A citation-based method for searching scientific literature


List of co-cited articles
15 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


UCSF Chimera--a visualization system for exploratory research and analysis.
Eric F Pettersen, Thomas D Goddard, Conrad C Huang, Gregory S Couch, Daniel M Greenblatt, Elaine C Meng, Thomas E Ferrin. J Comput Chem 2004
50

Mechanistic insights into bacterial AAA+ proteases and protein-remodelling machines.
Adrian O Olivares, Tania A Baker, Robert T Sauer. Nat Rev Microbiol 2016
157
50

Substrate-engaged 26S proteasome structures reveal mechanisms for ATP-hydrolysis-driven translocation.
Andres H de la Peña, Ellen A Goodall, Stephanie N Gates, Gabriel C Lander, Andreas Martin. Science 2018
121
50

Coot: model-building tools for molecular graphics.
Paul Emsley, Kevin Cowtan. Acta Crystallogr D Biol Crystallogr 2004
50

UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Thomas D Goddard, Conrad C Huang, Elaine C Meng, Eric F Pettersen, Gregory S Couch, John H Morris, Thomas E Ferrin. Protein Sci 2018
50

Ratchet-like polypeptide translocation mechanism of the AAA+ disaggregase Hsp104.
Stephanie N Gates, Adam L Yokom, JiaBei Lin, Meredith E Jackrel, Alexandrea N Rizo, Nathan M Kendsersky, Courtney E Buell, Elizabeth A Sweeny, Korrie L Mack, Edward Chuang,[...]. Science 2017
151
50

Structure of a AAA+ unfoldase in the process of unfolding substrate.
Zev A Ripstein, Rui Huang, Rafal Augustyniak, Lewis E Kay, John L Rubinstein. Elife 2017
82
50

Structural Basis for the Magnesium-Dependent Activation and Hexamerization of the Lon AAA+ Protease.
Shih-Chieh Su, Chien-Chu Lin, Hui-Chung Tai, Mu-Yueh Chang, Meng-Ru Ho, C Satheesan Babu, Jiahn-Haur Liao, Shih-Hsiung Wu, Yuan-Chih Chang, Carmay Lim,[...]. Structure 2016
19
50

ATP-dependent Lon protease controls tumor bioenergetics by reprogramming mitochondrial activity.
Pedro M Quirós, Yaiza Español, Rebeca Acín-Pérez, Francisco Rodríguez, Clea Bárcena, Kenta Watanabe, Enrique Calvo, Marta Loureiro, M Soledad Fernández-García, Antonio Fueyo,[...]. Cell Rep 2014
114
50

The N-terminal domain plays a crucial role in the structure of a full-length human mitochondrial Lon protease.
Sami Kereïche, Lubomír Kováčik, Jan Bednár, Vladimír Pevala, Nina Kunová, Gabriela Ondrovičová, Jacob Bauer, Ľuboš Ambro, Jana Bellová, Eva Kutejová,[...]. Sci Rep 2016
18
50

Phosphorylation of human TFAM in mitochondria impairs DNA binding and promotes degradation by the AAA+ Lon protease.
Bin Lu, Jae Lee, Xiaobo Nie, Min Li, Yaroslav I Morozov, Sundararajan Venkatesh, Daniel F Bogenhagen, Dmitry Temiakov, Carolyn K Suzuki. Mol Cell 2013
173
50

Mutations in LONP1, a mitochondrial matrix protease, cause CODAS syndrome.
Esra Dikoglu, Ali Alfaiz, Maria Gorna, Deborah Bertola, Jong Hee Chae, Tae-Joon Cho, Murat Derbent, Yasemin Alanay, Tulay Guran, Ok-Hwa Kim,[...]. Am J Med Genet A 2015
41
50


AAA+ proteases: ATP-fueled machines of protein destruction.
Robert T Sauer, Tania A Baker. Annu Rev Biochem 2011
467
50

