A citation-based method for searching scientific literature

Daniel N Weinberg, Simon Papillon-Cavanagh, Haifen Chen, Yuan Yue, Xiao Chen, Kartik N Rajagopalan, Cynthia Horth, John T McGuire, Xinjing Xu, Hamid Nikbakht, Agata E Lemiesz, Dylan M Marchione, Matthew R Marunde, Matthew J Meiners, Marcus A Cheek, Michael-Christopher Keogh, Eric Bareke, Anissa Djedid, Ashot S Harutyunyan, Nada Jabado, Benjamin A Garcia, Haitao Li, C David Allis, Jacek Majewski, Chao Lu. Nature 2019
Times Cited: 149







List of co-cited articles
1242 articles co-cited >1



Times Cited
  Times     Co-cited
Similarity


Genomic profiling of DNA methyltransferases reveals a role for DNMT3B in genic methylation.
Tuncay Baubec, Daniele F Colombo, Christiane Wirbelauer, Juliane Schmidt, Lukas Burger, Arnaud R Krebs, Altuna Akalin, Dirk Schübeler. Nature 2015
362
28

The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.
Arunkumar Dhayalan, Arumugam Rajavelu, Philipp Rathert, Raluca Tamas, Renata Z Jurkowska, Sergey Ragozin, Albert Jeltsch. J Biol Chem 2010
322
17

DNMT3L connects unmethylated lysine 4 of histone H3 to de novo methylation of DNA.
Steen K T Ooi, Chen Qiu, Emily Bernstein, Keqin Li, Da Jia, Zhe Yang, Hediye Erdjument-Bromage, Paul Tempst, Shau-Ping Lin, C David Allis,[...]. Nature 2007
975
17


Intragenic DNA methylation prevents spurious transcription initiation.
Francesco Neri, Stefania Rapelli, Anna Krepelova, Danny Incarnato, Caterina Parlato, Giulia Basile, Mara Maldotti, Francesca Anselmi, Salvatore Oliviero. Nature 2017
310
15

The H3K36me2 Methyltransferase Nsd1 Demarcates PRC2-Mediated H3K27me2 and H3K27me3 Domains in Embryonic Stem Cells.
Gundula Streubel, Ariane Watson, Sri Ganesh Jammula, Andrea Scelfo, Darren J Fitzpatrick, Giorgio Oliviero, Rachel McCole, Eric Conway, Eleanor Glancy, Gian Luca Negri,[...]. Mol Cell 2018
65
23

Histone H3K36 mutations promote sarcomagenesis through altered histone methylation landscape.
Chao Lu, Siddhant U Jain, Dominik Hoelper, Denise Bechet, Rosalynn C Molden, Leili Ran, Devan Murphy, Sriram Venneti, Meera Hameed, Bruce R Pawel,[...]. Science 2016
210
15

NSD2 links dimethylation of histone H3 at lysine 36 to oncogenic programming.
Alex J Kuo, Peggie Cheung, Kaifu Chen, Barry M Zee, Mitomu Kioi, Josh Lauring, Yuanxin Xi, Ben Ho Park, Xiaobing Shi, Benjamin A Garcia,[...]. Mol Cell 2011
262
14


Understanding the language of Lys36 methylation at histone H3.
Eric J Wagner, Phillip B Carpenter. Nat Rev Mol Cell Biol 2012
540
14

A DNMT3A PWWP mutation leads to methylation of bivalent chromatin and growth retardation in mice.
Gintarė Sendžikaitė, Courtney W Hanna, Kathleen R Stewart-Morgan, Elena Ivanova, Gavin Kelsey. Nat Commun 2019
38
34

Gain-of-function DNMT3A mutations cause microcephalic dwarfism and hypermethylation of Polycomb-regulated regions.
Patricia Heyn, Clare V Logan, Adeline Fluteau, Rachel C Challis, Tatsiana Auchynnikava, Carol-Anne Martin, Joseph A Marsh, Francesca Taglini, Fiona Kilanowski, David A Parry,[...]. Nat Genet 2019
55
23

SETD2 regulates the maternal epigenome, genomic imprinting and embryonic development.
Qianhua Xu, Yunlong Xiang, Qiujun Wang, Leyun Wang, Julie Brind'Amour, Aaron Blair Bogutz, Yu Zhang, Bingjie Zhang, Guang Yu, Weikun Xia,[...]. Nat Genet 2019
90
14

Impaired H3K36 methylation defines a subset of head and neck squamous cell carcinomas.
Simon Papillon-Cavanagh, Chao Lu, Tenzin Gayden, Leonie G Mikael, Denise Bechet, Christina Karamboulas, Laurie Ailles, Jason Karamchandani, Dylan M Marchione, Benjamin A Garcia,[...]. Nat Genet 2017
125
12

DNMT3A reads and connects histone H3K36me2 to DNA methylation.
Wenqi Xu, Jiahui Li, Bowen Rong, Bin Zhao, Mei Wang, Ruofei Dai, Qilong Chen, Hang Liu, Zhongkai Gu, Shuxian Liu,[...]. Protein Cell 2020
13
84

