A citation-based method for searching scientific literature

Mirunalini Ravichandran, Run Lei, Qin Tang, Yilin Zhao, Joun Lee, Liyang Ma, Stephanie Chrysanthou, Benjamin M Lorton, Ales Cvekl, David Shechter, Deyou Zheng, Meelad M Dawlaty. Cell Rep 2019
Times Cited: 14







List of co-cited articles
230 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
57

Tet proteins can convert 5-methylcytosine to 5-formylcytosine and 5-carboxylcytosine.
Shinsuke Ito, Li Shen, Qing Dai, Susan C Wu, Leonard B Collins, James A Swenberg, Chuan He, Yi Zhang. Science 2011
50

Tet1 and Tet2 regulate 5-hydroxymethylcytosine production and cell lineage specification in mouse embryonic stem cells.
Kian Peng Koh, Akiko Yabuuchi, Sridhar Rao, Yun Huang, Kerrianne Cunniff, Julie Nardone, Asta Laiho, Mamta Tahiliani, Cesar A Sommer, Gustavo Mostoslavsky,[...]. Cell Stem Cell 2011
554
50

TETonic shift: biological roles of TET proteins in DNA demethylation and transcription.
William A Pastor, L Aravind, Anjana Rao. Nat Rev Mol Cell Biol 2013
567
50

Modulation of TET2 expression and 5-methylcytosine oxidation by the CXXC domain protein IDAX.
Myunggon Ko, Jungeun An, Hozefa S Bandukwala, Lukas Chavez, Tarmo Aijö, William A Pastor, Matthew F Segal, Huiming Li, Kian Peng Koh, Harri Lähdesmäki,[...]. Nature 2013
250
50

DNA methylation: roles in mammalian development.
Zachary D Smith, Alexander Meissner. Nat Rev Genet 2013
42

Role of Tet proteins in 5mC to 5hmC conversion, ES-cell self-renewal and inner cell mass specification.
Shinsuke Ito, Ana C D'Alessio, Olena V Taranova, Kwonho Hong, Lawrence C Sowers, Yi Zhang. Nature 2010
42

TET1 and hydroxymethylcytosine in transcription and DNA methylation fidelity.
Kristine Williams, Jesper Christensen, Marianne Terndrup Pedersen, Jens V Johansen, Paul A C Cloos, Juri Rappsilber, Kristian Helin. Nature 2011
725
42

Tet proteins connect the O-linked N-acetylglucosamine transferase Ogt to chromatin in embryonic stem cells.
Pietro Vella, Andrea Scelfo, Sriganesh Jammula, Fulvio Chiacchiera, Kristine Williams, Alessandro Cuomo, Alessandra Roberto, Jesper Christensen, Tiziana Bonaldi, Kristian Helin,[...]. Mol Cell 2013
227
42

Dual functions of Tet1 in transcriptional regulation in mouse embryonic stem cells.
Hao Wu, Ana C D'Alessio, Shinsuke Ito, Kai Xia, Zhibin Wang, Kairong Cui, Keji Zhao, Yi Eve Sun, Yi Zhang. Nature 2011
475
42

CXXC5 regulates differentiation of C2C12 myoblasts into myocytes.
Guangming Li, Xiangli Ye, Xiyang Peng, Yun Deng, Wuzhou Yuan, Yongqing Li, Xiaoyang Mo, Xijun Wang, Yongqi Wan, Xianchu Liu,[...]. J Muscle Res Cell Motil 2014
14
35

CXXC5 is a transcriptional activator of Flk-1 and mediates bone morphogenic protein-induced endothelial cell differentiation and vessel formation.
Hyun-Yi Kim, Dong-Hwa Yang, Song-Weon Shin, Mi-Yeon Kim, Jae-Hyun Yoon, Suhyun Kim, Hae-Chul Park, Dong Woo Kang, Dosik Min, Man-Wook Hur,[...]. FASEB J 2014
27
35

CXXC5 is a novel BMP4-regulated modulator of Wnt signaling in neural stem cells.
Therese Andersson, Erik Södersten, Joshua K Duckworth, Anna Cascante, Nicolas Fritz, Paola Sacchetti, Igor Cervenka, Vitezslav Bryja, Ola Hermanson. J Biol Chem 2009
79
35

