A citation-based method for searching scientific literature

Penelope Kroustallaki, Lisa Lirussi, Sergio Carracedo, Panpan You, Q Ying Esbensen, Alexandra Götz, Laure Jobert, Lene Alsøe, Pål Sætrom, Sarantis Gagos, Hilde Nilsen. Cell Rep 2019
Times Cited: 9







List of co-cited articles
21 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The human base excision repair enzyme SMUG1 directly interacts with DKC1 and contributes to RNA quality control.
Laure Jobert, Hanne K Skjeldam, Bjørn Dalhus, Anastasia Galashevskaya, Cathrine Broberg Vågbø, Magnar Bjørås, Hilde Nilsen. Mol Cell 2013
40
55

Tet oxidizes thymine to 5-hydroxymethyluracil in mouse embryonic stem cell DNA.
Toni Pfaffeneder, Fabio Spada, Mirko Wagner, Caterina Brandmayr, Silvia K Laube, David Eisen, Matthias Truss, Jessica Steinbacher, Benjamin Hackner, Olga Kotljarova,[...]. Nat Chem Biol 2014
167
33

Identification of a new uracil-DNA glycosylase family by expression cloning using synthetic inhibitors.
K A Haushalter, M W Todd Stukenberg, M W Kirschner, G L Verdine. Curr Biol 1999
177
33

Uracil Accumulation and Mutagenesis Dominated by Cytosine Deamination in CpG Dinucleotides in Mice Lacking UNG and SMUG1.
Lene Alsøe, Antonio Sarno, Sergio Carracedo, Diana Domanska, Felix Dingler, Lisa Lirussi, Tanima SenGupta, Nuriye Basdag Tekin, Laure Jobert, Ludmil B Alexandrov,[...]. Sci Rep 2017
27
22

Human dyskerin: beyond telomeres.
Alberto Angrisani, Rosario Vicidomini, Mimmo Turano, Maria Furia. Biol Chem 2014
28
22

Chemical and structural effects of base modifications in messenger RNA.
Emily M Harcourt, Anna M Kietrys, Eric T Kool. Nature 2017
78
22

Excision of deaminated cytosine from the vertebrate genome: role of the SMUG1 uracil-DNA glycosylase.
H Nilsen, K A Haushalter, P Robins, D E Barnes, G L Verdine, T Lindahl. EMBO J 2001
147
22

Mammalian 5-formyluracil-DNA glycosylase. 2. Role of SMUG1 uracil-DNA glycosylase in repair of 5-formyluracil and other oxidized and deaminated base lesions.
Aya Masaoka, Mayumi Matsubara, Rei Hasegawa, Tamon Tanaka, Satofumi Kurisu, Hiroaki Terato, Yoshihiko Ohyama, Naoko Karino, Akira Matsuda, Hiroshi Ide. Biochemistry 2003
84
22

Single-strand selective monofunctional uracil-DNA glycosylase (SMUG1) deficiency is linked to aggressive breast cancer and predicts response to adjuvant therapy.
Tarek M A Abdel-Fatah, Nada Albarakati, Lara Bowell, Devika Agarwal, Paul Moseley, Claire Hawkes, Graham Ball, Stephen Chan, Ian O Ellis, Srinivasan Madhusudan. Breast Cancer Res Treat 2013
18
22


New perspectives in cancer biology from a study of canonical and non-canonical functions of base excision repair proteins with a focus on early steps.
Matilde Clarissa Malfatti, Giulia Antoniali, Marta Codrich, Silvia Burra, Giovanna Mangiapane, Emiliano Dalla, Gianluca Tell. Mutagenesis 2020
9
22

Base excision repair.
Hans E Krokan, Magnar Bjørås. Cold Spring Harb Perspect Biol 2013
496
22

Thymine DNA glycosylase is essential for active DNA demethylation by linked deamination-base excision repair.
Salvatore Cortellino, Jinfei Xu, Mara Sannai, Robert Moore, Elena Caretti, Antonio Cigliano, Madeleine Le Coz, Karthik Devarajan, Andy Wessels, Dianne Soprano,[...]. Cell 2011
532
22

The regulation and functions of the nuclear RNA exosome complex.
Cornelia Kilchert, Sina Wittmann, Lidia Vasiljeva. Nat Rev Mol Cell Biol 2016
163
22

