A citation-based method for searching scientific literature

Ana Ramos-Sáenz, Daniel González-Álvarez, Olga Rodríguez-Galán, Alfonso Rodríguez-Gil, Sonia G Gaspar, Eduardo Villalobo, Mercedes Dosil, Jesús de la Cruz. RNA 2019
Times Cited: 3







List of co-cited articles
9 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


The fifth essential DNA polymerase phi in Saccharomyces cerevisiae is localized to the nucleolus and plays an important role in synthesis of rRNA.
Kikuo Shimizu, Yasuo Kawasaki, Shin-Ichiro Hiraga, Maki Tawaramoto, Naomi Nakashima, Akio Sugino. Proc Natl Acad Sci U S A 2002
39
66

Pwp2 mediates UTP-B assembly via two structurally independent domains.
Fanny Boissier, Christina Maria Schmidt, Jan Linnemann, Sébastien Fribourg, Jorge Perez-Fernandez. Sci Rep 2017
7
66

Toward Time-Resolved Analysis of RNA Metabolism in Archaea Using 4-Thiouracil.
Robert Knüppel, Corinna Kuttenberger, Sébastien Ferreira-Cerca. Front Microbiol 2017
12
66



Ribosomal RNA synthesis in Saccharomyces cerevisiae.
S A Udem, J R Warner. J Mol Biol 1972
321
66

Tracking Distinct RNA Populations Using Efficient and Reversible Covalent Chemistry.
Erin E Duffy, Michael Rutenberg-Schoenberg, Catherine D Stark, Robert R Kitchen, Mark B Gerstein, Matthew D Simon. Mol Cell 2015
117
66


Pol5 is required for recycling of small subunit biogenesis factors and for formation of the peptide exit tunnel of the large ribosomal subunit.
Christina M Braun, Philipp Hackert, Catharina E Schmid, Markus T Bohnsack, Katherine E Bohnsack, Jorge Perez-Fernandez. Nucleic Acids Res 2020
6
66

60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm.
Tracy A Nissan, Jochen Bassler, Elisabeth Petfalski, David Tollervey, Ed Hurt. EMBO J 2002
285
33


UtpA and UtpB chaperone nascent pre-ribosomal RNA and U3 snoRNA to initiate eukaryotic ribosome assembly.
Mirjam Hunziker, Jonas Barandun, Elisabeth Petfalski, Dongyan Tan, Clémentine Delan-Forino, Kelly R Molloy, Kelly H Kim, Hywel Dunn-Davies, Yi Shi, Malik Chaker-Margot,[...]. Nat Commun 2016
49
33


In vitro reconstitution of yeast tUTP/UTP A and UTP B subcomplexes provides new insights into their modular architecture.
Gisela Pöll, Shuang Li, Uli Ohmayer, Thomas Hierlmeier, Philipp Milkereit, Jorge Perez-Fernandez. PLoS One 2014
18
33

The DEAD-box Protein Rok1 Orchestrates 40S and 60S Ribosome Assembly by Promoting the Release of Rrp5 from Pre-40S Ribosomes to Allow for 60S Maturation.
Sohail Khoshnevis, Isabel Askenasy, Matthew C Johnson, Maria D Dattolo, Crystal L Young-Erdos, M Elizabeth Stroupe, Katrin Karbstein. PLoS Biol 2016
28
33

The 5' end of yeast 5.8S rRNA is generated by exonucleases from an upstream cleavage site.
Y Henry, H Wood, J P Morrissey, E Petfalski, S Kearsey, D Tollervey. EMBO J 1994
264
33

Architecture of the yeast small subunit processome.
Malik Chaker-Margot, Jonas Barandun, Mirjam Hunziker, Sebastian Klinge. Science 2017
91
33

Structural transitions during large ribosomal subunit maturation analyzed by tethered nuclease structure probing in S. cerevisiae.
Gisela Pöll, Christian Müller, Malena Bodden, Fabian Teubl, Norbert Eichner, Gerhard Lehmann, Joachim Griesenbeck, Herbert Tschochner, Philipp Milkereit. PLoS One 2017
4
33

