A citation-based method for searching scientific literature


List of co-cited articles
50 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


G-quadruplex structures mark human regulatory chromatin.
Robert Hänsel-Hertsch, Dario Beraldi, Stefanie V Lensing, Giovanni Marsico, Katherine Zyner, Aled Parry, Marco Di Antonio, Jeremy Pike, Hiroshi Kimura, Masashi Narita,[...]. Nat Genet 2016
353
61

DNA G-quadruplex structures mold the DNA methylome.
Shi-Qing Mao, Avazeh T Ghanbarian, Jochen Spiegel, Sergio Martínez Cuesta, Dario Beraldi, Marco Di Antonio, Giovanni Marsico, Robert Hänsel-Hertsch, David Tannahill, Shankar Balasubramanian. Nat Struct Mol Biol 2018
77
46

Non-duplex G-Quadruplex Structures Emerge as Mediators of Epigenetic Modifications.
Ananda Kishore Mukherjee, Shalu Sharma, Shantanu Chowdhury. Trends Genet 2019
37
30

Direct evidence of mitochondrial G-quadruplex DNA by using fluorescent anti-cancer agents.
Wei-Chun Huang, Ting-Yuan Tseng, Ying-Ting Chen, Cheng-Chung Chang, Zi-Fu Wang, Chiung-Lin Wang, Tsu-Ning Hsu, Pei-Tzu Li, Chin-Tin Chen, Jing-Jer Lin,[...]. Nucleic Acids Res 2015
62
23

G-quadruplex unwinding helicases and their function in vivo.
Markus Sauer, Katrin Paeschke. Biochem Soc Trans 2017
83
23

G-quadruplex dynamics contribute to regulation of mitochondrial gene expression.
M Falabella, J E Kolesar, C Wallace, D de Jesus, L Sun, Y V Taguchi, C Wang, T Wang, I M Xiang, J K Alder,[...]. Sci Rep 2019
29
23

Quadruplex DNA: sequence, topology and structure.
Sarah Burge, Gary N Parkinson, Pascale Hazel, Alan K Todd, Stephen Neidle. Nucleic Acids Res 2006
23


Direct evidence for a G-quadruplex in a promoter region and its targeting with a small molecule to repress c-MYC transcription.
Adam Siddiqui-Jain, Cory L Grand, David J Bearss, Laurence H Hurley. Proc Natl Acad Sci U S A 2002
23


G-quadruplexes in promoters throughout the human genome.
Julian L Huppert, Shankar Balasubramanian. Nucleic Acids Res 2007
820
23


Mechanism of Transcription Anti-termination in Human Mitochondria.
Hauke S Hillen, Andrey V Parshin, Karen Agaronyan, Yaroslav I Morozov, James J Graber, Aleksandar Chernev, Kathrin Schwinghammer, Henning Urlaub, Michael Anikin, Patrick Cramer,[...]. Cell 2017
38
15

The mitochondrial transcription factor TFAM coordinates the assembly of multiple DNA molecules into nucleoid-like structures.
Brett A Kaufman, Nela Durisic, Jeffrey M Mativetsky, Santiago Costantino, Mark A Hancock, Peter Grutter, Eric A Shoubridge. Mol Biol Cell 2007
261
15

Cross-strand binding of TFAM to a single mtDNA molecule forms the mitochondrial nucleoid.
Christian Kukat, Karen M Davies, Christian A Wurm, Henrik Spåhr, Nina A Bonekamp, Inge Kühl, Friederike Joos, Paola Loguercio Polosa, Chan Bae Park, Viktor Posse,[...]. Proc Natl Acad Sci U S A 2015
168
15

Distinct structural features of TFAM drive mitochondrial DNA packaging versus transcriptional activation.
Huu B Ngo, Geoffrey A Lovely, Rob Phillips, David C Chan. Nat Commun 2014
115
15

G-quadruplexes and their regulatory roles in biology.
Daniela Rhodes, Hans J Lipps. Nucleic Acids Res 2015
707
15