Structural Insights into the Allosteric Operation of the Lon AAA+ Protease.
Chien-Chu Lin, Shih-Chieh Su, Ming-Yuan Su, Pi-Hui Liang, Chia-Cheng Feng, Shih-Hsiung Wu, Chung-I Chang. Structure 2016
19
50

Bacterial proteolytic complexes as therapeutic targets.
Ravikiran M Raju, Alfred L Goldberg, Eric J Rubin. Nat Rev Drug Discov 2012
73
25

Acyldepsipeptide antibiotics induce the formation of a structured axial channel in ClpP: A model for the ClpX/ClpA-bound state of ClpP.
Dominic Him Shun Li, Yu Seon Chung, Melanie Gloyd, Ebenezer Joseph, Rodolfo Ghirlando, Gerard D Wright, Yi-Qiang Cheng, Michael R Maurizi, Alba Guarné, Joaquin Ortega. Chem Biol 2010
106
25

Proteasomes and their kin: proteases in the machine age.
Cecile M Pickart, Robert E Cohen. Nat Rev Mol Cell Biol 2004
536
25

MolProbity: all-atom structure validation for macromolecular crystallography.
Vincent B Chen, W Bryan Arendall, Jeffrey J Headd, Daniel A Keedy, Robert M Immormino, Gary J Kapral, Laura W Murray, Jane S Richardson, David C Richardson. Acta Crystallogr D Biol Crystallogr 2010
25

Roles of the ClpX IGF loops in ClpP association, dissociation, and protein degradation.
Alvaro J Amor, Karl R Schmitz, Tania A Baker, Robert T Sauer. Protein Sci 2019
10
25

EMRinger: side chain-directed model and map validation for 3D cryo-electron microscopy.
Benjamin A Barad, Nathaniel Echols, Ray Yu-Ruei Wang, Yifan Cheng, Frank DiMaio, Paul D Adams, James S Fraser. Nat Methods 2015
395
25

PHENIX: a comprehensive Python-based system for macromolecular structure solution.
Paul D Adams, Pavel V Afonine, Gábor Bunkóczi, Vincent B Chen, Ian W Davis, Nathaniel Echols, Jeffrey J Headd, Li-Wei Hung, Gary J Kapral, Ralf W Grosse-Kunstleve,[...]. Acta Crystallogr D Biol Crystallogr 2010
25

Unveiling the long-held secrets of the 26S proteasome.
Friedrich Förster, Pia Unverdorben, Paweł Sledź, Wolfgang Baumeister. Structure 2013
49
25



Fabrication of carbon films with ∼ 500nm holes for cryo-EM with a direct detector device.
Chelsea R Marr, Samir Benlekbir, John L Rubinstein. J Struct Biol 2014
39
25

Structure and Functional Properties of the Active Form of the Proteolytic Complex, ClpP1P2, from Mycobacterium tuberculosis.
Mi Li, Olga Kandror, Tatos Akopian, Poorva Dharkar, Alexander Wlodawer, Michael R Maurizi, Alfred L Goldberg. J Biol Chem 2016
20
25


Development and Characterization of Potent Cyclic Acyldepsipeptide Analogues with Increased Antimicrobial Activity.
Jordan D Goodreid, John Janetzko, John P Santa Maria, Keith S Wong, Elisa Leung, Bryan T Eger, Steve Bryson, Emil F Pai, Scott D Gray-Owen, Suzanne Walker,[...]. J Med Chem 2016
30
25

Dynamics of the ClpP serine protease: a model for self-compartmentalized proteases.
Kaiyin Liu, Adedeji Ologbenla, Walid A Houry. Crit Rev Biochem Mol Biol 2014
41
25

AAA+ chaperones and acyldepsipeptides activate the ClpP protease via conformational control.
Malte Gersch, Kirsten Famulla, Maria Dahmen, Christoph Göbl, Imran Malik, Klaus Richter, Vadim S Korotkov, Peter Sass, Helga Rübsamen-Schaeff, Tobias Madl,[...]. Nat Commun 2015
65
25