3.2-Å-resolution structure of the 90S preribosome before A1 pre-rRNA cleavage.
Jingdong Cheng, Nikola Kellner, Otto Berninghausen, Ed Hurt, Roland Beckmann. Nat Struct Mol Biol 2017
73
33

Secondary structures of rRNAs from all three domains of life.
Anton S Petrov, Chad R Bernier, Burak Gulen, Chris C Waterbury, Eli Hershkovits, Chiaolong Hsiao, Stephen C Harvey, Nicholas V Hud, George E Fox, Roger M Wartell,[...]. PLoS One 2014
79
33

A hierarchical model for assembly of eukaryotic 60S ribosomal subunit domains.
Michael Gamalinda, Uli Ohmayer, Jelena Jakovljevic, Beril Kumcuoglu, Joshua Woolford, Bertrade Mbom, Lawrence Lin, John L Woolford. Genes Dev 2014
88
33

rRNA maturation in yeast cells depleted of large ribosomal subunit proteins.
Gisela Pöll, Tobias Braun, Jelena Jakovljevic, Andreas Neueder, Steffen Jakob, John L Woolford, Herbert Tschochner, Philipp Milkereit. PLoS One 2009
80
33

Comparison of the yeast and human nuclear exosome complexes.
Katherine E Sloan, Claudia Schneider, Nicholas J Watkins. Biochem Soc Trans 2012
32
33

The 90S preribosome is a multimodular structure that is assembled through a hierarchical mechanism.
Jorge Pérez-Fernández, Angel Román, Javier De Las Rivas, Xosé R Bustelo, Mercedes Dosil. Mol Cell Biol 2007
134
33

RNA polymerase I transcription and pre-rRNA processing are linked by specific SSU processome components.
Jennifer E G Gallagher, David A Dunbar, Sander Granneman, Brianna M Mitchell, Yvonne Osheim, Ann L Beyer, Susan J Baserga. Genes Dev 2004
188
33


Architecture of the 90S Pre-ribosome: A Structural View on the Birth of the Eukaryotic Ribosome.
Markus Kornprobst, Martin Turk, Nikola Kellner, Jingdong Cheng, Dirk Flemming, Isabelle Koš-Braun, Martin Koš, Matthias Thoms, Otto Berninghausen, Roland Beckmann,[...]. Cell 2016
139
33

A large nucleolar U3 ribonucleoprotein required for 18S ribosomal RNA biogenesis.
François Dragon, Jennifer E G Gallagher, Patricia A Compagnone-Post, Brianna M Mitchell, Kara A Porwancher, Karen A Wehner, Steven Wormsley, Robert E Settlage, Jeffrey Shabanowitz, Yvonne Osheim,[...]. Nature 2002
535
33

Accurate processing of a eukaryotic precursor ribosomal RNA by ribonuclease MRP in vitro.
Z Lygerou, C Allmang, D Tollervey, B Séraphin. Science 1996
210
33

RNA helicases mediate structural transitions and compositional changes in pre-ribosomal complexes.
Lukas Brüning, Philipp Hackert, Roman Martin, Jimena Davila Gallesio, Gerald Ryan R Aquino, Henning Urlaub, Katherine E Sloan, Markus T Bohnsack. Nat Commun 2018
16
33

Transcriptome-wide analysis of alternative routes for RNA substrates into the exosome complex.
Clémentine Delan-Forino, Claudia Schneider, David Tollervey. PLoS Genet 2017
26
33

Hierarchical recruitment into nascent ribosomes of assembly factors required for 27SB pre-rRNA processing in Saccharomyces cerevisiae.
Jason Talkish, Jingyu Zhang, Jelena Jakovljevic, Edward W Horsey, John L Woolford. Nucleic Acids Res 2012
49
33

Yeast polypeptide exit tunnel ribosomal proteins L17, L35 and L37 are necessary to recruit late-assembling factors required for 27SB pre-rRNA processing.
Michael Gamalinda, Jelena Jakovljevic, Reyes Babiano, Jason Talkish, Jesús de la Cruz, John L Woolford. Nucleic Acids Res 2013
42
33


