Ray Chaudhuri, Saravanabhavan Thangavel, Shivasankari Gomathinayagam, Sasa Kenig, Marko Vujanovic, Federico Odreman, Timo Glatter, Simona Graziano, Ramiro Mendoza-Maldonado,[...]. Nat Struct Mol Biol 2013
261
18

The shieldin complex mediates 53BP1-dependent DNA repair.
Sylvie M Noordermeer, Salomé Adam, Dheva Setiaputra, Marco Barazas, Stephen J Pettitt, Alexanda K Ling, Michele Olivieri, Alejandro Álvarez-Quilón, Nathalie Moatti, Michal Zimmermann,[...]. Nature 2018
257
18

Rif1 regulates the replication timing domains on the human genome.
Satoshi Yamazaki, Aii Ishii, Yutaka Kanoh, Masako Oda, Yasumasa Nishito, Hisao Masai. EMBO J 2012
161
15

Replication-Coupled DNA Repair.
David Cortez. Mol Cell 2019
91
15


RAD52 Facilitates Mitotic DNA Synthesis Following Replication Stress.
Rahul Bhowmick, Sheroy Minocherhomji, Ian D Hickson. Mol Cell 2016
196
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.