Inhibition of telomerase RNA decay rescues telomerase deficiency caused by dyskerin or PARN defects.
Siddharth Shukla, Jens C Schmidt, Katherine C Goldfarb, Thomas R Cech, Roy Parker. Nat Struct Mol Biol 2016
61
22

Cryo-EM structure of substrate-bound human telomerase holoenzyme.
Thi Hoang Duong Nguyen, Jane Tam, Robert A Wu, Basil J Greber, Daniel Toso, Eva Nogales, Kathleen Collins. Nature 2018
87
22


An enhanced H/ACA RNP assembly mechanism for human telomerase RNA.
Emily D Egan, Kathleen Collins. Mol Cell Biol 2012
45
22

Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq.
Dan Dominissini, Sharon Moshitch-Moshkovitz, Schraga Schwartz, Mali Salmon-Divon, Lior Ungar, Sivan Osenberg, Karen Cesarkas, Jasmine Jacob-Hirsch, Ninette Amariglio, Martin Kupiec,[...]. Nature 2012
22


A pathology atlas of the human cancer transcriptome.
Mathias Uhlen, Cheng Zhang, Sunjae Lee, Evelina Sjöstedt, Linn Fagerberg, Gholamreza Bidkhori, Rui Benfeitas, Muhammad Arif, Zhengtao Liu, Fredrik Edfors,[...]. Science 2017
22

Defective repair of uracil causes telomere defects in mouse hematopoietic cells.
Haritha Vallabhaneni, Fang Zhou, Robert W Maul, Jaya Sarkar, Jinhu Yin, Ming Lei, Lea Harrington, Patricia J Gearhart, Yie Liu. J Biol Chem 2015
18
11

Defective repair of oxidative base lesions by the DNA glycosylase Nth1 associates with multiple telomere defects.
Haritha Vallabhaneni, Nathan O'Callaghan, Julia Sidorova, Yie Liu. PLoS Genet 2013
40
11

Characterization of oxidative guanine damage and repair in mammalian telomeres.
Zhilong Wang, David B Rhee, Jian Lu, Christina T Bohr, Fang Zhou, Haritha Vallabhaneni, Nadja C de Souza-Pinto, Yie Liu. PLoS Genet 2010
118
11

Base excision repair in a network of defence and tolerance.
H Nilsen, H E Krokan. Carcinogenesis 2001
157
11

Telomere reprogramming and maintenance in porcine iPS cells.
Guangzhen Ji, Weimin Ruan, Kai Liu, Fang Wang, Despoina Sakellariou, Jijun Chen, Yang Yang, Maja Okuka, Jianyong Han, Zhonghua Liu,[...]. PLoS One 2013
19
11

RAD52 and SLX4 act nonepistatically to ensure telomere stability during alternative telomere lengthening.
Priyanka Verma, Robert L Dilley, Tianpeng Zhang, Melina T Gyparaki, Yiwen Li, Roger A Greenberg. Genes Dev 2019
37
11

Telomere protection by TPP1/POT1 requires tethering to TIN2.
Kaori K Takai, Tatsuya Kibe, Jill R Donigian, David Frescas, Titia de Lange. Mol Cell 2011
137
11

Resolving Roadblocks to Telomere Replication.
Emily Mason-Osann, Himabindu Gali, Rachel Litman Flynn. Methods Mol Biol 2019
6
16

The role of SMARCAL1 in replication fork stability and telomere maintenance.
Natalia Lugli, Sotirios K Sotiriou, Thanos D Halazonetis. DNA Repair (Amst) 2017
10
11

Break-induced telomere synthesis underlies alternative telomere maintenance.
Robert L Dilley, Priyanka Verma, Nam Woo Cho, Harrison D Winters, Anne R Wondisford, Roger A Greenberg. Nature 2016
194
11

Proteomic Profiling Reveals a Specific Role for Translesion DNA Polymerase η in the Alternative Lengthening of Telomeres.
Laura Garcia-Exposito, Elodie Bournique, Valérie Bergoglio, Arindam Bose, Jonathan Barroso-Gonzalez, Sufang Zhang, Justin L Roncaioli, Marietta Lee, Callen T Wallace, Simon C Watkins,[...]. Cell Rep 2016
62
11

RAD51AP1 Is an Essential Mediator of Alternative Lengthening of Telomeres.
Jonathan Barroso-González, Laura García-Expósito, Song My Hoang, Michelle L Lynskey, Justin L Roncaioli, Arundhati Ghosh, Callen T Wallace, Mauro Modesti, Kara A Bernstein, Saumendra N Sarkar,[...]. Mol Cell 2019
4
25

