A citation-based method for searching scientific literature

Sarah R Rustad, Ligia A Papale, Reid S Alisch. Curr Top Behav Neurosci 2019
Times Cited: 4







List of co-cited articles
11 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Tissue type is a major modifier of the 5-hydroxymethylcytosine content of human genes.
Colm E Nestor, Raffaele Ottaviano, James Reddington, Duncan Sproul, Diana Reinhardt, Donncha Dunican, Elad Katz, J Michael Dixon, David J Harrison, Richard R Meehan. Genome Res 2012
277
50

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Shinsuke Ito, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang. Nature 2010
50

5-Hydroxymethylcytosine is associated with enhancers and gene bodies in human embryonic stem cells.
Hume Stroud, Suhua Feng, Shannon Morey Kinney, Sriharsa Pradhan, Steven E Jacobsen. Genome Biol 2011
309
50

Genomic mapping of 5-hydroxymethylcytosine in the human brain.
Seung-Gi Jin, Xiwei Wu, Arthur X Li, Gerd P Pfeifer. Nucleic Acids Res 2011
260
50

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
50

The role of Tet3 DNA dioxygenase in epigenetic reprogramming by oocytes.
Tian-Peng Gu, Fan Guo, Hui Yang, Hai-Ping Wu, Gui-Fang Xu, Wei Liu, Zhi-Guo Xie, Linyu Shi, Xinyi He, Seung-gi Jin,[...]. Nature 2011
710
50

Tet1 regulates adult hippocampal neurogenesis and cognition.
Run-Rui Zhang, Qing-Yan Cui, Kiyohito Murai, Yen Ching Lim, Zachary D Smith, Shengnan Jin, Peng Ye, Luis Rosa, Yew Kok Lee, Hai-Ping Wu,[...]. Cell Stem Cell 2013
216
50

Tet1 is critical for neuronal activity-regulated gene expression and memory extinction.
Andrii Rudenko, Meelad M Dawlaty, Jinsoo Seo, Albert W Cheng, Jia Meng, Thuc Le, Kym F Faull, Rudolf Jaenisch, Li-Huei Tsai. Neuron 2013
271
50

Genome-wide analysis identifies a functional association of Tet1 and Polycomb repressive complex 2 in mouse embryonic stem cells.
Francesco Neri, Danny Incarnato, Anna Krepelova, Stefania Rapelli, Andrea Pagnani, Riccardo Zecchina, Caterina Parlato, Salvatore Oliviero. Genome Biol 2013
102
50

Selective chemical labeling reveals the genome-wide distribution of 5-hydroxymethylcytosine.
Chun-Xiao Song, Keith E Szulwach, Ye Fu, Qing Dai, Chengqi Yi, Xuekun Li, Yujing Li, Chih-Hsin Chen, Wen Zhang, Xing Jian,[...]. Nat Biotechnol 2011
688
50


Gene amplification and tumor progression.
O Brison. Biochim Biophys Acta 1993
173
25

Integrative analysis of 111 reference human epigenomes.
Anshul Kundaje, Wouter Meuleman, Jason Ernst, Misha Bilenky, Angela Yen, Alireza Heravi-Moussavi, Pouya Kheradpour, Zhizhuo Zhang, Jianrong Wang, Michael J Ziller,[...]. Nature 2015
25

Dynamic changes in 5-hydroxymethylation signatures underpin early and late events in drug exposed liver.
John P Thomson, Jennifer M Hunter, Harri Lempiäinen, Arne Müller, Rémi Terranova, Jonathan G Moggs, Richard R Meehan. Nucleic Acids Res 2013
60
25


Loss of 5-Hydroxymethylcytosine Is an Epigenetic Biomarker in Cutaneous T-Cell Lymphoma.
Lei Qiu, Fengjie Liu, Shengguo Yi, Xueying Li, Xiaoqing Liu, Cheng Xiao, Christine Guo Lian, Ping Tu, Yang Wang. J Invest Dermatol 2018
8
25

Bisulfite-free direct detection of 5-methylcytosine and 5-hydroxymethylcytosine at base resolution.
Yibin Liu, Paulina Siejka-Zielińska, Gergana Velikova, Ying Bi, Fang Yuan, Marketa Tomkova, Chunsen Bai, Lei Chen, Benjamin Schuster-Böckler, Chun-Xiao Song. Nat Biotechnol 2019
101
25

DNA methylation and histone modification regulate silencing of OPG during tumor progression.
Tung-Ying Lu, Cheng-Fu Kao, Chin-Tarng Lin, Dah-Yeou Huang, Chien-Yu Chiu, Yu-Shin Huang, Han-Chung Wu. J Cell Biochem 2009
34
25

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
25

TET1 is a tumour suppressor that inhibits colon cancer growth by derepressing inhibitors of the WNT pathway.
F Neri, D Dettori, D Incarnato, A Krepelova, S Rapelli, M Maldotti, C Parlato, P Paliogiannis, S Oliviero. Oncogene 2015
121
25

Circulating Tumor DNA Analyses as Markers of Recurrence Risk and Benefit of Adjuvant Therapy for Stage III Colon Cancer.
Jeanne Tie, Joshua D Cohen, Yuxuan Wang, Michael Christie, Koen Simons, Margaret Lee, Rachel Wong, Suzanne Kosmider, Sumitra Ananda, Joseph McKendrick,[...]. JAMA Oncol 2019
121
25



Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
25

Loss of heterozygosity 4q24 and TET2 mutations associated with myelodysplastic/myeloproliferative neoplasms.
Anna M Jankowska, Hadrian Szpurka, Ramon V Tiu, Hideki Makishima, Manuel Afable, Jungwon Huh, Christine L O'Keefe, Rebecca Ganetzky, Michael A McDevitt, Jaroslaw P Maciejewski. Blood 2009
286
25