The Dishevelled-binding protein CXXC5 negatively regulates cutaneous wound healing.
Soung-Hoon Lee, Mi-Yeon Kim, Hyun-Yi Kim, Young-Mi Lee, Heesu Kim, Kyoung Ae Nam, Mi Ryung Roh, Do Sik Min, Kee Yang Chung, Kang-Yell Choi. J Exp Med 2015
38
35

Epigenetic regulator CXXC5 recruits DNA demethylase Tet2 to regulate TLR7/9-elicited IFN response in pDCs.
Shixin Ma, Xiaoling Wan, Zihou Deng, Lei Shi, Congfang Hao, Zhenyuan Zhou, Chun Zhou, Yiyuan Fang, Jinghua Liu, Jing Yang,[...]. J Exp Med 2017
52
35

Functional involvement of RINF, retinoid-inducible nuclear factor (CXXC5), in normal and tumoral human myelopoiesis.
Frédéric Pendino, Eric Nguyen, Inge Jonassen, Bjarte Dysvik, Abdulkader Azouz, Michel Lanotte, Evelyne Ségal-Bendirdjian, Johan R Lillehaug. Blood 2009
45
35

NANOG-dependent function of TET1 and TET2 in establishment of pluripotency.
Yael Costa, Junjun Ding, Thorold W Theunissen, Francesco Faiola, Timothy A Hore, Pavel V Shliaha, Miguel Fidalgo, Arven Saunders, Moyra Lawrence, Sabine Dietmann,[...]. Nature 2013
292
35

Crystal structure of TET2-DNA complex: insight into TET-mediated 5mC oxidation.
Lulu Hu, Ze Li, Jingdong Cheng, Qinhui Rao, Wei Gong, Mengjie Liu, Yujiang Geno Shi, Jiayu Zhu, Ping Wang, Yanhui Xu. Cell 2013
244
35

Cooperative Action between SALL4A and TET Proteins in Stepwise Oxidation of 5-Methylcytosine.
Jun Xiong, Zhuqiang Zhang, Jiayu Chen, Hua Huang, Yali Xu, Xiaojun Ding, Yong Zheng, Ryuichi Nishinakamura, Guo-Liang Xu, Hailin Wang,[...]. Mol Cell 2016
74
35

Tet2 is required to resolve inflammation by recruiting Hdac2 to specifically repress IL-6.
Qian Zhang, Kai Zhao, Qicong Shen, Yanmei Han, Yan Gu, Xia Li, Dezhi Zhao, Yiqi Liu, Chunmei Wang, Xiang Zhang,[...]. Nature 2015
426
35

Phosphorylation of TET proteins is regulated via O-GlcNAcylation by the O-linked N-acetylglucosamine transferase (OGT).
Christina Bauer, Klaus Göbel, Nagarjuna Nagaraj, Christian Colantuoni, Mengxi Wang, Udo Müller, Elisabeth Kremmer, Andrea Rottach, Heinrich Leonhardt. J Biol Chem 2015
80
35

Non-catalytic Roles of Tet2 Are Essential to Regulate Hematopoietic Stem and Progenitor Cell Homeostasis.
Kyoko Ito, Joun Lee, Stephanie Chrysanthou, Yilin Zhao, Katherine Josephs, Hiroyo Sato, Julie Teruya-Feldstein, Deyou Zheng, Meelad M Dawlaty, Keisuke Ito. Cell Rep 2019
41
35

TET2 promotes histone O-GlcNAcylation during gene transcription.
Qiang Chen, Yibin Chen, Chunjing Bian, Ryoji Fujiki, Xiaochun Yu. Nature 2013
358
35

RINF (CXXC5) is overexpressed in solid tumors and is an unfavorable prognostic factor in breast cancer.
S Knappskog, L M Myklebust, C Busch, T Aloysius, J E Varhaug, P E Lønning, J R Lillehaug, F Pendino. Ann Oncol 2011
30
28