MOF Acetyl Transferase Regulates Transcription and Respiration in Mitochondria.
Aindrila Chatterjee, Janine Seyfferth, Jacopo Lucci, Ralf Gilsbach, Sebastian Preissl, Lena Böttinger, Christoph U Mårtensson, Amol Panhale, Thomas Stehle, Oliver Kretz,[...]. Cell 2016
71
15

Direct regulation of complex I by mitochondrial MEF2D is disrupted in a mouse model of Parkinson disease and in human patients.
Hua She, Qian Yang, Kennie Shepherd, Yoland Smith, Gary Miller, Claudia Testa, Zixu Mao. J Clin Invest 2011
116
15

Mitochondrial Nucleoid: Shield and Switch of the Mitochondrial Genome.
Sung Ryul Lee, Jin Han. Oxid Med Cell Longev 2017
53
15

mtDNA Chromatin-like Organization Is Gradually Established during Mammalian Embryogenesis.
Shani Marom, Amit Blumberg, Anshul Kundaje, Dan Mishmar. iScience 2019
7
28

Superresolution fluorescence imaging of mitochondrial nucleoids reveals their spatial range, limits, and membrane interaction.
Timothy A Brown, Ariana N Tkachuk, Gleb Shtengel, Benjamin G Kopek, Daniel F Bogenhagen, Harald F Hess, David A Clayton. Mol Cell Biol 2011
159
15

Transcription factors bind negatively selected sites within human mtDNA genes.
Amit Blumberg, Badi Sri Sailaja, Anshul Kundaje, Liron Levin, Sara Dadon, Shimrit Shmorak, Eitan Shaulian, Eran Meshorer, Dan Mishmar. Genome Biol Evol 2014
29
15

G-quadruplex-mediated reduction of a pathogenic mitochondrial heteroplasmy.
Mansur M Naeem, Rathena Maheshan, Sheila R Costford, Azizia Wahedi, Marko Trajkovski, Janez Plavec, Liliya A Yatsunyk, Grzegorz L Ciesielski, Brett A Kaufman, Neal Sondheimer. Hum Mol Genet 2019
10
20

Acetylation and phosphorylation of human TFAM regulate TFAM-DNA interactions via contrasting mechanisms.
Graeme A King, Maryam Hashemi Shabestari, Kees-Karel H Taris, Ashutosh K Pandey, Sundararajan Venkatesh, Jayapalraja Thilagavathi, Kamalendra Singh, Rama Krishna Koppisetti, Dmitry Temiakov, Wouter H Roos,[...]. Nucleic Acids Res 2018
29
15

Identification and characterization of nucleolin as a c-myc G-quadruplex-binding protein.
Verónica González, Kexiao Guo, Laurence Hurley, Daekyu Sun. J Biol Chem 2009
194
15

FACT is a sensor of DNA torsional stress in eukaryotic cells.
Alfiya Safina, Peter Cheney, Mahadeb Pal, Leonid Brodsky, Alexander Ivanov, Kirill Kirsanov, Ekaterina Lesovaya, Denis Naberezhnov, Elimelech Nesher, Igor Koman,[...]. Nucleic Acids Res 2017
50
15

The expanding repertoire of G4 DNA structures.
Anna Varizhuk, Dmitry Ischenko, Vladimir Tsvetkov, Roman Novikov, Nikolay Kulemin, Dmitry Kaluzhny, Maria Vlasenok, Vladimir Naumov, Igor Smirnov, Galina Pozmogova. Biochimie 2017
40
15

ATR-X syndrome protein targets tandem repeats and influences allele-specific expression in a size-dependent manner.
Martin J Law, Karen M Lower, Hsiao P J Voon, Jim R Hughes, David Garrick, Vip Viprakasit, Matthew Mitson, Marco De Gobbi, Marco Marra, Andrew Morris,[...]. Cell 2010
265
15

HexServer: an FFT-based protein docking server powered by graphics processors.
Gary Macindoe, Lazaros Mavridis, Vishwesh Venkatraman, Marie-Dominique Devignes, David W Ritchie. Nucleic Acids Res 2010
317
15