BLM and SLX4 play opposing roles in recombination-dependent replication at human telomeres.
Alexander P Sobinoff, Joshua Am Allen, Axel A Neumann, Sile F Yang, Monica E Walsh, Jeremy D Henson, Roger R Reddel, Hilda A Pickett. EMBO J 2017
62
11

Alternative Lengthening of Telomeres: DNA Repair Pathways Converge.
Alexander P Sobinoff, Hilda A Pickett. Trends Genet 2017
68
11


A conserved motif within RAP1 has diversified roles in telomere protection and regulation in different organisms.
Yong Chen, Rekha Rai, Zi-Ren Zhou, Junko Kanoh, Cyril Ribeyre, Yuting Yang, Hong Zheng, Pascal Damay, Feng Wang, Hisayo Tsujii,[...]. Nat Struct Mol Biol 2011
65
11

WRN loss induces switching of telomerase-independent mechanisms of telomere elongation.
April Renee Sandy Gocha, Samir Acharya, Joanna Groden. PLoS One 2014
17
11

X-ray-induced telomeric instability in Atm-deficient mouse cells.
Barkhaa Undarmaa, Seiji Kodama, Keiji Suzuki, Otsura Niwa, Masami Watanabe. Biochem Biophys Res Commun 2004
22
11

NuRD-ZNF827 recruitment to telomeres creates a molecular scaffold for homologous recombination.
Dimitri Conomos, Roger R Reddel, Hilda A Pickett. Nat Struct Mol Biol 2014
62
11

Strand break-induced replication fork collapse leads to C-circles, C-overhangs and telomeric recombination.
Tianpeng Zhang, Zepeng Zhang, Gong Shengzhao, Xiaocui Li, Haiying Liu, Yong Zhao. PLoS Genet 2019
20
11

Pericentromeric instability and spontaneous emergence of human neoacrocentric and minute chromosomes in the alternative pathway of telomere lengthening.
Sarantis Gagos, Maria Chiourea, Agni Christodoulidou, Eftichia Apostolou, Christina Raftopoulou, Samuel Deustch, Charles-Edward Jefford, Irmgard Irminger-Finger, Jerry W Shay, Stylianos E Antonarakis. Cancer Res 2008
18
11

The PML-associated protein DEK regulates the balance of H3.3 loading on chromatin and is important for telomere integrity.
Kristina Ivanauskiene, Erwan Delbarre, James D McGhie, Thomas Küntziger, Lee H Wong, Philippe Collas. Genome Res 2014
38
11

SLX4IP Antagonizes Promiscuous BLM Activity during ALT Maintenance.
Stephanie Panier, Marija Maric, Graeme Hewitt, Emily Mason-Osann, Himabindu Gali, Anqi Dai, Adam Labadorf, Jean-Hugues Guervilly, Philip Ruis, Sandra Segura-Bayona,[...]. Mol Cell 2019
27
11

RTEL1 is a replisome-associated helicase that promotes telomere and genome-wide replication.
Jean-Baptiste Vannier, Sumit Sandhu, Mark I R Petalcorin, Xiaoli Wu, Zinnatun Nabi, Hao Ding, Simon J Boulton. Science 2013
121
11

Nuclear receptors regulate alternative lengthening of telomeres through a novel noncanonical FANCD2 pathway.
Mafei Xu, Jun Qin, Leiming Wang, Hui-Ju Lee, Chung-Yang Kao, Dan Liu, Zhou Songyang, Junjie Chen, Ming-Jer Tsai, Sophia Y Tsai. Sci Adv 2019
9
11

The function of classical and alternative non-homologous end-joining pathways in the fusion of dysfunctional telomeres.
Rekha Rai, Hong Zheng, Hua He, Ying Luo, Asha Multani, Phillip B Carpenter, Sandy Chang. EMBO J 2010
128
11

Does a sentinel or a subset of short telomeres determine replicative senescence?
Ying Zou, Agnel Sfeir, Sergei M Gryaznov, Jerry W Shay, Woodring E Wright. Mol Biol Cell 2004
191
11


Expression and differential regulation of human TERRA at several chromosome ends.
Marianna Feretzaki, Patricia Renck Nunes, Joachim Lingner. RNA 2019
21
11


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.