The CXXC finger 5 protein is required for DNA damage-induced p53 activation.
Min ZHANG, RuiPeng WANG, YanYi WANG, FeiCi DIAO, Fei LU, Dong GAO, DanYing CHEN, ZhongHe ZHAI, HongBing SHU. Sci China C Life Sci 2009
23
28

Discovery of novel protein partners of the transcription factor FOXL2 provides insights into its physiopathological roles.
David L'Hôte, Adrien Georges, Anne Laure Todeschini, Jae-Hong Kim, Bérénice A Benayoun, Jeehyeong Bae, Reiner A Veitia. Hum Mol Genet 2012
33
28

CXXC5 plays a role as a transcription activator for myelin genes on oligodendrocyte differentiation.
Mi-Yeon Kim, Hyun-Yi Kim, Jiso Hong, Daesoo Kim, Hyojung Lee, Eunji Cheong, Yangsin Lee, Jürgen Roth, Dong Goo Kim, Do Sik Min,[...]. Glia 2016
17
28

A novel Wilms tumor 1 (WT1) target gene negatively regulates the WNT signaling pathway.
Myoung Shin Kim, Seung Kew Yoon, Frank Bollig, Jirouta Kitagaki, Wonhee Hur, Nathan J Whye, Yun-Ping Wu, Miguel N Rivera, Jik Young Park, Ho-Shik Kim,[...]. J Biol Chem 2010
75
28


CXXC5 is a negative-feedback regulator of the Wnt/β-catenin pathway involved in osteoblast differentiation.
H-Y Kim, J-Y Yoon, J-H Yun, K-W Cho, S-H Lee, Y-M Rhee, H-S Jung, H J Lim, H Lee, J Choi,[...]. Cell Death Differ 2015
40
28

Oxygen-dependent expression of cytochrome c oxidase subunit 4-2 gene expression is mediated by transcription factors RBPJ, CXXC5 and CHCHD2.
Siddhesh Aras, Oleg Pak, Natascha Sommer, Russell Finley, Maik Hüttemann, Norbert Weissmann, Lawrence I Grossman. Nucleic Acids Res 2013
115
28

Discovery of novel vitamin D receptor interacting proteins that modulate 1,25-dihydroxyvitamin D3 signaling.
Pamela A Marshall, Zachary Hernandez, Ichiro Kaneko, Tim Widener, Christa Tabacaru, Izayadeth Aguayo, Peter W Jurutka. J Steroid Biochem Mol Biol 2012
17
28

CXXC5: A novel regulator and coordinator of TGF-β, BMP and Wnt signaling.
Xiangyang Xiong, Shuo Tu, Jianbin Wang, Shiwen Luo, Xiaohua Yan. J Cell Mol Med 2019
24
28

CXXC5 suppresses hepatocellular carcinoma by promoting TGF-β-induced cell cycle arrest and apoptosis.
Xiaohua Yan, Jingyi Wu, Quanlong Jiang, Hao Cheng, Jing-Dong J Han, Ye-Guang Chen. J Mol Cell Biol 2018
26
28

ZF-CxxC domain-containing proteins, CpG islands and the chromatin connection.
Hannah K Long, Neil P Blackledge, Robert J Klose. Biochem Soc Trans 2013
149
28

Tet-mediated formation of 5-carboxylcytosine and its excision by TDG in mammalian DNA.
Yu-Fei He, Bin-Zhong Li, Zheng Li, Peng Liu, Yang Wang, Qingyu Tang, Jianping Ding, Yingying Jia, Zhangcheng Chen, Lin Li,[...]. Science 2011
28

Combined deficiency of Tet1 and Tet2 causes epigenetic abnormalities but is compatible with postnatal development.
Meelad M Dawlaty, Achim Breiling, Thuc Le, Günter Raddatz, M Inmaculada Barrasa, Albert W Cheng, Qing Gao, Benjamin E Powell, Zhe Li, Mingjiang Xu,[...]. Dev Cell 2013
302
28

Sin3a-Tet1 interaction activates gene transcription and is required for embryonic stem cell pluripotency.
Fugui Zhu, Qianshu Zhu, Dan Ye, Qingquan Zhang, Yiwei Yang, Xudong Guo, Zhenping Liu, Zeyidan Jiapaer, Xiaoping Wan, Guiying Wang,[...]. Nucleic Acids Res 2018
26
28