Structural insight into autoinhibition and histone H3-induced activation of DNMT3A.
Xue Guo, Ling Wang, Jie Li, Zhanyu Ding, Jianxiong Xiao, Xiaotong Yin, Shuang He, Pan Shi, Liping Dong, Guohong Li,[...]. Nature 2015
187
11

H3K36 methylation antagonizes PRC2-mediated H3K27 methylation.
Wen Yuan, Mo Xu, Chang Huang, Nan Liu, She Chen, Bing Zhu. J Biol Chem 2011
322
11

Chromatin methylation activity of Dnmt3a and Dnmt3a/3L is guided by interaction of the ADD domain with the histone H3 tail.
Yingying Zhang, Renata Jurkowska, Szabolcs Soeroes, Arumugam Rajavelu, Arunkumar Dhayalan, Ina Bock, Philipp Rathert, Ole Brandt, Richard Reinhardt, Wolfgang Fischle,[...]. Nucleic Acids Res 2010
225
11


Inhibition of PRC2 activity by a gain-of-function H3 mutation found in pediatric glioblastoma.
Peter W Lewis, Manuel M Müller, Matthew S Koletsky, Francisco Cordero, Shu Lin, Laura A Banaszynski, Benjamin A Garcia, Tom W Muir, Oren J Becher, C David Allis. Science 2013
751
11

Human DNA methylomes at base resolution show widespread epigenomic differences.
Ryan Lister, Mattia Pelizzola, Robert H Dowen, R David Hawkins, Gary Hon, Julian Tonti-Filippini, Joseph R Nery, Leonard Lee, Zhen Ye, Que-Minh Ngo,[...]. Nature 2009
10

Structural basis for DNMT3A-mediated de novo DNA methylation.
Zhi-Min Zhang, Rui Lu, Pengcheng Wang, Yang Yu, Dongliang Chen, Linfeng Gao, Shuo Liu, Debin Ji, Scott B Rothbart, Yinsheng Wang,[...]. Nature 2018
103
9

The diverse roles of DNA methylation in mammalian development and disease.
Maxim V C Greenberg, Deborah Bourc'his. Nat Rev Mol Cell Biol 2019
504
9

A bivalent chromatin structure marks key developmental genes in embryonic stem cells.
Bradley E Bernstein, Tarjei S Mikkelsen, Xiaohui Xie, Michael Kamal, Dana J Huebert, James Cuff, Ben Fry, Alex Meissner, Marius Wernig, Kathrin Plath,[...]. Cell 2006
9

Translating the histone code.
T Jenuwein, C D Allis. Science 2001
9

The language of covalent histone modifications.
B D Strahl, C D Allis. Nature 2000
9

In vivo targeting of de novo DNA methylation by histone modifications in yeast and mouse.
Marco Morselli, William A Pastor, Barbara Montanini, Kevin Nee, Roberto Ferrari, Kai Fu, Giancarlo Bonora, Liudmilla Rubbi, Amander T Clark, Simone Ottonello,[...]. Elife 2015
101
9

Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.
Mamta Tahiliani, Kian Peng Koh, Yinghua Shen, William A Pastor, Hozefa Bandukwala, Yevgeny Brudno, Suneet Agarwal, Lakshminarayan M Iyer, David R Liu, L Aravind,[...]. Science 2009
9

Isoform-specific localization of DNMT3A regulates DNA methylation fidelity at bivalent CpG islands.
Massimiliano Manzo, Joël Wirz, Christina Ambrosi, Rodrigo Villaseñor, Bernd Roschitzki, Tuncay Baubec. EMBO J 2017
58
15

Structural basis for recognition of H3K4 methylation status by the DNA methyltransferase 3A ATRX-DNMT3-DNMT3L domain.
Junji Otani, Toshiyuki Nankumo, Kyohei Arita, Susumu Inamoto, Mariko Ariyoshi, Masahiro Shirakawa. EMBO Rep 2009
243
9

Histone methylation by PRC2 is inhibited by active chromatin marks.
Frank W Schmitges, Archana B Prusty, Mahamadou Faty, Alexandra Stützer, Gondichatnahalli M Lingaraju, Jonathan Aiwazian, Ragna Sack, Daniel Hess, Ling Li, Shaolian Zhou,[...]. Mol Cell 2011
441
9

Structural basis for recognition of histone H3K36me3 nucleosome by human de novo DNA methyltransferases 3A and 3B.
Grégoire Rondelet, Thomas Dal Maso, Luc Willems, Johan Wouters. J Struct Biol 2016
65
13


STAR: ultrafast universal RNA-seq aligner.
Alexander Dobin, Carrie A Davis, Felix Schlesinger, Jorg Drenkow, Chris Zaleski, Sonali Jha, Philippe Batut, Mark Chaisson, Thomas R Gingeras. Bioinformatics 2013
9

