A citation-based method for searching scientific literature

Isobel A MacGregor, Ian R Adams, Nick Gilbert. Biochem J 2019
Times Cited: 6







List of co-cited articles
39 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Condensin-driven remodelling of X chromosome topology during dosage compensation.
Emily Crane, Qian Bian, Rachel Patton McCord, Bryan R Lajoie, Bayly S Wheeler, Edward J Ralston, Satoru Uzawa, Job Dekker, Barbara J Meyer. Nature 2015
359
50

Formation of Chromosomal Domains by Loop Extrusion.
Geoffrey Fudenberg, Maxim Imakaev, Carolyn Lu, Anton Goloborodko, Nezar Abdennur, Leonid A Mirny. Cell Rep 2016
721
50

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
50

Fast gapped-read alignment with Bowtie 2.
Ben Langmead, Steven L Salzberg. Nat Methods 2012
50

Comprehensive mapping of long-range interactions reveals folding principles of the human genome.
Erez Lieberman-Aiden, Nynke L van Berkum, Louise Williams, Maxim Imakaev, Tobias Ragoczy, Agnes Telling, Ido Amit, Bryan R Lajoie, Peter J Sabo, Michael O Dorschner,[...]. Science 2009
50

A pathway for mitotic chromosome formation.
Johan H Gibcus, Kumiko Samejima, Anton Goloborodko, Itaru Samejima, Natalia Naumova, Johannes Nuebler, Masato T Kanemaki, Linfeng Xie, James R Paulson, William C Earnshaw,[...]. Science 2018
269
33

SMCHD1 Merges Chromosome Compartments and Assists Formation of Super-Structures on the Inactive X.
Chen-Yu Wang, Teddy Jégu, Hsueh-Ping Chu, Hyun Jung Oh, Jeannie T Lee. Cell 2018
64
33

The molecular hallmarks of epigenetic control.
C David Allis, Thomas Jenuwein. Nat Rev Genet 2016
948
33

Cohesin: its roles and mechanisms.
Kim Nasmyth, Christian H Haering. Annu Rev Genet 2009
670
33

DNA loop extrusion by human cohesin.
Iain F Davidson, Benedikt Bauer, Daniela Goetz, Wen Tang, Gordana Wutz, Jan-Michael Peters. Science 2019
203
33

A mechanism of cohesin-dependent loop extrusion organizes zygotic genome architecture.
Johanna Gassler, Hugo B Brandão, Maxim Imakaev, Ilya M Flyamer, Sabrina Ladstätter, Wendy A Bickmore, Jan-Michael Peters, Leonid A Mirny, Kikuë Tachibana. EMBO J 2017
147
33

The Sequence Alignment/Map format and SAMtools.
Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin. Bioinformatics 2009
33

Organization of the mitotic chromosome.
Natalia Naumova, Maxim Imakaev, Geoffrey Fudenberg, Ye Zhan, Bryan R Lajoie, Leonid A Mirny, Job Dekker. Science 2013
517
33

Human cohesin compacts DNA by loop extrusion.
Yoori Kim, Zhubing Shi, Hongshan Zhang, Ilya J Finkelstein, Hongtao Yu. Science 2019
186
33


deepTools2: a next generation web server for deep-sequencing data analysis.
Fidel Ramírez, Devon P Ryan, Björn Grüning, Vivek Bhardwaj, Fabian Kilpert, Andreas S Richter, Steffen Heyne, Friederike Dündar, Thomas Manke. Nucleic Acids Res 2016
33

STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
33

HTSeq--a Python framework to work with high-throughput sequencing data.
Simon Anders, Paul Theodor Pyl, Wolfgang Huber. Bioinformatics 2015
33

Inducible Degradation of the Human SMC5/6 Complex Reveals an Essential Role Only during Interphase.
Andrés Bueno Venegas, Toyoaki Natsume, Masato Kanemaki, Ian D Hickson. Cell Rep 2020
10
33

Loop extrusion: theory meets single-molecule experiments.
Edward J Banigan, Leonid A Mirny. Curr Opin Cell Biol 2020
31
33

Evolution of condensin and cohesin complexes driven by replacement of Kite by Hawk proteins.
Jonathan N Wells, Thomas G Gligoris, Kim A Nasmyth, Joseph A Marsh. Curr Biol 2017
53
33


SMC complexes: from DNA to chromosomes.
Frank Uhlmann. Nat Rev Mol Cell Biol 2016
253
33

Structure of Full-Length SMC and Rearrangements Required for Chromosome Organization.
Marie-Laure Diebold-Durand, Hansol Lee, Laura B Ruiz Avila, Haemin Noh, Ho-Chul Shin, Haeri Im, Florian P Bock, Frank Bürmann, Alexandre Durand, Alrun Basfeld,[...]. Mol Cell 2017
81
33



Structure and stability of cohesin's Smc1-kleisin interaction.
Christian H Haering, Doris Schoffnegger, Tatsuya Nishino, Wolfgang Helmhart, Kim Nasmyth, Jan Löwe. Mol Cell 2004
232
33


Cryo-EM structures of holo condensin reveal a subunit flip-flop mechanism.
Byung-Gil Lee, Fabian Merkel, Matteo Allegretti, Markus Hassler, Christopher Cawood, Léa Lecomte, Francis J O'Reilly, Ludwig R Sinn, Pilar Gutierrez-Escribano, Marc Kschonsak,[...]. Nat Struct Mol Biol 2020
21
33