Loss of Tet enzymes compromises proper differentiation of embryonic stem cells.
Meelad M Dawlaty, Achim Breiling, Thuc Le, M Inmaculada Barrasa, Günter Raddatz, Qing Gao, Benjamin E Powell, Albert W Cheng, Kym F Faull, Frank Lyko,[...]. Dev Cell 2014
212
28

Sin3A recruits Tet1 to the PAH1 domain via a highly conserved Sin3-Interaction Domain.
Aditya Chandru, Neil Bate, Geerten W Vuister, Shaun M Cowley. Sci Rep 2018
16
28

OGT binds a conserved C-terminal domain of TET1 to regulate TET1 activity and function in development.
Joel Hrit, Leeanne Goodrich, Cheng Li, Bang-An Wang, Ji Nie, Xiaolong Cui, Elizabeth Allene Martin, Eric Simental, Jenna Fernandez, Monica Yun Liu,[...]. Elife 2018
30
28

TET proteins safeguard bivalent promoters from de novo methylation in human embryonic stem cells.
Nipun Verma, Heng Pan, Louis C Doré, Abhijit Shukla, Qing V Li, Bobbie Pelham-Webb, Virginia Teijeiro, Federico González, Andrei Krivtsov, Chan-Jung Chang,[...]. Nat Genet 2018
112
28

CXXC5 as an unmethylated CpG dinucleotide binding protein contributes to estrogen-mediated cellular proliferation.
Gamze Ayaz, Negin Razizadeh, Pelin Yaşar, Gizem Kars, Deniz Cansen Kahraman, Özge Saatci, Özgür Şahin, Rengül Çetin-Atalay, Mesut Muyan. Sci Rep 2020
9
44


TET2 and TET3 regulate GlcNAcylation and H3K4 methylation through OGT and SET1/COMPASS.
Rachel Deplus, Benjamin Delatte, Marie K Schwinn, Matthieu Defrance, Jacqui Méndez, Nancy Murphy, Mark A Dawson, Michael Volkmar, Pascale Putmans, Emilie Calonne,[...]. EMBO J 2013
341
28

Age-related clonal hematopoiesis associated with adverse outcomes.
Siddhartha Jaiswal, Pierre Fontanillas, Jason Flannick, Alisa Manning, Peter V Grauman, Brenton G Mar, R Coleman Lindsley, Craig H Mermel, Noel Burtt, Alejandro Chavez,[...]. N Engl J Med 2014
28

CRL4(VprBP) E3 ligase promotes monoubiquitylation and chromatin binding of TET dioxygenases.
Tadashi Nakagawa, Lei Lv, Makiko Nakagawa, Yanbao Yu, Chao Yu, Ana C D'Alessio, Keiko Nakayama, Heng-Yu Fan, Xian Chen, Yue Xiong. Mol Cell 2015
71
28

TET2 Deficiency Causes Germinal Center Hyperplasia, Impairs Plasma Cell Differentiation, and Promotes B-cell Lymphomagenesis.
Pilar M Dominguez, Hussein Ghamlouch, Wojciech Rosikiewicz, Parveen Kumar, Wendy Béguelin, Lorena Fontán, Martín A Rivas, Patrycja Pawlikowska, Marine Armand, Enguerran Mouly,[...]. Cancer Discov 2018
78
28

Acetylation Enhances TET2 Function in Protecting against Abnormal DNA Methylation during Oxidative Stress.
Yang W Zhang, Zhihong Wang, Wenbing Xie, Yi Cai, Limin Xia, Hariharan Easwaran, Jianjun Luo, Ray-Whay Chiu Yen, Yana Li, Stephen B Baylin. Mol Cell 2017
84
28

Dynamic readers for 5-(hydroxy)methylcytosine and its oxidized derivatives.
Cornelia G Spruijt, Felix Gnerlich, Arne H Smits, Toni Pfaffeneder, Pascal W T C Jansen, Christina Bauer, Martin Münzel, Mirko Wagner, Markus Müller, Fariha Khan,[...]. Cell 2013
691
28


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.