G-Quadruplexes: Prediction, Characterization, and Biological Application.
Chun Kit Kwok, Catherine J Merrick. Trends Biotechnol 2017
143
15

Data set on G4 DNA interactions with human proteins.
M Vlasenok, O Levchenko, D Basmanov, D Klinov, A Varizhuk, G Pozmogova. Data Brief 2018
7
28

Whole genome experimental maps of DNA G-quadruplexes in multiple species.
Giovanni Marsico, Vicki S Chambers, Aleksandr B Sahakyan, Patrick McCauley, Jonathan M Boutell, Marco Di Antonio, Shankar Balasubramanian. Nucleic Acids Res 2019
107
15


Dynamic DNA methylation: In the right place at the right time.
Chongyuan Luo, Petra Hajkova, Joseph R Ecker. Science 2018
185
15

FIMO: scanning for occurrences of a given motif.
Charles E Grant, Timothy L Bailey, William Stafford Noble. Bioinformatics 2011
15

MEME SUITE: tools for motif discovery and searching.
Timothy L Bailey, Mikael Boden, Fabian A Buske, Martin Frith, Charles E Grant, Luca Clementi, Jingyuan Ren, Wilfred W Li, William S Noble. Nucleic Acids Res 2009
15


TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
Kristine Williams, Jesper Christensen, Marianne Terndrup Pedersen, Jens V Johansen, Paul A C Cloos, Juri Rappsilber, Kristian Helin. Nature 2011
696
15

A G-quadruplex-binding compound shows potent activity in human gemcitabine-resistant pancreatic cancer cells.
Ahmed Abdullah Ahmed, Chiara Marchetti, Stephan A Ohnmacht, Stephen Neidle. Sci Rep 2020
8
25

Small-molecule-induced DNA damage identifies alternative DNA structures in human genes.
Raphaël Rodriguez, Kyle M Miller, Josep V Forment, Charles R Bradshaw, Mehran Nikan, Sébastien Britton, Tobias Oelschlaegel, Blerta Xhemalce, Shankar Balasubramanian, Stephen P Jackson. Nat Chem Biol 2012
405
15

The Structure and Function of DNA G-Quadruplexes.
Jochen Spiegel, Santosh Adhikari, Shankar Balasubramanian. Trends Chem 2020
140
15

Targeting Multiple Effector Pathways in Pancreatic Ductal Adenocarcinoma with a G-Quadruplex-Binding Small Molecule.
Chiara Marchetti, Katherine G Zyner, Stephan A Ohnmacht, Mathew Robson, Shozeb M Haider, Jennifer P Morton, Giovanni Marsico, Tam Vo, Sarah Laughlin-Toth, Ahmed A Ahmed,[...]. J Med Chem 2018
58
15

Promise of G-Quadruplex Structure Binding Ligands as Epigenetic Modifiers with Anti-Cancer Effects.
Antara Sengupta, Akansha Ganguly, Shantanu Chowdhury. Molecules 2019
19
15

Landscape of G-quadruplex DNA structural regions in breast cancer.
Robert Hänsel-Hertsch, Angela Simeone, Abigail Shea, Winnie W I Hui, Katherine G Zyner, Giovanni Marsico, Oscar M Rueda, Alejandra Bruna, Alistair Martin, Xiaoyun Zhang,[...]. Nat Genet 2020
33
15

A non-canonical DNA structure is a binding motif for the transcription factor SP1 in vitro.
Eun-Ang Raiber, Ramon Kranaster, Enid Lam, Mehran Nikan, Shankar Balasubramanian. Nucleic Acids Res 2012
97
15

Integrative characterization of G-Quadruplexes in the three-dimensional chromatin structure.
Yue Hou, Fuyu Li, Rongxin Zhang, Sheng Li, Hongde Liu, Zhaohui S Qin, Xiao Sun. Epigenetics 2019
19
15

High-throughput sequencing of DNA G-quadruplex structures in the human genome.
Vicki S Chambers, Giovanni Marsico, Jonathan M Boutell, Marco Di Antonio, Geoffrey P Smith, Shankar Balasubramanian. Nat Biotechnol 2015
537
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.