A citation-based method for searching scientific literature

Ting Zheng, Zhao Feng, Xiaojun Wang, Tao Jiang, Rui Jin, Peilin Zhao, Ting Luo, Hui Gong, Qingming Luo, Jing Yuan. Biomed Opt Express 2019
Times Cited: 12







List of co-cited articles
79 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Micro-optical sectioning tomography to obtain a high-resolution atlas of the mouse brain.
Anan Li, Hui Gong, Bin Zhang, Qingdi Wang, Cheng Yan, Jingpeng Wu, Qian Liu, Shaoqun Zeng, Qingming Luo. Science 2010
251
75

Tissue clearing and its applications in neuroscience.
Hiroki R Ueda, Ali Ertürk, Kwanghun Chung, Viviana Gradinaru, Alain Chédotal, Pavel Tomancak, Philipp J Keller. Nat Rev Neurosci 2020
146
50

High-Speed and Scalable Whole-Brain Imaging in Rodents and Primates.
Kaoru Seiriki, Atsushi Kasai, Takeshi Hashimoto, Wiebke Schulze, Misaki Niu, Shun Yamaguchi, Takanobu Nakazawa, Ken-Ichi Inoue, Shiori Uezono, Masahiko Takada,[...]. Neuron 2017
54
50

Serial two-photon tomography for automated ex vivo mouse brain imaging.
Timothy Ragan, Lolahon R Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H Sebastian Seung, Pavel Osten. Nat Methods 2012
333
50

iDISCO: a simple, rapid method to immunolabel large tissue samples for volume imaging.
Nicolas Renier, Zhuhao Wu, David J Simon, Jing Yang, Pablo Ariel, Marc Tessier-Lavigne. Cell 2014
698
41

Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature.
Christoph Kirst, Sophie Skriabine, Alba Vieites-Prado, Thomas Topilko, Paul Bertin, Gaspard Gerschenfeld, Florine Verny, Piotr Topilko, Nicolas Michalski, Marc Tessier-Lavigne,[...]. Cell 2020
68
33

Whole Brain Imaging with Serial Two-Photon Tomography.
Stephen P Amato, Feng Pan, Joel Schwartz, Timothy M Ragan. Front Neuroanat 2016
31
33

Whole-Brain Profiling of Cells and Circuits in Mammals by Tissue Clearing and Light-Sheet Microscopy.
Hiroki R Ueda, Hans-Ulrich Dodt, Pavel Osten, Michael N Economo, Jayaram Chandrashekar, Philipp J Keller. Neuron 2020
53
33

Structural and molecular interrogation of intact biological systems.
Kwanghun Chung, Jenelle Wallace, Sung-Yon Kim, Sandhiya Kalyanasundaram, Aaron S Andalman, Thomas J Davidson, Julie J Mirzabekov, Kelly A Zalocusky, Joanna Mattis, Aleksandra K Denisin,[...]. Nature 2013
33

Multiplexed and scalable super-resolution imaging of three-dimensional protein localization in size-adjustable tissues.
Taeyun Ku, Justin Swaney, Jeong-Yoon Park, Alexandre Albanese, Evan Murray, Jae Hun Cho, Young-Gyun Park, Vamsi Mangena, Jiapei Chen, Kwanghun Chung. Nat Biotechnol 2016
173
33

Ultramicroscopy: three-dimensional visualization of neuronal networks in the whole mouse brain.
Hans-Ulrich Dodt, Ulrich Leischner, Anja Schierloh, Nina Jährling, Christoph Peter Mauch, Katrin Deininger, Jan Michael Deussing, Matthias Eder, Walter Zieglgänsberger, Klaus Becker. Nat Methods 2007
707
33

A platform for brain-wide imaging and reconstruction of individual neurons.
Michael N Economo, Nathan G Clack, Luke D Lavis, Charles R Gerfen, Karel Svoboda, Eugene W Myers, Jayaram Chandrashekar. Elife 2016
198
33

A mesoscale connectome of the mouse brain.
Seung Wook Oh, Julie A Harris, Lydia Ng, Brent Winslow, Nicholas Cain, Stefan Mihalas, Quanxin Wang, Chris Lau, Leonard Kuan, Alex M Henry,[...]. Nature 2014
33

Cellular and Molecular Probing of Intact Human Organs.
Shan Zhao, Mihail Ivilinov Todorov, Ruiyao Cai, Rami Ai -Maskari, Hanno Steinke, Elisabeth Kemter, Hongcheng Mai, Zhouyi Rong, Martin Warmer, Karen Stanic,[...]. Cell 2020
79
25

FDISCO: Advanced solvent-based clearing method for imaging whole organs.
Yisong Qi, Tingting Yu, Jianyi Xu, Peng Wan, Yilin Ma, Jingtan Zhu, Yusha Li, Hui Gong, Qingming Luo, Dan Zhu. Sci Adv 2019
83
25

