A citation-based method for searching scientific literature

Petr Fajkus, Vratislav Peška, Michal Závodník, Miloslava Fojtová, Jana Fulnečková, Šimon Dobias, Agata Kilar, Martina Dvořáčková, Dagmar Zachová, Ivona Nečasová, Jason Sims, Eva Sýkorová, Jiří Fajkus. Nucleic Acids Res 2019
Times Cited: 20







List of co-cited articles
248 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Allium telomeres unmasked: the unusual telomeric sequence (CTCGGTTATGGG)n is synthesized by telomerase.
Petr Fajkus, Vratislav Peška, Zdeňka Sitová, Jana Fulnečková, Martina Dvořáčková, Roman Gogela, Eva Sýkorová, Jan Hapala, Jiří Fajkus. Plant J 2016
39
45

Telomere variability in the monocotyledonous plant order Asparagales.
E Sýkorová, K Y Lim, Z Kunická, M W Chase, M D Bennett, J Fajkus, A R Leitch. Proc Biol Sci 2003
74
40

A broad phylogenetic survey unveils the diversity and evolution of telomeres in eukaryotes.
Jana Fulnecková, Tereza Sevcíková, Jirí Fajkus, Alena Lukesová, Martin Lukes, Cestmír Vlcek, B Franz Lang, Eunsoo Kim, Marek Eliás, Eva Sykorová. Genome Biol Evol 2013
47
40

Origin, Diversity, and Evolution of Telomere Sequences in Plants.
Vratislav Peska, Sònia Garcia. Front Plant Sci 2020
15
53

Characterisation of an unusual telomere motif (TTTTTTAGGG)n in the plant Cestrum elegans (Solanaceae), a species with a large genome.
Vratislav Peška, Petr Fajkus, Miloslava Fojtová, Martina Dvořáčková, Jan Hapala, Vojtěch Dvořáček, Pavla Polanská, Andrew R Leitch, Eva Sýkorová, Jiří Fajkus. Plant J 2015
31
35

The conserved structure of plant telomerase RNA provides the missing link for an evolutionary pathway from ciliates to humans.
Jiarui Song, Dhenugen Logeswaran, Claudia Castillo-González, Yang Li, Sreyashree Bose, Behailu Birhanu Aklilu, Zeyang Ma, Alexander Polkhovskiy, Julian J-L Chen, Dorothy E Shippen. Proc Natl Acad Sci U S A 2019
9
77

Secondary structure of vertebrate telomerase RNA.
J L Chen, M A Blasco, C W Greider. Cell 2000
435
30

Two RNA subunits and POT1a are components of Arabidopsis telomerase.
Catherine Cifuentes-Rojas, Kalpana Kannan, Lin Tseng, Dorothy E Shippen. Proc Natl Acad Sci U S A 2011
56
30

A novel hypoxic stress-responsive long non-coding RNA transcribed by RNA polymerase III in Arabidopsis.
Juan Wu, Toshihiro Okada, Toru Fukushima, Takahiko Tsudzuki, Masahiro Sugiura, Yasushi Yukawa. RNA Biol 2012
44
30



Identification of telomerase RNAs in species of the Yarrowia clade provides insights into the co-evolution of telomerase, telomeric repeats and telomere-binding proteins.
Filip Červenák, Katarína Juríková, Hugo Devillers, Binyamin Kaffe, Areej Khatib, Erin Bonnell, Martina Sopkovičová, Raymund J Wellinger, Jozef Nosek, Yehuda Tzfati,[...]. Sci Rep 2019
13
46

Identification and comparative analysis of telomerase RNAs from Candida species reveal conservation of functional elements.
Stanislava Gunisova, Elhanan Elboher, Jozef Nosek, Valentin Gorkovoy, Yogev Brown, Jean-Francois Lucier, Nancy Laterreur, Raymund J Wellinger, Yehuda Tzfati, Lubomir Tomaska. RNA 2009
75
30

Telomeres and telomerase: three decades of progress.
Jerry W Shay, Woodring E Wright. Nat Rev Genet 2019
171
25

Evolutionary perspectives of telomerase RNA structure and function.
Joshua D Podlevsky, Julian J-L Chen. RNA Biol 2016
45
25

BAL31-NGS approach for identification of telomeres de novo in large genomes.
Vratislav Peška, Zdeňka Sitová, Petr Fajkus, Jiří Fajkus. Methods 2017
12
41

The absence of Arabidopsis-type telomeres in Cestrum and closely related genera Vestia and Sessea (Solanaceae): first evidence from eudicots.
Eva Sykorova, Kar Yoong Lim, Mark W Chase, Sandra Knapp, Ilia Judith Leitch, Andrew Rowland Leitch, Jiri Fajkus. Plant J 2003
63
25

Chlamydomonas telomere sequences are A+T-rich but contain three consecutive G-C base pairs.
M E Petracek, P A Lefebvre, C D Silflow, J Berman. Proc Natl Acad Sci U S A 1990
59
25

Telomerase: an RNP enzyme synthesizes DNA.
Elizabeth H Blackburn, Kathleen Collins. Cold Spring Harb Perspect Biol 2011
188
20