ClpXP, an ATP-powered unfolding and protein-degradation machine.
Tania A Baker, Robert T Sauer. Biochim Biophys Acta 2012
254
25

Bacterial proteases, untapped antimicrobial drug targets.
Elizabeth Culp, Gerard D Wright. J Antibiot (Tokyo) 2017
87
25

Structural basis of protein translocation by the Vps4-Vta1 AAA ATPase.
Nicole Monroe, Han Han, Peter S Shen, Wesley I Sundquist, Christopher P Hill. Elife 2017
74
25

Visualization of substrate binding and translocation by the ATP-dependent protease, ClpXP.
J Ortega, S K Singh, T Ishikawa, M R Maurizi, A C Steven. Mol Cell 2000
139
25

The ClpP N-terminus coordinates substrate access with protease active site reactivity.
Laura D Jennings, Jen Bohon, Mark R Chance, Stuart Licht. Biochemistry 2008
30
25

Protein unfolding by a AAA+ protease is dependent on ATP-hydrolysis rates and substrate energy landscapes.
Andreas Martin, Tania A Baker, Robert T Sauer. Nat Struct Mol Biol 2008
100
25

An improved cryogen for plunge freezing.
William F Tivol, Ariane Briegel, Grant J Jensen. Microsc Microanal 2008
158
25

The Phyre2 web portal for protein modeling, prediction and analysis.
Lawrence A Kelley, Stefans Mezulis, Christopher M Yates, Mark N Wass, Michael J E Sternberg. Nat Protoc 2015
25

Acyldepsipeptide Analogs Dysregulate Human Mitochondrial ClpP Protease Activity and Cause Apoptotic Cell Death.
Keith S Wong, Mark F Mabanglo, Thiago V Seraphim, Antonio Mollica, Yu-Qian Mao, Kamran Rizzolo, Elisa Leung, Mohamed T Moutaoufik, Larissa Hoell, Sadhna Phanse,[...]. Cell Chem Biol 2018
36
25

Mechanism of DNA translocation in a replicative hexameric helicase.
Eric J Enemark, Leemor Joshua-Tor. Nature 2006
380
25


Mitochondrial ClpP-Mediated Proteolysis Induces Selective Cancer Cell Lethality.
Jo Ishizawa, Sarah F Zarabi, R Eric Davis, Ondrej Halgas, Takenobu Nii, Yulia Jitkova, Ran Zhao, Jonathan St-Germain, Lauren E Heese, Grace Egan,[...]. Cancer Cell 2019
84
25

A Chemical Disruptor of the ClpX Chaperone Complex Attenuates the Virulence of Multidrug-Resistant Staphylococcus aureus.
Christian Fetzer, Vadim S Korotkov, Robert Thänert, Kyu Myung Lee, Martin Neuenschwander, Jens Peter von Kries, Eva Medina, Stephan A Sieber. Angew Chem Int Ed Engl 2017
19
25

Asymmetric interactions of ATP with the AAA+ ClpX6 unfoldase: allosteric control of a protein machine.
Greg L Hersch, Randall E Burton, Daniel N Bolon, Tania A Baker, Robert T Sauer. Cell 2005
131
25



ClpA and ClpX ATPases bind simultaneously to opposite ends of ClpP peptidase to form active hybrid complexes.
Joaquin Ortega, Hyun Sook Lee, Michael R Maurizi, Alasdair C Steven. J Struct Biol 2004
44
25


The antibiotic ADEP reprogrammes ClpP, switching it from a regulated to an uncontrolled protease.
Janine Kirstein, Anja Hoffmann, Hauke Lilie, Ronny Schmidt, Helga Rübsamen-Waigmann, Heike Brötz-Oesterhelt, Axel Mogk, Kürşad Turgay. EMBO Mol Med 2009
138
25


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.