Continuously tracing brain-wide long-distance axonal projections in mice at a one-micron voxel resolution.
Hui Gong, Shaoqun Zeng, Cheng Yan, Xiaohua Lv, Zhongqin Yang, Tonghui Xu, Zhao Feng, Wenxiang Ding, Xiaoli Qi, Anan Li,[...]. Neuroimage 2013
112
25

Reconstruction of 1,000 Projection Neurons Reveals New Cell Types and Organization of Long-Range Connectivity in the Mouse Brain.
Johan Winnubst, Erhan Bas, Tiago A Ferreira, Zhuhao Wu, Michael N Economo, Patrick Edson, Ben J Arthur, Christopher Bruns, Konrad Rokicki, David Schauder,[...]. Cell 2019
129
25

Neuroanatomical tract-tracing techniques that did go viral.
Jose L Lanciego, Floris G Wouterlood. Brain Struct Funct 2020
26
25

Fiji: an open-source platform for biological-image analysis.
Johannes Schindelin, Ignacio Arganda-Carreras, Erwin Frise, Verena Kaynig, Mark Longair, Tobias Pietzsch, Stephan Preibisch, Curtis Rueden, Stephan Saalfeld, Benjamin Schmid,[...]. Nat Methods 2012
25

Visualization of brain circuits using two-photon fluorescence micro-optical sectioning tomography.
Ting Zheng, Zhongqing Yang, Anan Li, Xiaohua Lv, Zhenqiao Zhou, Xiaojun Wang, Xiaoli Qi, Shiwei Li, Qingming Luo, Hui Gong,[...]. Opt Express 2013
43
25

Developing 3D microscopy with CLARITY on human brain tissue: Towards a tool for informing and validating MRI-based histology.
Markus Morawski, Evgeniya Kirilina, Nico Scherf, Carsten Jäger, Katja Reimann, Robert Trampel, Filippos Gavriilidis, Stefan Geyer, Bernd Biedermann, Thomas Arendt,[...]. Neuroimage 2018
44
25


Precise Cerebral Vascular Atlas in Stereotaxic Coordinates of Whole Mouse Brain.
Benyi Xiong, Anan Li, Yang Lou, Shangbin Chen, Ben Long, Jie Peng, Zhongqin Yang, Tonghui Xu, Xiaoquan Yang, Xiangning Li,[...]. Front Neuroanat 2017
92
25

Light sheet fluorescence microscopy for neuroscience.
Stella Corsetti, Frank Gunn-Moore, Kishan Dholakia. J Neurosci Methods 2019
12
25

Next generation histology methods for three-dimensional imaging of fresh and archival human brain tissues.
Hei Ming Lai, Alan King Lun Liu, Harry Ho Man Ng, Marc H Goldfinger, Tsz Wing Chau, John DeFelice, Bension S Tilley, Wai Man Wong, Wutian Wu, Steve M Gentleman. Nat Commun 2018
53
25

Clarifying Tissue Clearing.
Douglas S Richardson, Jeff W Lichtman. Cell 2015
580
16

Panoptic imaging of transparent mice reveals whole-body neuronal projections and skull-meninges connections.
Ruiyao Cai, Chenchen Pan, Alireza Ghasemigharagoz, Mihail Ivilinov Todorov, Benjamin Förstera, Shan Zhao, Harsharan S Bhatia, Arnaldo Parra-Damas, Leander Mrowka, Delphine Theodorou,[...]. Nat Neurosci 2019
144
16

Development of the neurons controlling fertility in humans: new insights from 3D imaging and transparent fetal brains.
Filippo Casoni, Samuel A Malone, Morgane Belle, Federico Luzzati, Francis Collier, Cecile Allet, Erik Hrabovszky, Sowmyalakshmi Rasika, Vincent Prevot, Alain Chédotal,[...]. Development 2016
71
16

Quantitative whole-brain 3D imaging of tyrosine hydroxylase-labeled neuron architecture in the mouse MPTP model of Parkinson's disease.
Urmas Roostalu, Casper B G Salinas, Ditte D Thorbek, Jacob L Skytte, Katrine Fabricius, Pernille Barkholt, Linu M John, Vanessa Isabell Jurtz, Lotte Bjerre Knudsen, Jacob Jelsing,[...]. Dis Model Mech 2019
16
16

Fluorescent-protein stabilization and high-resolution imaging of cleared, intact mouse brains.
Martin K Schwarz, Annemarie Scherbarth, Rolf Sprengel, Johann Engelhardt, Patrick Theer, Guenter Giese. PLoS One 2015
110
16

Mapping of Brain Activity by Automated Volume Analysis of Immediate Early Genes.
Nicolas Renier, Eliza L Adams, Christoph Kirst, Zhuhao Wu, Ricardo Azevedo, Johannes Kohl, Anita E Autry, Lolahon Kadiri, Kannan Umadevi Venkataraju, Yu Zhou,[...]. Cell 2016
319
16