The common ancestral core of vertebrate and fungal telomerase RNAs.
Xiaodong Qi, Yang Li, Shinji Honda, Steve Hoffmann, Manja Marz, Axel Mosig, Joshua D Podlevsky, Peter F Stadler, Eric U Selker, Julian J-L Chen. Nucleic Acids Res 2013
48
20

Living with genome instability: plant responses to telomere dysfunction.
K Riha, T D McKnight, L R Griffing, D E Shippen. Science 2001
153
20

Biogenesis of telomerase ribonucleoproteins.
Emily D Egan, Kathleen Collins. RNA 2012
115
20

Template boundary in a yeast telomerase specified by RNA structure.
Y Tzfati, T B Fulton, J Roy, E H Blackburn. Science 2000
106
20

Shelterin-Mediated Telomere Protection.
Titia de Lange. Annu Rev Genet 2018
206
20

Centromere and telomere sequence alterations reflect the rapid genome evolution within the carnivorous plant genus Genlisea.
Trung D Tran, Hieu X Cao, Gabriele Jovtchev, Pavel Neumann, Petr Novák, Miloslava Fojtová, Giang T H Vu, Jiří Macas, Jiří Fajkus, Ingo Schubert,[...]. Plant J 2015
23
20

Aloe spp.--plants with vertebrate-like telomeric sequences.
Hanna Weiss, Harry Scherthan. Chromosome Res 2002
36
20

Synergism of the two Myb domains of Tay1 protein results in high affinity binding to telomeres.
Katarina Visacka, Ctirad Hofr, Smaranda Willcox, Ivona Necasova, Jana Pavlouskova, Regina Sepsiova, Michaela Wimmerova, Lucia Simonicova, Jozef Nosek, Jiri Fajkus,[...]. J Biol Chem 2012
16
25



The evolutionary origin of insect telomeric repeats, (TTAGG)n.
Magda Vítková, Jirí Král, Walther Traut, Jan Zrzavý, Frantisek Marec. Chromosome Res 2005
79
20

Mammalian telomeres end in a large duplex loop.
J D Griffith, L Comeau, S Rosenfield, R M Stansel, A Bianchi, H Moss, T de Lange. Cell 1999
20

Double-stranded telomeric DNA binding proteins: Diversity matters.
Filip Červenák, Katarína Juríková, Regina Sepšiová, Martina Neboháčová, Jozef Nosek, L'ubomír Tomáška. Cell Cycle 2017
15
26

Evolution of Telomeres in Schizosaccharomyces pombe and Its Possible Relationship to the Diversification of Telomere Binding Proteins.
Regina Sepsiova, Ivona Necasova, Smaranda Willcox, Katarina Prochazkova, Peter Gorilak, Jozef Nosek, Ctirad Hofr, Jack D Griffith, Lubomir Tomaska. PLoS One 2016
12
33

Disruption of the telomerase catalytic subunit gene from Arabidopsis inactivates telomerase and leads to a slow loss of telomeric DNA.
M S Fitzgerald, K Riha, F Gao, S Ren, T D McKnight, D E Shippen. Proc Natl Acad Sci U S A 1999
149
20

Evolutionary and biochemical analyses reveal conservation of the Brassicaceae telomerase ribonucleoprotein complex.
Kelly Dew-Budd, Julie Cheung, Kyle Palos, Evan S Forsythe, Mark A Beilstein. PLoS One 2020
5
80

Structure-function relationships in telomerase genes.
Eva Sýkorová, Jirí Fajkus. Biol Cell 2009
40
20

Human-like telomeres in Zostera marina reveal a mode of transition from the plant to the human telomeric sequences.
Vratislav Peska, Martin Mátl, Terezie Mandáková, Daniel Vitales, Petr Fajkus, Jiří Fajkus, Sònia Garcia. J Exp Bot 2020
5
80


An alternative telomerase RNA in Arabidopsis modulates enzyme activity in response to DNA damage.
Catherine Cifuentes-Rojas, Andrew D L Nelson, Kara A Boltz, Kalpana Kannan, Xintao She, Dorothy E Shippen. Genes Dev 2012
31
15


Infernal 1.1: 100-fold faster RNA homology searches.
Eric P Nawrocki, Sean R Eddy. Bioinformatics 2013
933
15


The biogenesis and regulation of telomerase holoenzymes.
Kathleen Collins. Nat Rev Mol Cell Biol 2006
206
15

The RNA component of human telomerase.
J Feng, W D Funk, S S Wang, S L Weinrich, A A Avilion, C P Chiu, R R Adams, E Chang, R C Allsopp, J Yu. Science 1995
15

Telomere and LINE-like elements at the termini of the Chlorella chromosome I.
T Higashiyama, Y Noutoshi, M Akiba, T Yamada. Nucleic Acids Symp Ser 1995
8
37


Centromeres were derived from telomeres during the evolution of the eukaryotic chromosome.
Alfredo Villasante, José P Abad, María Méndez-Lago. Proc Natl Acad Sci U S A 2007
47
15


Conservation of the human telomere sequence (TTAGGG)n among vertebrates.
J Meyne, R L Ratliff, R K Moyzis. Proc Natl Acad Sci U S A 1989
577
15

On the origin of telomeres: a glimpse at the pre-telomerase world.
Jozef Nosek, Peter Kosa, Lubomir Tomaska. Bioessays 2006
41
15


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.