NUP98-NSD1 links H3K36 methylation to Hox-A gene activation and leukaemogenesis.
Gang G Wang, Ling Cai, Martina P Pasillas, Mark P Kamps. Nat Cell Biol 2007
277
9

Haploinsufficiency of NSD1 causes Sotos syndrome.
Naohiro Kurotaki, Kiyoshi Imaizumi, Naoki Harada, Mitsuo Masuno, Tatsuro Kondoh, Toshiro Nagai, Hirofumi Ohashi, Kenji Naritomi, Masato Tsukahara, Yoshio Makita,[...]. Nat Genet 2002
390
9

NSD1 inactivation defines an immune cold, DNA hypomethylated subtype in squamous cell carcinoma.
Kevin Brennan, June Ho Shin, Joshua K Tay, Marcos Prunello, Andrew J Gentles, John B Sunwoo, Olivier Gevaert. Sci Rep 2017
34
26

NSD1 mutations generate a genome-wide DNA methylation signature.
S Choufani, C Cytrynbaum, B H Y Chung, A L Turinsky, D Grafodatskaya, Y A Chen, A S A Cohen, L Dupuis, D T Butcher, M T Siu,[...]. Nat Commun 2015
91
8

Mutations in the DNA methyltransferase gene DNMT3A cause an overgrowth syndrome with intellectual disability.
Katrina Tatton-Brown, Sheila Seal, Elise Ruark, Jenny Harmer, Emma Ramsay, Silvana Del Vecchio Duarte, Anna Zachariou, Sandra Hanks, Eleanor O'Brien, Lise Aksglaede,[...]. Nat Genet 2014
176
8

Structure of nucleosome-bound DNA methyltransferases DNMT3A and DNMT3B.
Ting-Hai Xu, Minmin Liu, X Edward Zhou, Gangning Liang, Gongpu Zhao, H Eric Xu, Karsten Melcher, Peter A Jones. Nature 2020
20
40

Dnmt3L and the establishment of maternal genomic imprints.
D Bourc'his, G L Xu, C S Lin, B Bollman, T H Bestor. Science 2001
922
8

Driver mutations in histone H3.3 and chromatin remodelling genes in paediatric glioblastoma.
Jeremy Schwartzentruber, Andrey Korshunov, Xiao-Yang Liu, David T W Jones, Elke Pfaff, Karine Jacob, Dominik Sturm, Adam M Fontebasso, Dong-Anh Khuong Quang, Martje Tönjes,[...]. Nature 2012
8

Understanding histone H3 lysine 36 methylation and its deregulation in disease.
Jie Li, Jeong Hyun Ahn, Gang Greg Wang. Cell Mol Life Sci 2019
48
16

Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities.
Sven Heinz, Christopher Benner, Nathanael Spann, Eric Bertolino, Yin C Lin, Peter Laslo, Jason X Cheng, Cornelis Murre, Harinder Singh, Christopher K Glass. Mol Cell 2010
8

The target of the NSD family of histone lysine methyltransferases depends on the nature of the substrate.
Yan Li, Patrick Trojer, Chong-Feng Xu, Peggie Cheung, Alex Kuo, William J Drury, Qi Qiao, Thomas A Neubert, Rui-Ming Xu, Or Gozani,[...]. J Biol Chem 2009
191
8

NSD1 is essential for early post-implantation development and has a catalytically active SET domain.
Geetha Vani Rayasam, Olivia Wendling, Pierre-Olivier Angrand, Manuel Mark, Karen Niederreither, Luyan Song, Thierry Lerouge, Gordon L Hager, Pierre Chambon, Régine Losson. EMBO J 2003
239
8

Model-based analysis of ChIP-Seq (MACS).
Yong Zhang, Tao Liu, Clifford A Meyer, Jérôme Eeckhoute, David S Johnson, Bradley E Bernstein, Chad Nusbaum, Richard M Myers, Myles Brown, Wei Li,[...]. Genome Biol 2008
8

limma powers differential expression analyses for RNA-sequencing and microarray studies.
Matthew E Ritchie, Belinda Phipson, Di Wu, Yifang Hu, Charity W Law, Wei Shi, Gordon K Smyth. Nucleic Acids Res 2015
8

The histone H3.3K36M mutation reprograms the epigenome of chondroblastomas.
Dong Fang, Haiyun Gan, Jeong-Heon Lee, Jing Han, Zhiquan Wang, Scott M Riester, Long Jin, Jianji Chen, Hui Zhou, Jinglong Wang,[...]. Science 2016
140
8

The structure of NSD1 reveals an autoregulatory mechanism underlying histone H3K36 methylation.
Qi Qiao, Yan Li, Zhi Chen, Mingzhu Wang, Danny Reinberg, Rui-Ming Xu. J Biol Chem 2011
116
8


Co-cited is the co-citation frequency, indicating how many articles cite the article together with the query article. Similarity is the co-citation as percentage of the times cited of the query article or the article in the search results, whichever is the lowest. These numbers are calculated for the last 100 citations when articles are cited more than 100 times.