Towards a Unified Model of SMC Complex Function.
Markus Hassler, Indra A Shaltiel, Christian H Haering. Curr Biol 2018
81
33

Organization of Chromosomal DNA by SMC Complexes.
Stanislau Yatskevich, James Rhodes, Kim Nasmyth. Annu Rev Genet 2019
76
33

CTCF sites display cell cycle-dependent dynamics in factor binding and nucleosome positioning.
Marlies E Oomen, Anders S Hansen, Yu Liu, Xavier Darzacq, Job Dekker. Genome Res 2019
47
33

Chromosomes Progress to Metaphase in Multiple Discrete Steps via Global Compaction/Expansion Cycles.
Zhangyi Liang, Denise Zickler, Mara Prentiss, Frederick S Chang, Guillaume Witz, Kazuhiro Maeshima, Nancy Kleckner. Cell 2015
63
33

Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization.
Elphège P Nora, Anton Goloborodko, Anne-Laure Valton, Johan H Gibcus, Alec Uebersohn, Nezar Abdennur, Job Dekker, Leonid A Mirny, Benoit G Bruneau. Cell 2017
626
33

Topological domains in mammalian genomes identified by analysis of chromatin interactions.
Jesse R Dixon, Siddarth Selvaraj, Feng Yue, Audrey Kim, Yan Li, Yin Shen, Ming Hu, Jun S Liu, Bing Ren. Nature 2012
33

Spatial partitioning of the regulatory landscape of the X-inactivation centre.
Elphège P Nora, Bryan R Lajoie, Edda G Schulz, Luca Giorgetti, Ikuhiro Okamoto, Nicolas Servant, Tristan Piolot, Nynke L van Berkum, Johannes Meisig, John Sedat,[...]. Nature 2012
33

Recombination, Pairing, and Synapsis of Homologs during Meiosis.
Denise Zickler, Nancy Kleckner. Cold Spring Harb Perspect Biol 2015
313
33

Dynamic reorganization of the genome shapes the recombination landscape in meiotic prophase.
Lucas Patel, Rhea Kang, Scott C Rosenberg, Yunjiang Qiu, Ramya Raviram, Sora Chee, Rong Hu, Bing Ren, Francesca Cole, Kevin D Corbett. Nat Struct Mol Biol 2019
52
33

Minor zygotic gene activation is essential for mouse preimplantation development.
Ken-Ichiro Abe, Satoshi Funaya, Dai Tsukioka, Machika Kawamura, Yutaka Suzuki, Masataka G Suzuki, Richard M Schultz, Fugaku Aoki. Proc Natl Acad Sci U S A 2018
44
16

HiC-Pro: an optimized and flexible pipeline for Hi-C data processing.
Nicolas Servant, Nelle Varoquaux, Bryan R Lajoie, Eric Viara, Chong-Jian Chen, Jean-Philippe Vert, Edith Heard, Job Dekker, Emmanuel Barillot. Genome Biol 2015
622
16

Cohesin Disrupts Polycomb-Dependent Chromosome Interactions in Embryonic Stem Cells.
James D P Rhodes, Angelika Feldmann, Benjamín Hernández-Rodríguez, Noelia Díaz, Jill M Brown, Nadezda A Fursova, Neil P Blackledge, Praveen Prathapan, Paula Dobrinic, Miles K Huseyin,[...]. Cell Rep 2020
43
16

Two independent modes of chromatin organization revealed by cohesin removal.
Wibke Schwarzer, Nezar Abdennur, Anton Goloborodko, Aleksandra Pekowska, Geoffrey Fudenberg, Yann Loe-Mie, Nuno A Fonseca, Wolfgang Huber, Christian H Haering, Leonid Mirny,[...]. Nature 2017
433
16

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions.
Daehwan Kim, Geo Pertea, Cole Trapnell, Harold Pimentel, Ryan Kelley, Steven L Salzberg. Genome Biol 2013
16

Higher-Order Inter-chromosomal Hubs Shape 3D Genome Organization in the Nucleus.
Sofia A Quinodoz, Noah Ollikainen, Barbara Tabak, Ali Palla, Jan Marten Schmidt, Elizabeth Detmar, Mason M Lai, Alexander A Shishkin, Prashant Bhat, Yodai Takei,[...]. Cell 2018
286
16


Resetting Epigenetic Memory by Reprogramming of Histone Modifications in Mammals.
Hui Zheng, Bo Huang, Bingjie Zhang, Yunlong Xiang, Zhenhai Du, Qianhua Xu, Yuanyuan Li, Qiujun Wang, Jing Ma, Xu Peng,[...]. Mol Cell 2016
160
16

Resetting histone modifications during human parental-to-zygotic transition.
Weikun Xia, Jiawei Xu, Guang Yu, Guidong Yao, Kai Xu, Xueshan Ma, Nan Zhang, Bofeng Liu, Tong Li, Zili Lin,[...]. Science 2019
58
16

Cell-cycle dynamics of chromosomal organization at single-cell resolution.
Takashi Nagano, Yaniv Lubling, Csilla Várnai, Carmel Dudley, Wing Leung, Yael Baran, Netta Mendelson Cohen, Steven Wingett, Peter Fraser, Amos Tanay. Nature 2017
300
16

The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome.
Michal R Gdula, Tatyana B Nesterova, Greta Pintacuda, Jonathan Godwin, Ye Zhan, Hakan Ozadam, Michael McClellan, Daniella Moralli, Felix Krueger, Catherine M Green,[...]. Nat Commun 2019
45
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.