TET1, a member of a novel protein family, is fused to MLL in acute myeloid leukemia containing the t(10;11)(q22;q23).
R B Lorsbach, J Moore, S Mathew, S C Raimondi, S T Mukatira, J R Downing. Leukemia 2003
293
25

Circulating tumoral DNA: Preanalytical validation and quality control in a diagnostic laboratory.
Sergey Nikolaev, Laure Lemmens, Thibaud Koessler, Jean-Louis Blouin, Thierry Nouspikel. Anal Biochem 2018
52
25


Age, breast cancer subtype approximation, and local recurrence after breast-conserving therapy.
Nils D Arvold, Alphonse G Taghian, Andrzej Niemierko, Rita F Abi Raad, Meera Sreedhara, Paul L Nguyen, Jennifer R Bellon, Julia S Wong, Barbara L Smith, Jay R Harris. J Clin Oncol 2011
270
25


Whole-genome analysis of the methylome and hydroxymethylome in normal and malignant lung and liver.
Xin Li, Yun Liu, Tal Salz, Kasper D Hansen, Andrew Feinberg. Genome Res 2016
52
25

Concordance of Circulating Tumor DNA and Matched Metastatic Tissue Biopsy in Prostate Cancer.
Alexander W Wyatt, Matti Annala, Rahul Aggarwal, Kevin Beja, Felix Feng, Jack Youngren, Adam Foye, Paul Lloyd, Matti Nykter, Tomasz M Beer,[...]. J Natl Cancer Inst 2017
162
25

Application of a low cost array-based technique - TAB-Array - for quantifying and mapping both 5mC and 5hmC at single base resolution in human pluripotent stem cells.
Kristopher L Nazor, Michael J Boland, Marina Bibikova, Brandy Klotzle, Miao Yu, Victoria L Glenn-Pratola, John P Schell, Ronald L Coleman, Mauricio C Cabral-da-Silva, Ulrich Schmidt,[...]. Genomics 2014
23
25

Adjuvant Pembrolizumab versus Placebo in Resected Stage III Melanoma.
Alexander M M Eggermont, Christian U Blank, Mario Mandala, Georgina V Long, Victoria Atkinson, Stéphane Dalle, Andrew Haydon, Mikhail Lichinitser, Adnan Khattak, Matteo S Carlino,[...]. N Engl J Med 2018
768
25

Hypoxia Drives Breast Tumor Malignancy through a TET-TNFα-p38-MAPK Signaling Axis.
Min-Zu Wu, Su-Feng Chen, Shin Nieh, Christopher Benner, Luo-Ping Ger, Chia-Ing Jan, Li Ma, Chien-Hung Chen, Tomoaki Hishida, Hong-Tai Chang,[...]. Cancer Res 2015
71
25


Challenges of using mass spectrometry as a bladder cancer biomarker discovery platform.
Eric Schiffer, Harald Mischak, Dan Theodorescu, Antonia Vlahou. World J Urol 2008
15
25

5-Hydroxymethylcytosine signatures in cell-free DNA provide information about tumor types and stages.
Chun-Xiao Song, Senlin Yin, Li Ma, Amanda Wheeler, Yu Chen, Yan Zhang, Bin Liu, Junjie Xiong, Weihan Zhang, Jiankun Hu,[...]. Cell Res 2017
91
25

Epigenetic mechanisms involved in the effects of stress exposure: focus on 5-hydroxymethylcytosine.
Laura M Hack, Alec L W Dick, Nadine Provençal. Environ Epigenet 2016
10
25

Frequent TET2 mutations in systemic mastocytosis: clinical, KITD816V and FIP1L1-PDGFRA correlates.
A Tefferi, R L Levine, K-H Lim, O Abdel-Wahab, T L Lasho, J Patel, C M Finke, A Mullally, C-Y Li, A Pardanani,[...]. Leukemia 2009
186
25

Laparoscopic Hepatectomy for Liver Cancer.
Akishige Kanazawa, Tadashi Tsukamoto, Sadatoshi Shimizu, Satoshi Yamamoto, Akihiro Murata, Shoji Kubo. Dig Dis 2015
8
25

Integrating the Epigenome to Identify Drivers of Hepatocellular Carcinoma.
Ryan A Hlady, Aishwarya Sathyanarayan, Joyce J Thompson, Dan Zhou, Qunfeng Wu, Kien Pham, Jeong-Heon Lee, Chen Liu, Keith D Robertson. Hepatology 2019
32
25

Genetic characterization of TET1, TET2, and TET3 alterations in myeloid malignancies.
Omar Abdel-Wahab, Ann Mullally, Cyrus Hedvat, Guillermo Garcia-Manero, Jay Patel, Martha Wadleigh, Sebastien Malinge, JinJuan Yao, Outi Kilpivaara, Rukhmi Bhat,[...]. Blood 2009
520
25





Role of non-coding sequence variants in cancer.
Ekta Khurana, Yao Fu, Dimple Chakravarty, Francesca Demichelis, Mark A Rubin, Mark Gerstein. Nat Rev Genet 2016
251
25

Current detection technologies for circulating tumor cells.
Zheyu Shen, Aiguo Wu, Xiaoyuan Chen. Chem Soc Rev 2017
166
25

Detection of mutant TET2 in myeloid malignancies other than myeloproliferative neoplasms: CMML, MDS, MDS/MPN and AML.
A Tefferi, K-H Lim, O Abdel-Wahab, T L Lasho, J Patel, M M Patnaik, C A Hanson, A Pardanani, D G Gilliland, R L Levine. Leukemia 2009
203
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.