Prp43 bound at different sites on the pre-rRNA performs distinct functions in ribosome synthesis.
Markus T Bohnsack, Roman Martin, Sander Granneman, Maike Ruprecht, Enrico Schleiff, David Tollervey. Mol Cell 2009
128
33

Visualizing the Assembly Pathway of Nucleolar Pre-60S Ribosomes.
Lukas Kater, Matthias Thoms, Clara Barrio-Garcia, Jingdong Cheng, Sherif Ismail, Yasar Luqman Ahmed, Gert Bange, Dieter Kressler, Otto Berninghausen, Irmgard Sinning,[...]. Cell 2017
96
33

Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae.
M S Longtine, A McKenzie, D J Demarini, N G Shah, A Wach, A Brachat, P Philippsen, J R Pringle. Yeast 1998
33

Role and dynamics of the ribosomal protein P0 and its related trans-acting factor Mrt4 during ribosome assembly in Saccharomyces cerevisiae.
María Rodríguez-Mateos, Juan J García-Gómez, Rosario Francisco-Velilla, Miguel Remacha, Jesús de la Cruz, Juan P G Ballesta. Nucleic Acids Res 2009
57
33

Molecular architecture of the 90S small subunit pre-ribosome.
Qi Sun, Xing Zhu, Jia Qi, Weidong An, Pengfei Lan, Dan Tan, Rongchang Chen, Bing Wang, Sanduo Zheng, Cheng Zhang,[...]. Elife 2017
103
33

A translation-like cycle is a quality control checkpoint for maturing 40S ribosome subunits.
Bethany S Strunk, Megan N Novak, Crystal L Young, Katrin Karbstein. Cell 2012
188
33


The association of late-acting snoRNPs with human pre-ribosomal complexes requires the RNA helicase DDX21.
Katherine E Sloan, Matthias S Leisegang, Carmen Doebele, Ana S Ramírez, Stefan Simm, Charlotta Safferthal, Jens Kretschmer, Tobias Schorge, Stavroula Markoutsa, Sara Haag,[...]. Nucleic Acids Res 2015
51
33

Evolutionarily conserved function of RRP36 in early cleavages of the pre-rRNA and production of the 40S ribosomal subunit.
Marie Gérus, Chrystelle Bonnart, Michèle Caizergues-Ferrer, Yves Henry, Anthony K Henras. Mol Cell Biol 2010
21
33

FLEXBAR-Flexible Barcode and Adapter Processing for Next-Generation Sequencing Platforms.
Matthias Dodt, Johannes T Roehr, Rina Ahmed, Christoph Dieterich. Biology (Basel) 2012
389
33

Carboxy terminal modifications of the P0 protein reveal alternative mechanisms of nuclear ribosomal stalk assembly.
Rosario Francisco-Velilla, Miguel Remacha, Juan P G Ballesta. Nucleic Acids Res 2013
7
33

Diverse roles of assembly factors revealed by structures of late nuclear pre-60S ribosomes.
Shan Wu, Beril Tutuncuoglu, Kaige Yan, Hailey Brown, Yixiao Zhang, Dan Tan, Michael Gamalinda, Yi Yuan, Zhifei Li, Jelena Jakovljevic,[...]. Nature 2016
129
33

Myb-binding protein 1a (Mybbp1a) regulates levels and processing of pre-ribosomal RNA.
Julia Hochstatter, Michael Hölzel, Michaela Rohrmoser, Lothar Schermelleh, Heinrich Leonhardt, Rebecca Keough, Thomas J Gonda, Axel Imhof, Dirk Eick, Gernot Längst,[...]. J Biol Chem 2012
29
33

Studies on the assembly characteristics of large subunit ribosomal proteins in S. cerevisae.
Uli Ohmayer, Michael Gamalinda, Martina Sauert, Julius Ossowski, Gisela Pöll, Jan Linnemann, Thomas Hierlmeier, Jorge Perez-Fernandez, Beril Kumcuoglu, Isabelle Leger-Silvestre,[...]. PLoS One 2013
43
33


In vivo mutational analysis of ribosomal RNA in Saccharomyces cerevisiae.
J Venema, R J Planta, H A Raué. Methods Mol Biol 1998
49
33


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.