Protection of tissue physicochemical properties using polyfunctional crosslinkers.
Young-Gyun Park, Chang Ho Sohn, Ritchie Chen, Margaret McCue, Dae Hee Yun, Gabrielle T Drummond, Taeyun Ku, Nicholas B Evans, Hayeon Caitlyn Oak, Wendy Trieu,[...]. Nat Biotechnol 2018
93
16

3D Neuron Reconstruction in Tangled Neuronal Image With Deep Networks.
Qiufu Li, Linlin Shen. IEEE Trans Med Imaging 2020
8
25

CLARITY for mapping the nervous system.
Kwanghun Chung, Karl Deisseroth. Nat Methods 2013
414
16

NeuroGPS: automated localization of neurons for brain circuits using L1 minimization model.
Tingwei Quan, Ting Zheng, Zhongqing Yang, Wenxiang Ding, Shiwei Li, Jing Li, Hang Zhou, Qingming Luo, Hui Gong, Shaoqun Zeng. Sci Rep 2013
30
16

A whole-brain map of long-range inputs to GABAergic interneurons in the mouse medial prefrontal cortex.
Qingtao Sun, Xiangning Li, Miao Ren, Mengting Zhao, Qiuyuan Zhong, Yuqi Ren, Pan Luo, Hong Ni, Xiaoyu Zhang, Chen Zhang,[...]. Nat Neurosci 2019
68
16

In-vivo and ex-vivo optical clearing methods for biological tissues: review.
Irene Costantini, Riccardo Cicchi, Ludovico Silvestri, Francesco Vanzi, Francesco Saverio Pavone. Biomed Opt Express 2019
53
16

Elasticizing tissues for reversible shape transformation and accelerated molecular labeling.
Taeyun Ku, Webster Guan, Nicholas B Evans, Chang Ho Sohn, Alexandre Albanese, Joon-Goon Kim, Matthew P Frosch, Kwanghun Chung. Nat Methods 2020
15
16

Three-Dimensional Study of Alzheimer's Disease Hallmarks Using the iDISCO Clearing Method.
Thomas Liebmann, Nicolas Renier, Karima Bettayeb, Paul Greengard, Marc Tessier-Lavigne, Marc Flajolet. Cell Rep 2016
91
16


Light sheet microscopy of living or cleared specimens.
Philipp J Keller, Hans-Ulrich Dodt. Curr Opin Neurobiol 2012
103
16

Light-sheet fluorescence expansion microscopy: fast mapping of neural circuits at super resolution.
Jana Bürgers, Irina Pavlova, Juan E Rodriguez-Gatica, Christian Henneberger, Marc Oeller, Jan A Ruland, Jan P Siebrasse, Ulrich Kubitscheck, Martin K Schwarz. Neurophotonics 2019
20
16

X10 expansion microscopy enables 25-nm resolution on conventional microscopes.
Sven Truckenbrodt, Manuel Maidorn, Dagmar Crzan, Hanna Wildhagen, Selda Kabatas, Silvio O Rizzoli. EMBO Rep 2018
68
16

Q&A: Expansion microscopy.
Ruixuan Gao, Shoh M Asano, Edward S Boyden. BMC Biol 2017
29
16

Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution.
Ruixuan Gao, Shoh M Asano, Srigokul Upadhyayula, Igor Pisarev, Daniel E Milkie, Tsung-Li Liu, Ved Singh, Austin Graves, Grace H Huynh, Yongxin Zhao,[...]. Science 2019
138
16

A practical guide to optimization in X10 expansion microscopy.
Sven Truckenbrodt, Christoph Sommer, Silvio O Rizzoli, Johann G Danzl. Nat Protoc 2019
37
16

Protein-retention expansion microscopy of cells and tissues labeled using standard fluorescent proteins and antibodies.
Paul W Tillberg, Fei Chen, Kiryl D Piatkevich, Yongxin Zhao, Chih-Chieh Jay Yu, Brian P English, Linyi Gao, Anthony Martorell, Ho-Jun Suk, Fumiaki Yoshida,[...]. Nat Biotechnol 2016
233
16

Optical imaging. Expansion microscopy.
Fei Chen, Paul W Tillberg, Edward S Boyden. Science 2015
533
16

Expansion microscopy with conventional antibodies and fluorescent proteins.
Tyler J Chozinski, Aaron R Halpern, Haruhisa Okawa, Hyeon-Jin Kim, Grant J Tremel, Rachel O L Wong, Joshua C Vaughan. Nat Methods 2016
176
16

Iterative expansion microscopy.
Jae-Byum Chang, Fei Chen, Young-Gyu Yoon, Erica E Jung, Hazen Babcock, Jeong Seuk Kang, Shoh Asano, Ho-Jun Suk, Nikita Pak, Paul W Tillberg,[...]. Nat Methods 2017
148
16


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.